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Taxonomy browser (Rhodococcus opacus)

Rhodococcus opacus

Taxonomy ID: 37919 (for references in articles please use NCBI:txid37919)
current name
Rhodococcus opacus Klatte et al. 1995 in [Validation List No. 52 (1995), Euzeby JP & Kudo T (2001)]
type strain of Rhodococcus opacus: ATCC:51881, CIP:104549, DSM:43205, IFO:16217, NBRC:16217, JCM:9703, NBRC:100624, personal::1b
homotypic synonym:
"Rhodococcus opacus" Klatte et al. 1994, effective name 1) in [Klatte S et al. (1994)]
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Nocardia opaca" (den Dooren de Jong 1927) Waksman and Henrici 1948, effective name 1)
basionym:
"Mycobacterium opacum" den Dooren de Jong 1927, effective name 1)
heterotypic synonym
Rhodococcus percolatus Briglia et al. 1996 in [Briglia M et al. (1996)]
type strain of Rhodococcus percolatus: personal::MBS1, LMAU R292, CIP:104964, DSM:44240, HAMBI:1752, IFO:16218, NBRC:16218, JCM:10087, NBRC:100626
heterotypic synonym
Rhodococcus imtechensis Ghosh et al. 2006 in [Ghosh A et al. (2006)]
type strain of Rhodococcus imtechensis: personal::RKJ300, JCM:13270, MTCC:7085, DSM:45091, CIP:109333
homotypic synonym:
Rhodococcus imtechensis Ghosh et al. 2006 emend. Nouioui et al. 2018, emended name 2) in [Nouioui I et al. (2018c)]
includes:
Rhodococcus sp. RKJ300
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 10,020 4,099 980
Protein 231,413 179,584 -
Structure 37 34 -
Genome 1 1 -
Popset 25 25 -
GEO Datasets 5 5 -
PubMed Central 769 769 -
Gene 56,484 23,814 -
SRA Experiments 155 39 -
Protein Clusters 6,894 6,894 -
Identical Protein Groups 141,153 124,267 -
BioProject 47 36 -
BioSample 108 52 8
Assembly 37 29 3
PubChem BioAssay 6 6 -
Taxonomy 6 1 -

Notes:

Comments and References:
Validation List No. 52 (1995)
VALIDATION LIST No. 52. Int. J. Syst. Bacteriol. (1995) 45(1):197-198.
Euzeby JP & Kudo T (2001), PubMed: abstract
Euzeby, J.P., and Kudo, T. "Corrigenda to the Validation Lists." Int. J. Syst. Evol. Microbiol. (2001) 51(5):1933-1938.
Klatte S et al. (1994)
Klatte, S., Kroppenstedt, R.M., and Rainey, F.A. "Rhodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus-species." Syst. Appl. Microbiol. (1994) 17(3):355-360. [No PubMed record available.]
Briglia M et al. (1996), PubMed: abstract
Briglia, M., Rainey, F.A., Stackebrandt, E., Schraa, G., and Salkinoja-Salonen, M.S. "Rhodococcus percolatus sp. nov., a bacterium degrading 2,4,6-trichlorophenol." Int. J. Syst. Bacteriol. (1996) 46(1):23-30.
Ghosh A et al. (2006), PubMed: abstract
Ghosh, A., Paul, D., Prakash, D., Mayilraj, S., and Jain, R.K. "Rhodococcus imtechensis sp. nov., a nitrophenol-degrading actinomycete." Int. J. Syst. Evol. Microbiol. (2006) 56(8):1965-1969.
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Aggag M & Schlegel HG (1973), doi:10.1007/BF00409942
Aggag, M., and Schlegel, H.G. "Studies on a Gram-positive hydrogen bacterium, Nocardia opaca strain 1 b. I. Description and physiological characterization." Arch. Mikrobiol. (1973) 88(4):299-318. [No abstract available]
den Dooren de Jong LE (1927)
den Dooren de Jong, L.E. "Uber protaminophage Bakterien." Zentralbl. Bakteriol., II Abt. (1927) 71:193-232. [No PubMed record available.]
Lee SD & Kim IS (2021), doi:10.1099/ijsem.0.004890
Lee, S.D., and Kim, I.S. "Rhodococcus spelaei sp. nov., isolated from a cave, and proposals that Rhodococcus biphenylivorans is a later synonym of Rhodococcus pyridinivorans, Rhodococcus qingshengii and Rhodococcus baikonurensis are later synonyms of Rhodococcus erythropolis, and Rhodococcus percolatus and Rhodococcus imtechensis are later synonyms of Rhodococcus opacus." Int. J. Syst. Evol. Microbiol. (2021) 71(7):004890.
Waksman SA & Henrici AT (1948)
Waksman, S.A., and Henrici, A.T. "Family II. Actinomycetaceae." IN: Breed, Murray, and Hitchens (Eds.), Bergey's Manual of Determinative Bacteriology, 6th Ed. (1948). The Williams and Wilkins Co., Balitmore. pp. 892-928. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Rhodococcus opacus meta-databases BacDive
Rhodococcus opacus 1CP organism-specific BioCyc
Rhodococcus opacus Klatte et al. 1995 taxonomy/phylogenetic Encyclopedia of life
6 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Rhodococcus opacus culture/stock collections Global Catalogue of Microorganisms
10 records from provider organism-specific Integrated Microbial Genomes
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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