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Taxonomy browser (Streptomyces hygroscopicus)

Streptomyces hygroscopicus

Taxonomy ID: 1912 (for references in articles please use NCBI:txid1912)
current name
Streptomyces hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980) emend Labeda and Lyons 1991, nom. approb., emended name 1),2)
type strain of Streptomyces hygroscopicus: ATCC:27438, CBS:773.72, BCRC:11611, CIP:106840, DSM:40578, IFO:13472, NBRC:13472, JCM:4772, BCCM/LMG:19335, NRRL:2387, NRRL:ISP-5578, RIA:1433, VKM:Ac-831
homotypic synonym:
"Actinomyces hygroscopicus" Jensen 1931, effective name 3)
Streptomyces hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980) emend. Komaki et al. 2022, emended name 2) in [List of Changes in Taxonomic Opinion No. 37 (2023), Komaki H et al. (2022)]
includes:
Streptomyces sp. USC014
Streptomyces sp. USC019
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Streptomyces endus Anderson and Gottlieb 1952 (Approved Lists 1980)
type strain of Streptomyces endus: personal::9-20, ATCC:23904, CBS:800.68, DSM:40187, IFO:12859, NBRC:12859, JCM:4213, JCM:4636, NRRL:2339, NRRL-ISP:5187, RIA:1141, ISP:5187
heterotypic synonym
Streptomyces hygroscopicus subsp. sporocinereus (Preobrazhenskaya 1986) Komaki et al. 2022 in [Validation List No. 207 (2022), Komaki H et al. (2022), Validation List No. 211 (2023)]
basionym:
Streptomyces sporocinereus (ex Krasil'nikov 1970) Preobrazhenskaya 1986
type strain of Streptomyces sporocinereus: ATCC:43692, DSM:41460, JCM:9093, NBRC:100766, NRRL:B-16376, VKM:Ac-312, BCCM/LMG:20311
not considered type of Streptomyces sporocinereus: NBRC:100776
not verified as type of Streptomyces sporocinereus: INMI:32
homotypic synonym:
"Actinomyces sporocinereus" Krasil'nikov 1970, effective name 3)
Streptomyces sporocinereus (ex Krassilnikov 1970) Preobrazhenskaya 1986 emend. Nouioui et al. 2018, emended name 2) in [Nouioui I et al. (2018c)]
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces; Streptomyces violaceusniger group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 6,004 682 1,388
Protein 131,786 87,270 -
Structure 46 33 -
Genome 1 1 -
Popset 50 50 -
Conserved Domains 1 1 -
GEO Datasets 39 3 -
PubMed Central 2,137 2,137 -
Gene 46,413 10,188 -
SRA Experiments 10 7 -
Protein Clusters 4,130 4,130 -
Identical Protein Groups 101,226 74,278 -
BioProject 21 10 -
BioSample 46 13 6
Assembly 16 4 1
PubChem BioAssay 10 10 -
Taxonomy 15 1 -

Notes:

Comments and References:

List of Changes in Taxonomic Opinion No. 37 (2023), PubMed: abstract
Oren, A., and Göker, M. "Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 37." Int. J. Syst. Evol. Microbiol. 73(1):005696.
Komaki H et al. (2022), doi: 10.3390/microorganisms10020349, PubMed: abstract
Komaki, H., Igarashi, Y., and Tamura, T. "Taxonomic positions of a nuzenamide-producer and its closely related strains." Microorganisms (2022) 10(2):349.
Validation List No. 207 (2022), PubMed: abstract
Validation List No. 207: "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2022) 72(9):005517.
Validation List No. 211 (2023), PubMed: abstract
Validation List no. 211. "Valid publication of new names and new combinations effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2023) 73(5):005845.
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
image:Streptomyces hygroscopicus
Labeda DP & Lyons AJ (1991)
Labeda, D.P., and Lyons, A.J. "The Streptomyces violaceusniger cluster is heterogeneous in DNA relatedness among strains: emendation of the descriptions of S. violaceusniger and Streptomyces hygroscopicus." Int. J. Syst. Bacteriol. (1991) 41:398-401. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Komaki H et al. (2017)
Komaki, H., Ichikawa, N., Oguchi, A., Hamada, M., Tamura, T., Fujita, N., and Suzuki, K.I. "Genome analysis-based reclassification of Streptomyces endus and Streptomyces sporocinereus as later heterotypic synonyms of Streptomyces hygroscopicus subsp. hygroscopicus." Int. J. Syst. Evol. Microbiol. (2017) 67:343-345.
Shirling EB & Gottlieb D (1972)
Shirling, E.B., and Gottlieb, D. "Cooperative description of type strains of Streptomyces. V. Additional descriptions." Int. J. Syst. Bacteriol. (1972) 22(4):265-394. [No PubMed record available.]
Skerman VBD et al. (1980) (Yersinia philomiragia)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Skerman VBD et al. (1980) (Streptomyces endus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
VALIDATION LIST No. 22 (1986) (Streptomyces sporocinereus)
VALIDATION LIST No. 22. Int. J. Syst. Bacteriol. (1986) 36:573-576.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Streptomyces hygroscopicus meta-databases BacDive
GOLD: Go0375613 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Streptomyces hygroscopicus culture/stock collections Global Catalogue of Microorganisms
4 records from provider organism-specific Integrated Microbial Genomes
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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