AAGE00000000.2 Aedes aegypti
- Master
# of Contigs: 36,206 (1 is dead) # of Proteins: 0 # of Scaffolds/Chrs: 4,758 (2 are dead) Total length: 1,310,090,344 bp BioProject: PRJNA12434 BioSample: SAMN02953616 Keywords: WGS Annotation: Scaffolds Organism: Aedes aegypti – show lineagehide lineage Biosource: /mol_type = genomic/strain = LiverpoolWGS: AAGE02000001:AAGE02036206 Scaffolds: CH477186:CH479178, CH899794:CH902558 4,758 scaffolds, 17,387 proteins, total length is 1,383,957,531 basesReference: Genome sequence of Aedes aegypti, a major arbovirus vector : Science 316 (5832), 1718-1723 (2007) – show 95 authorshide authorsNene,V., Wortman,J.R., Lawson,D., Haas,B., Kodira,C., Tu,Z.J., Loftus,B., Xi,Z., Megy,K., Grabherr,M., Ren,Q., Zdobnov,E.M., Lobo,N.F., Campbell,K.S., Brown,S.E., Bonaldo,M.F., Zhu,J., Sinkins,S.P., Hogenkamp,D.G., Amedeo,P., Arensburger,P., Atkinson,P.W., Bidwell,S., Biedler,J., Birney,E., Bruggner,R.V., Costas,J., Coy,M.R., Crabtree,J., Crawford,M., Debruyn,B., Decaprio,D., Eiglmeier,K., Eisenstadt,E., El-Dorry,H., Gelbart,W.M., Gomes,S.L., Hammond,M., Hannick,L.I., Hogan,J.R., Holmes,M.H., Jaffe,D., Johnston,J.S., Kennedy,R.C., Koo,H., Kravitz,S., Kriventseva,E.V., Kulp,D., Labutti,K., Lee,E., Li,S., Lovin,D.D., Mao,C., Mauceli,E., Menck,C.F., Miller,J.R., Montgomery,P., Mori,A., Nascimento,A.L., Naveira,H.F., Nusbaum,C., O'leary,S., Orvis,J., Pertea,M., Quesneville,H., Reidenbach,K.R., Rogers,Y.H., Roth,C.W., Schneider,J.R., Schatz,M., Shumway,M., Stanke,M., Stinson,E.O., Tubio,J.M., Vanzee,J.P., Verjovski-Almeida,S., Werner,D., White,O., Wyder,S., Zeng,Q., Zhao,Q., Zhao,Y., Hill,C.A., Raikhel,A.S., Soares,M.B., Knudson,D.L., Lee,N.H., Galagan,J., Salzberg,S.L., Paulsen,I.T., Dimopoulos,G., Collins,F.H., Birren,B., Fraser-Liggett,C.M., Severson,D.W.Submission: Submitted (03-FEB-2005) Parasite Genomics/Bioinformatics, The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – show 11 authorshide authorsLoftus,B.J., Nene,V.M., Salzberg,S., Shumway,M., Koo,H., Zhao,Y., Holmes,M., Miller,J., Schatz,M., Pop,M., Fraser,C.M.Submission: Submitted (07-OCT-2005) Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA – show 33 authorshide authorsGalagan,J., Devon,K., Henn,M.R., Severson,D.W., Collins,F., Jaffe,D., Rounsley,S., DeCaprio,D., Kodira,C., Lander,E., Crawford,M., Butler,J., Alvarez,P., Gnerre,S., Grabherr,M., Kleber,M., Mauceli,E., Brockman,W., Young,S., LaButti,K., Pushparaj,V., Koehrsen,M., Engels,R., Montgomery,P., Pearson,M., Howarth,C., Zeng,Q., Yandava,C., Oleary,S., Alvarado,L., Nusbaum,C., Birren,B., The Broad Institute Genome Sequencing PlatformSubmission: Submitted (07-OCT-2005) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA – show 22 authorshide authorsLoftus,B.J., Nene,V.M., Hannick,L.I., Bidwell,S., Haas,B., Amedeo,P., Orvis,J., Wortman,J.R., White,O.R., Salzberg,S., Shumway,M., Koo,H., Zhao,Y., Holmes,M., Miller,J., Schatz,M., Pop,M., Pai,G., Utterback,T., Rogers,Y.-H., Kravitz,S., Fraser,C.M.On Oct 26, 2005 this sequence version replaced gi:61677293.
The Aedes aegypti whole genome shotgun (WGS) project has the project accession AAGE00000000. This version of the project (02) has the accession number AAGE02000000, and consists of sequences AAGE02000001-AAGE02036206.
The sequence for this assembly was produced jointly by The Broad Institute of Harvard/MIT and The Institute for Genomic Research. The assembly represents 7.6X sequence coverage of the genome and the total length of the contigs is 1.31 Gb. Additional information about the Aedes aegypti sequencing project and assembly can be found at http://www.broad.mit.edu/annotation/disease_vector/aedes_aegypti/ and http://www.tigr.org/msc/aedes/aedes.shtml. The annotation for this assembly was produced jointly by The Institute for Genomic Research and VectorBase with support from The Broad Institute of Harvard/MIT. Computational methods were optimized with respect to training datasets but gene models and functional assignments have not been manually curated. This release contains a high confidence subset of the gene models predicted, characterized by a minimum level of protein and/or EST support. Long-term curation of the sequence and subsequent annotation updates will be the responsibility of VectorBase at http://www.vectorbase.org.
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Minor Version Create Date 1 10/26/2005 9 12/17/2019 10 02/16/2021 11 02/28/2021 12 03/01/2021 13 03/16/2021