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Whole Genome Shotgun (WGS) sequencing projects are incomplete genomes or incomplete chromosomes that are being sequenced by a whole genome shotgun strategy. WGS assemblies may be annotated, but annotation is not required. Transcriptome Shotgun Assembly (TSA) sequences are computationally assembled sequences from primary data such as ESTs, traces and Next Generation Sequencing Technologies. Please consult WGS Submission or TSA Submission pages for more details.

How to find a particular WGS/TSA sequence...Hide 'How to find...'
To find a particular WGS/TSA sequence, search on this page for the project that contains the sequence, then click on the 4-letter accession prefix in the "Prefix" column. On the specific WGS/TSA project page, navigate to the "Contigs" tab and use the "Search" box to find a particular sequence. The sequence records can be viewed in FASTA or GenBank format. You cannot search for multiple sequences at one time; each must be done individually. The complete project can be downloaded in GenBank, fasta, and ASN.1 formats from the "Download" tab.
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39,626 projects found. Show projects on page.
#PrefixProjectDivBioProjectBioSampleOrganismContigsScaffolds# of ProteinsCompleteUpdate DateCreate Date
#MbasesAnnot#MbasesAnnot
1AAAA02WGSPLNPRJNA361SAMN02953581Oryza sativa Indica Group50,231410.73,095769.7Y37,3582014-08-062004-10-21
2AAAB01WGSINVPRJNA1438SAMN02952903Anopheles gambiae str. PEST69,724328.9Y5230.514,0892014-08-052002-03-22
3AAAC01WGSBCTPRJNA299SAMN02435829Bacillus anthracis str. A201215.12013-12-052002-05-09
4AAAK03WGSBCTPRJNA71SAMN02440386Enterococcus faecium DO1632.8Y2,7212013-12-122004-06-07
5AAAL02WGSBCTPRJNA260SAMN02441075Xylella fastidiosa Dixon322.6Y2,3582013-12-122005-07-26
6AAAM04WGSBCTPRJNA261SAMN02441076Xylella fastidiosa subsp. sandyi Ann-12752.72014-01-062014-01-06
7AABF01WGSBCTPRJNA1419SAMN02470057Fusobacterium nucleatum subsp. vincentii ATCC 492563022.1Y2,2502014-01-082003-01-24
8AABL01WGSINVPRJNA1436SAMN02952904Plasmodium yoelii yoelii5,68723.1Y7,8612014-08-052002-10-03
9AABM02WGSBCTPRJNA321SAMN02441414Bifidobacterium longum DJO10A1202.42015-06-252003-03-26
10AABR07WGSRODPRJNA10629SAMN02808228Rattus norvegicus73,5542,580.31,1245,645.72014-07-012014-06-30
11AABS01WGSINVPRJNA166SAMN02769623Ciona intestinalis2,501116.72014-08-012002-12-12
12AABT01WGSPLNPRJNA187SAMN02953582Aspergillus terreus ATCC 20542175.12014-08-062002-12-19
13AABW01WGSBCTPRJNA1414SAMN02393728Rickettsia sibirica 24611.3Y1,2342013-11-062003-02-06
14AABX03WGSPLNPRJNA13841SAMN02953583Neurospora crassa OR74A41141.02041.0Y10,7852014-08-062013-10-25
15AABY01WGSPLNPRJNA1440SAMN02953584Saccharomyces paradoxus NRRL Y-1721783211.92014-08-062003-03-28
16AABZ01WGSPLNPRJNA374SAMN02953585Saccharomyces mikatae IFO 18151,64811.52014-08-062003-03-28
17AACA01WGSPLNPRJNA1441SAMN02953586Saccharomyces uvarum MCYC 6231,09811.52014-08-062003-03-28
18AACB02WGSINVPRJNA1439SAMN02952905Giardia lamblia ATCC 5080330611.2Y9211.27,3642014-08-052007-09-24
19AACC02WGSPRIPRJNA10793SAMN02981216Homo sapiens171137.7Y20123.8Y8182014-08-112004-07-19
20AACD01WGSPLNPRJNA130SAMN02953587Aspergillus nidulans FGSC A424830.1Y1729.79,5412014-08-062003-04-07
21AACE03WGSPLNPRJNA1445SAMN02953588Lachancea kluyveri NRRL Y-126513611.5811.32014-08-062011-05-12
22AACF01WGSPLNPRJNA1444SAMN02953589Naumovozyma castellii NRRL Y-1263057011.22014-08-062003-05-22
23AACG02WGSPLNPRJNA1443SAMN02953590Saccharomyces bayanus 623-6C58611.92014-08-062005-10-14
24AACH01WGSPLNPRJNA9601SAMN02953591Saccharomyces mikatae IFO 18152,80810.82014-08-062003-05-22
25AACI03WGSPLNPRJNA1442SAMN02953592Saccharomyces kudriavzevii IFO 18022,05511.2Y2,05411.23,7642014-08-062012-08-21
26AACK01WGSBCTPRJNA198SAMN02471910Actinobacillus pleuropneumoniae serovar 1 str. 40741402.32014-01-082003-04-21
27AACM02WGSPLNPRJNA13839SAMN02953593Fusarium graminearum PH-143536.33772.9Y13,3132014-08-062007-04-11
28AACN01WGSMAMPRJNA10628SAMN03004377Canis lupus familiaris1,089,6361,517.52014-08-262003-09-27
29AACP02WGSPLNPRJNA1446SAMN02900459Ustilago maydis 52125419.62719.7Y6,7832015-02-182015-02-10
30AACQ01WGSPLNPRJNA10701SAMN02953594Candida albicans SC531441327.6Y14,2172014-08-062004-04-21
31AACR01WGSBCTPRJNA441SAMN02471829Pasteuria nishizawae str. North American25.02014-01-082003-07-23
32AACS02WGSPLNPRJNA1447SAMN02953595Coprinopsis cinerea okayama7#1306836.2Y13,3562014-08-062010-06-16
33AACT01WGSINVPRJNA1435SAMN02952906Ciona savignyi66,800401.43,447547.72014-08-052003-10-24
34AACU03WGSPLNPRJNA13840SAMN02953596Magnaporthe oryzae 70-1521940.95341.0Y12,8362014-08-062011-09-19
35AACV01WGSPLNPRJNA13139SAMN02953597Oryza sativa Japonica Group35,047374.21,436717.2Y35,3942014-08-062004-10-21
36AACW02WGSPLNPRJNA13066SAMN02953598Rhizopus delemar RA 99-88039145.38346.1Y17,4592014-08-062005-09-19
37AACX01WGSBCTPRJNA19251SAMN02469820Burkholderia thailandensis E264446.326.42014-01-082007-04-10
38AACY02WGSENVPRJNA13694SAMN02954345marine metagenome4,124,4954,468.53,087,2064,552.9Y6,123,3952014-08-262007-03-16
39AACZ03WGSPRIPRJNA13184SAMN02981217Pan troglodytes192,8982,839.911,2206,208.62014-08-112010-01-21
40AADA01WGSPRIPRJNA13184SAMN02981217Pan troglodytes361,8642,733.92014-08-112003-12-05
41AADB02WGSPRIPRJNA1431SAMN02981219Homo sapiens401,9313,087.314,0955,666.9Y64,4792014-08-112005-08-25
42AADC01WGSPRIPRJNA1431SAMN02981219Homo sapiens169,1562,656.02,6392,972.02014-08-112004-02-04
43AADD01WGSPRIPRJNA1431SAMN02981219Homo sapiens211,4932,695.61,3722,852.02014-08-112004-02-03
44AADE01WGSINVPRJNA10626SAMN00779672Drosophila pseudoobscura pseudoobscura17,507171.34,896152.7Y23,4562014-08-042003-12-24
45AADG06WGSINVPRJNA10625SAMN00002455Apis mellifera16,501229.15,660453.72014-08-042010-11-30
46AADK01WGSINVPRJNA13125SAMN02952907Bombyx mori66,482393.416,462343.72014-08-052004-10-12
47AADL01WGSENVPRJNA13696SAMN02954273mine drainage metagenome2,53413.09089.8Y2,5432014-08-122004-02-01
48AADM01WGSPLNPRJNA10734SAMN02953599Lachancea waltii NCYC 264471310.92014-08-062004-03-15
49AADN04WGSVRTPRJNA13342SAMN02981218Gallus gallus24,6951,132.78772,045.32015-12-162015-12-16
50AADQ01WGSBCTPRJNA10753SAMN02415268Listeria monocytogenes serotype 1/2a str. F68541333.0Y2,9672013-11-202004-05-04
51AADR01WGSBCTPRJNA10752SAMN02415269Listeria monocytogenes serotype 4b str. H78581813.0Y3,1112013-11-202004-05-04
52AADS01WGSPLNPRJNA135SAMN02953600Phanerochaete chrysosporium RP-781,32329.82014-08-062004-04-29
53AADV02WGSBCTPRJNA10651SAMN02441415Crocosphaera watsonii WH 85013236.2Y5,9582013-12-122005-06-16
54AAEC03WGSPLNPRJNA12883SAMN02953601Coccidioides immitis RS1129.0729.0Y9,9102015-07-132009-10-23
55AAEE01WGSINVPRJNA144SAMN02952908Cryptosporidium parvum Iowa II189.1Y89.13,8052014-08-052004-04-05
56AAEG01WGSPLNPRJNA13674SAMN02953602Saccharomyces cerevisiae RM11-1a11511.71711.7Y5,3772014-08-062005-03-16
57AAEK01WGSBCTPRJNA10788SAMN02435890Bacillus cereus G92412075.9Y6,1462013-12-052004-05-21
58AAEL02WGSINVPRJNA13200SAMN02952909Cryptosporidium hominis TU5023588.92014-08-052013-12-17
59AAEN01WGSBCTPRJNA10796SAMN02435891Bacillus anthracis str. CNEVA-9066305.52013-12-052004-06-03
60AAEO01WGSBCTPRJNA10795SAMN02435882Bacillus anthracis str. A1055425.42013-12-052004-06-03
61AAEP01WGSBCTPRJNA10797SAMN02435883Bacillus anthracis str. Vollum525.52013-12-052004-06-03
62AAEQ01WGSBCTPRJNA324SAMN02435884Bacillus anthracis str. Kruger B645.52013-12-052004-06-04
63AAER01WGSBCTPRJNA337SAMN02435885Bacillus anthracis str. Western North America USA6153445.52013-12-052004-06-04
64AAES01WGSBCTPRJNA10799SAMN02435830Bacillus anthracis str. Australia 94495.52013-12-052004-06-04
65AAEU02WGSINVPRJNA12366SAMN02952910Drosophila yakuba13,439162.68,122165.7Y23,3042015-11-062006-06-27
66AAEW02WGSBCTPRJNA12551SAMN02441806Desulfuromonas acetoxidans DSM 684513.8Y3,2342013-12-122006-05-12
67AAEX03WGSMAMPRJNA13179SAMN02953603Canis lupus familiaris27,1052,392.71,0814,714.52014-08-062011-10-24
68AAEY01WGSPLNPRJNA12386SAMN02953604Cryptococcus neoformans var. neoformans B-3501A7018.5Y1419.76,5782014-08-062004-07-13
69AAFA03WGSBCTPRJNA12417SAMN02441756Streptococcus suis 89/1591822.1Y2,1192013-12-122009-02-20
70AAFB02WGSINVPRJNA142SAMN02953605Entamoeba histolytica HM-1:IMSS2,17320.81,52920.8Y8,1632014-08-062007-03-07
71AAFC05WGSMAMPRJNA12555SAMN02898106Bos taurus42,2502,674.3Y2,9045,344.62015-11-192015-11-13
72AAFD02WGSPLNPRJNA191SAMN02744045Thalassiosira pseudonana CCMP133511329.56229.6Y10,6602014-08-042008-10-15
73AAFI02WGSINVPRJNA201SAMN02953606Dictyostelium discoideum AX426234.2Y4234.113,2962014-08-062009-08-18
74AAFJ01WGSBCTPRJNA12518SAMN02435831Campylobacter upsaliensis RM3195201.8Y1,9342013-12-052005-01-04
75AAFL01WGSBCTPRJNA12516SAMN02435832Campylobacter coli RM2228381.9Y1,9672013-12-052005-01-04
76AAFM01WGSPLNPRJNA12729SAMN02953607Meyerozyma guilliermondii ATCC 62607110.6910.6Y5,9202014-08-062005-03-17
77AAFN02WGSPLNPRJNA13675SAMN02953608Candida tropicalis MYA-340412814.62414.6Y6,2542014-08-062009-06-16
78AAFO01WGSPLNPRJNA16373SAMN02953609Candida albicans WO-18614.42214.5Y5,7522014-08-062006-03-28
79AAFP02WGSPLNPRJNA13691SAMN02953610Cryptococcus gattii R26524417.32817.5Y6,4722015-08-052015-08-05
80AAFR03WGSMAMPRJNA12561SAMN02953611Monodelphis domestica72,8113,501.61,1273,569.42014-08-062006-01-12
81AAFS01WGSINVPRJNA13195SAMN02953612Drosophila pseudoobscura pseudoobscura12,430157.52,032161.22014-08-062004-11-19
82AAFT01WGSPLNPRJNA12753SAMN02953613Clavispora lusitaniae ATCC 427208812.1912.1Y5,9362014-08-062005-03-16
83AAFU01WGSPLNPRJNA12795SAMN02953614Chaetomium globosum CBS 148.511,24534.33734.9Y11,0482014-08-062005-03-14
84AAFV01WGSBCTPRJNA13286SAMN02469731Streptococcus pyogenes M49 5912951.3Y2014-01-082004-12-23
85AAFW02WGSPLNPRJNA13304SAMN02953615Saccharomyces cerevisiae YJM78925812.0Y5,9022014-08-062007-07-13
86AAFX01WGSENVPRJNA13699SAMN02954283soil metagenome139,340144.92014-08-122005-02-19
87AAFY01WGSENVPRJNA32357SAMN02954316whale fall metagenome28,15129.82014-08-122005-02-23
88AAFZ01WGSENVPRJNA32355SAMN02954315whale fall metagenome29,93430.92014-08-122005-02-23
89AAGA01WGSENVPRJNA32359SAMN02954317whale fall metagenome26,23228.92014-08-122005-02-23
90AAGB01WGSBCTPRJNA13365SAMN02435862Wolbachia endosymbiont of Drosophila ananassae4641.4Y1,8022013-12-052005-02-03
91AAGC01WGSBCTPRJNA13364SAMN02435892Wolbachia endosymbiont of Drosophila simulans6291.1Y7602013-12-052005-02-03
92AAGD02WGSINVPRJNA12588SAMN00627085Caenorhabditis remanei12,680138.43,670145.4Y31,4762014-08-042007-07-17
93AAGE02WGSINVPRJNA12434SAMN02953616Aedes aegypti36,2061,310.14,7581,384.0Y17,3892014-08-062005-10-26
94AAGF03WGSINVPRJNA12564SAMN02953617Tetrahymena thermophila SB2101,778103.01,158103.0Y26,9962014-08-062008-09-12
95AAGH01WGSINVPRJNA12464SAMN02953618Drosophila simulans31,198125.710,823264.3Y15,4152014-08-062005-03-23
96AAGI01WGSPLNPRJNA13754SAMN02953619Parastagonospora nodorum SN1549637.110937.2Y15,9832014-08-062005-04-04
97AAGJ05WGSINVPRJNA10736SAMN00829422Strongylocentrotus purpuratus146,294902.5Y7,982958.42015-03-102015-03-04
98AAGK01WGSINVPRJNA16138SAMN02953620Theileria parva98.3Y4,0792014-08-062005-06-30
99AAGL01WGSPRIPRJNA18247SAMN02981220Gorilla gorilla4,9383.12014-08-112006-11-09
100AAGM01WGSPRIPRJNA18245SAMN02981221Pongo abelii3,7832.42014-08-112006-11-09