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Taxonomy browser (Arabidopsis thaliana)

Arabidopsis thaliana

Taxonomy ID: 3702
Genbank common name: thale cress
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Other names:
common name: thale-cress
common name: mouse-ear cress
authority: Arabidopsis thaliana (L.) Heynh.
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
   Entrez records   
Database name Direct links
Nucleotide 337,637
Nucleotide EST 1,529,700
Nucleotide GSS 752,845
Protein 229,082
Structure 831
Genome 1
Popset 1,161
SNP 1,069,597
Domains 63
GEO Datasets 33,808
UniGene 30,633
PubMed Central 13,072
Gene 38,524
HomoloGene 10,445
SRA Experiments 8,830
Probe 206,829
Assembly 9
Bio Project 2,473
Bio Sample 10,532
Bio Systems 1,025
Clone DB 20,916
Epigenomics 148
GEO Profiles 2,014,308
PubChem BioAssay 162
Protein Clusters 12,341
Taxonomy 1

Comments and References:

Nota BeneFNA - Arabidopsis
Al-Shehbaz IA. 2009. Arabidopsis (de Candolle) Heynhold in F. Holl and G. Heynhold, Fl. Sachsen. 1: 538. 1842. [name conserved]. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.

Nota BeneFlora of China - Brassicaceae
Tai-yien Cheo, Lianli Lu, Guang Yang, Ihsan Al-Shehbaz & Vladimir Dorofeev. 2001. Brassicaceae Burnett. In Wu, Z. Y. & P. H. Raven, eds. Flora of China. Vol. 8 (Brassicaceae through Saxifragaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org

O'Kane M & Al-Shehbaz IA 1997
O'Kane SL, Jr. and Al-Shehbaz IH. 1997. A synopsis of Arabidopsis (Brassicaceae). Novon 7: 323-327.


Genome Information

Go to NCBI genomic BLAST page for Arabidopsis thaliana
Genome view: 6 chromosomes
Names 1 2 3 4 5 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CHIP PRIMERWALK SHOTGUN TRANSPOSON ALL
JCVI - J. Craig Venter Institute
- 8,002 150,365 118 158,485
PERLEGEN - Perlegen Sciences
13,546 - - - 13,546
TIGR - The Institute for Genome Research
- 630 11,362 - 11,992
Totals per type
13,546 8,632 161,727 118 184,023

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Arabidopsis thaliana taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb Dryad Digital Repository
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Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic Encyclopedia of life
GOLDCARD: Gi0044421 organism-specific Genomes On Line Database
GOLDCARD: Gi0044569 organism-specific
GOLDCARD: Gi0044864 organism-specific
GOLDCARD: Gi0044271 organism-specific
GOLDCARD: Gc00041 organism-specific
GOLDCARD: Gi0065104 organism-specific
GOLDCARD: Gr00310 organism-specific
GOLDCARD: Gi10582 organism-specific
GOLDCARD: Gi10581 organism-specific
GOLDCARD: Gi10583 organism-specific
GOLDCARD: Gi10580 organism-specific
GOLDCARD: Gi03373 organism-specific
GOLDCARD: Gi0072338 organism-specific
GOLDCARD: Gi0071608 organism-specific
GOLDCARD: Gr00309 organism-specific
GOLDCARD: Gi0065100 organism-specific
GOLDCARD: Gi0053802 organism-specific
GOLDCARD: Gi0053801 organism-specific
GOLDCARD: Gi0053803 organism-specific
GOLDCARD: Gi0048217 organism-specific
GOLDCARD: Gi0045084 organism-specific
GOLDCARD: Gi0044978 organism-specific
GOLDCARD: Gr00317 organism-specific
GOLDCARD: Gr00316 organism-specific
GOLDCARD: Gt0012864 organism-specific
search GBIF taxonomy/phylogenetic Global Biodiversity Information Facility
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
639560100: Arabidopsis thaliana Columbia organism-specific Integrated Microbial Genomes
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic Integrated Taxonomic Information System
EST Index clones/clone libraries Kazusa DNA Research Institute
KAOS clones/clone libraries
TAIR taxonomy/phylogenetic NCBI taxonomy bookmarks
ABRC taxonomy/phylogenetic
AGR taxonomy/phylogenetic
MATDB taxonomy/phylogenetic
DAtA taxonomy/phylogenetic
Arabidopsis thaliana taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
TIGR companies/research institutes The Institute for Genomic Research
Arabidopsis thaliana taxonomy/phylogenetic The International Plant Names Index
Arabidopsis Trans-NIH Model Organism Initiative
Arabidopsis thaliana taxonomy/phylogenetic TreeBase
Arabidopsis thaliana (L.) Heynh. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Arabidopsis thaliana ecotype Wu-0 organism-specific WebScipio - eukaryotic gene identification
WebScipio: Arabidopsis thaliana organism-specific
diArk: Arabidopsis thaliana ecotype Sf-2 organism-specific diArk a resource for eukaryotic genome research
diArk: Arabidopsis thaliana organism-specific
diArk: Arabidopsis thaliana ecotype Kro-0 organism-specific
diArk: Arabidopsis thaliana ecotype C24 organism-specific
diArk: Arabidopsis thaliana ecotype LER-1 organism-specific
diArk: Arabidopsis thaliana ecotype Bur-0 organism-specific
diArk: Arabidopsis thaliana ecotype Can-0 organism-specific
diArk: Arabidopsis thaliana ecotype Ct-0 organism-specific
diArk: Arabidopsis thaliana ecotype Edi-0 organism-specific
diArk: Arabidopsis thaliana ecotype Hi-0 organism-specific
diArk: Arabidopsis thaliana ecotype Kn-0 organism-specific
diArk: Arabidopsis thaliana ecotype Ler-0 organism-specific
diArk: Arabidopsis thaliana ecotype Tsu-0 organism-specific
diArk: Arabidopsis thaliana ecotype Wu-0 organism-specific
diArk: Arabidopsis thaliana ecotype Mt-0 organism-specific
diArk: Arabidopsis thaliana ecotype Oy-0 organism-specific
diArk: Arabidopsis thaliana ecotype Rsch-4 organism-specific
diArk: Arabidopsis thaliana ecotype Po-0 organism-specific
diArk: Arabidopsis thaliana ecotype Ws-0 organism-specific
diArk: Arabidopsis thaliana ecotype Wil-2 organism-specific
diArk: Arabidopsis thaliana ecotype Zu-0 organism-specific
diArk: Arabidopsis thaliana ecotype No-0 organism-specific
Arabidopsis thaliana taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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