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Taxonomy browser (Danio rerio)

Danio rerio

Taxonomy ID: 7955
Genbank common name: zebrafish
Inherited blast name: bony fishes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
synonym: Cyprinus rerio Hamilton, 1822
synonym: Cyprinus rerio
synonym: Danio rerio (Hamilton, 1822)
synonym: Brachydanio rerio
common name: zebra fish
common name: leopard danio
common name: zebra danio
Lineage( full )
cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Elopocephala; Clupeocephala; Otocephala; Ostariophysi; Otophysi; Cypriniphysi; Cypriniformes; Cyprinoidea; Cyprinidae; Danio
   Entrez records   
Database name Direct links
Nucleotide 163,796
Nucleotide EST 1,481,930
Nucleotide GSS 161,330
Protein 69,987
Structure 63
Genome Sequences 26
Genome Projects 1
Popset 36
SNP 662,336
3D Domains 263
GEO Datasets 171
GEO Expressions 157,065
UniGene 51,481
UniSTS 28,088
PubMed Central 2,646
Gene 35,528
HomoloGene 13,900
OMIA 7
SRA Experiments 18
Taxonomy 1

Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Danio rerio
Genome view: 25 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CLONEEND EST FINISHING PCR PRIMERWALK RT-PCR SHOTGUN TRANSPOSON WGS ALL
ABC - Agencourt Bioscience Corporation
- 375,745 - - - - - - - 375,745
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
- - - - - 25,412 - - - 25,412
GIS - Genome Institute of Singapore
- 22,084 - - - - - - - 22,084
MPGEB - Max-Planck Institute for Developmental Biology
264,602 - - - - - - - - 264,602
NISC - NIH Intramural Sequencing Center
- - - - - - 188,828 - - 188,828
SC - The Sanger Centre
1,619,688 - - 22,874 529,378 - 18,491,180 23,318 25,519,092 46,205,530
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - 228 - - - 11,839 - - 12,067
WUGSC - Washington University, Genome Sequencing Center
- 64,518 - - - - - - - 64,518
Totals per type
1,884,290 462,347 228 22,874 529,378 25,412 18,691,847 23,318 25,519,092 47,158,786

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Danio rerio taxonomy/phylogenetic Barcodes of Life
Brachydanio rerio taxonomy/phylogenetic Catalog of Life
Cyprinus rerio taxonomy/phylogenetic
Cyprinus rerio Hamilton, 1822 taxonomy/phylogenetic
Danio rerio taxonomy/phylogenetic
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic Encyclopedia of life
Brachydanio rerio taxonomy/phylogenetic FishBase
Danio rerio taxonomy/phylogenetic
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Danio rerio (Hamilton, 1822) taxonomy/phylogenetic Integrated Taxonomic Information System
zebrafish genome resources NCBI Genome Guide
NCBI Mitochondria NCBI Mitochondrial Genomes
Zebrafish Information Network NCBI taxonomy bookmarks
zebrafish Trans-NIH Model Organism Initiative
Brachydanio rerio taxonomy/phylogenetic TreeBase
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.
To see LinkOut links in this lineage click here

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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