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Taxonomy browser (Xylella fastidiosa)

Xylella fastidiosa

Taxonomy ID: 2371 (for references in articles please use NCBI:txid2371)
current name
Xylella fastidiosa Wells et al. 1987
type strain of Xylella fastidiosa: personal::PCE-RR, ATCC:35879, DSM:10026, ICPB:50025, ICMP:15197, BCCM/LMG:17159
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 36,088 11,083 307
Protein 300,810 131,032 -
Structure 28 5 -
Genome 1 1 -
Popset 107 103 -
Conserved Domains 1 1 -
GEO Datasets 352 294 -
PubMed Central 2,274 2,274 -
Gene 18,102 2,949 -
SRA Experiments 890 508 -
Protein Clusters 2,187 2,187 -
Identical Protein Groups 60,726 47,886 -
BioProject 162 66 -
BioSample 895 506 7
Assembly 239 53 5
Taxonomy 26 1 -

Comments and References:

image:Xylella fastidiosa
Chen J et al. (2020), doi:10.1007/s00284-020-01937-0
Chen, J., O'Leary, M., Burbank, L., Zheng, Z., and Deng, X. "Whole genome sequence of Xylella fastidiosa ATCC 35879(T) and detection of genome rearrangements within subsp. fastidiosa." Curr. Microbiol. (2020) 77(8):1858-1863.
Mehta A & Rosato YB (2001)
Mehta, A., and Rosato, Y.B. "Phylogenetic relationships of Xylella fastidiosa strains from different hosts, based on 16S rDNA and 16S-23S intergenic spacer sequences." Int. J. Syst. Evol. Microbiol. (2001) 51:311-318.
Wells JM et al. (1987)
Wells, J.M., Raju, B.C., Hung, H.Y., Weisburg, W.G., Mandelco-Paul, L., and Brenner, D.J. "Xylella fastidiosa gen. nov., sp. nov.: gram-negative, xylem-limited, fastidious plant bacteria related to Xanthomonas spp." Int. J. Syst. Bacteriol. (1987) 37:136-143. [No PubMed record available.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Xylella fastidiosa meta-databases BacDive
4 records from this provider organism-specific BioCyc
Xylella fastidiosa Wells et al. 1987 taxonomy/phylogenetic Encyclopedia of life
16 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Xylella fastidiosa culture/stock collections Global Catalogue of Microorganisms
16 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Xylella fastidiosa taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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