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Taxonomy browser (Zea mays)

Zea mays

Taxonomy ID: 4577
Inherited blast name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Other names:
synonym: Zea mays var. japonica
common name: maize
authority: Zea mays L.
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
   Entrez records   
Database name Subtree links Direct links
Nucleotide 684,790 613,512
Nucleotide EST 2,019,629 2,019,629
Nucleotide GSS 2,099,065 1,622,810
Protein 210,703 203,788
Structure 157 156
Genome 1 1
Popset 470 341
SNP 60,009,738 60,009,738
Domains 1 1
GEO Datasets 10,357 10,180
UniGene 92,052 92,052
PubMed Central 13,873 13,871
Gene 57,404 57,119
SRA Experiments 6,893 5,448
Probe 58,068 58,036
Assembly 8 7
Bio Project 582 499
Bio Sample 28,155 26,759
Bio Systems 273 273
Clone DB 1,144,901 1,144,901
GEO Profiles 36,480 36,480
PubChem BioAssay 415 415
Protein Clusters 92 92
Taxonomy 6 1

Comments and References:

Nota BeneGRIN (Sept 28, 2007)
Name verified on 28 September 2007 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneSoreng RJ et al. 2003 & on
Soreng RJ, G Davidse, PM Peterson, FO Zuloaga, EJ Judziewicz, TS Filgueiras & O Morrone 2003 and onwards. On-line taxonomic novelties and updates, distributional additions and corrections, and editorial changes since the four published volumes of the Catalogue of New World Grasses (Poaceae) published in Contributions from the United States National Herbarium Vols. 39, 41, 46, and 48. Internet Catalogue of New World Grasses http://www.tropicos.org/Project/CNWG


Genome Information

Go to NCBI genomic BLAST page for Zea mays
Genome view: 11 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND EST OTHER PCR PRIMERWALK RT-PCR SHOTGUN TRANSPOSON WGS ALL
AGI - Arizona Genomics Institute
- 207,212 366,389 - - - - - - - 573,601
BI - Broad Insititute
- - - 18 - - - 678,010 768 - 678,796
CUGI - Clemson University Genomics Institute
- - - - - - - 27,936 - - 27,936
INDIVIDUAL - Direct submission from individual investigator
- - - - - - - 318 - - 318
ISUCPG - Iowa State University Center for Plant Genomics
288,992 - 65,500 - - - - - - - 354,492
JCVI - J. Craig Venter Institute
- 120,504 - - - - - 1,210,000 - 51,493 1,381,997
JGI - Joint Genome Institute, U.S. Department of Energy
- - - - - - - - - 1,124,441 1,124,441
PGIR - Plant Genome Initiative at Rutgers
- 282,718 - - - - - 42,595 - - 325,313
SGTC - Stanford Genome Technology Center
- - - - - - - - 133,873 - 133,873
TIGR - The Institute for Genome Research
- - - - - - - 6,398 - - 6,398
WU-LCG - Washington University Laboratory for Computational Genomics
- - - - - - 160 - - - 160
WUGSC - Washington University, Genome Sequencing Center
- 1,116,285 - - 151,675 1,121,853 - 27,518,286 - - 29,908,099
Totals per type
288,992 1,726,719 431,889 18 151,675 1,121,853 160 29,483,543 134,641 1,175,934 34,515,424

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
dryaddb supplemental materials Dryad Digital Repository
Zea mays L. taxonomy/phylogenetic Encyclopedia of life
GOLDCARD: Gr0040007 organism-specific Genomes On Line Database
GOLDCARD: Gi0024741 organism-specific
GOLDCARD: Gi0044995 organism-specific
GOLDCARD: Gi0063136 organism-specific
GOLDCARD: Gi0071612 organism-specific
GOLDCARD: Gi07197 organism-specific
GOLDCARD: Gi07210 organism-specific
GOLDCARD: Gi07625 organism-specific
GOLDCARD: Gr0040803 organism-specific
GOLDCARD: Gr0040804 organism-specific
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Zea mays L. taxonomy/phylogenetic Integrated Taxonomic Information System
MaizeGDB - Maize Genetics & Genomics Database taxonomy/phylogenetic NCBI taxonomy bookmarks
Panzea - Genetic Architecture of Maize taxonomy/phylogenetic
Zea mays subsp. mays taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Zea mays taxonomy/phylogenetic
corn nematodes taxonomy/phylogenetic Plant and Insect Parasitic Nematodes
Zea mays taxonomy/phylogenetic The International Plant Names Index
Zea mays taxonomy/phylogenetic TreeBase
USDAcgc organism-specific USDA Crop Germplasm Committee Reports
Zea mays L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
Zea mays subsp. mays taxonomy/phylogenetic
Zea mays var. japonica (Van Houtte) Alph. Wood taxonomy/phylogenetic
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Zea mays Palomero organism-specific WebScipio - eukaryotic gene identification
WebScipio: Zea mays organism-specific
diArk: Zea mays organism-specific diArk a resource for eukaryotic genome research
diArk: Zea mays Z59 organism-specific
diArk: Zea mays Palomero organism-specific
diArk: Zea mays B73 organism-specific
Zea mays taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.
To see LinkOut links in this lineage click here

Information from sequence entries

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