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Taxonomy browser (Mus musculus)

Mus musculus

Taxonomy ID: 10090
Genbank common name: house mouse
Inherited blast name: rodents
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Other names:
common name: mouse
includes: transgenic mice
includes: nude mice
includes: LK3 transgenic mice
includes: Mus sp. 129SV
misnomer: Mus muscaris
Lineage( full )
cellular organisms; Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,746,150 1,741,551
Nucleotide EST 4,852,144 4,852,072
Nucleotide GSS 2,769,256 2,431,598
Protein 257,544 256,133
Structure 2,672 2,672
Genome Sequences 47 43
Genome Projects 1 1
Popset 7,946 7,927
SNP 14,368,374 14,368,374
3D Domains 12,268 12,268
Domains 7 7
GEO Datasets 5,262 5,259
GEO Expressions 17,035,020 17,035,020
UniGene 78,617 78,617
UniSTS 63,009 63,009
PubMed Central 4,985 4,615
Gene 61,264 61,195
HomoloGene 19,026 19,026
SRA Experiments 254 253
Taxonomy 12 1

Comments and References:

Note: Some journals identify organisms only with vernacular names like "mouse" or "rats". Currently, an organism idenitified as "mouse" will be found under the name "Mus sp." although we are aware that most of the corresponding sequence records are likely to be from "Mus musculus". If it is important to see all records for "Mus musculus", you should therefore consider retrieving the records for "Mus sp." as well.


Genome Information

See the NCBI Genome homepage
Go to NCBI genomic BLAST page for Mus musculus
Genome view: 21 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 X Y
See the Mitochondrion Genome
See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
CHIP CLONEEND EST FINISHING OTHER PCR PRIMERWALK RT-PCR SHOTGUN TRANSPOSON WGS ALL
ABC - Agencourt Bioscience Corporation
- - 223,733 - - - - - - - - 223,733
BCCAGSC - British Columbia Cancer Agency Genome Sciences Centre
- - - - - - - 83,712 - - - 83,712
BCM - Baylor College of Medicine
- - - - - - - - 1,535,028 - 30,911 1,565,939
CODON - Codon Devices
- - - - - - 4,510 - - - - 4,510
CRA - Celera Genomics
- - - - - - - - - - 27,161,241 27,161,241
HPGC - Albert Einstein College of Medicine
- - - 19,363 - - - - 1,018,999 - - 1,038,362
IMBGA - Institute of Molecular Biotechnology Genome Analysis
- 176 - - - - - - 1,888 - - 2,064
INCYTE - Incyte Genomics
- - 306,248 - - - - - - - - 306,248
NIA - National Institute on Aging
- - 212,039 - - - - - - - - 212,039
NISC - NIH Intramural Sequencing Center
- - - - - - - - 605,010 - - 605,010
PERLEGEN - Perlegen Sciences
59,749,056 - - - - - - - - - - 59,749,056
SC - The Sanger Centre
- 930,530 - - - 7,545 453,007 - 20,700,564 8,642 7,033,731 29,134,019
TIGR - The Institute for Genome Research
- 392,773 - - - - - - - - - 392,773
UCSF
- - - - - - - 13,418 - - - 13,418
UIACBCB - University of Iowa Center for Bioinformatics and Computation Biology
- - 370,823 - - - - - - - - 370,823
UOKNOR - University of Oklahoma Norman Campus, Advanced Center for Genome Technology
- - - 20,073 - - - - 933,280 - - 953,353
UUGC - University of Utah Genome Center
- - - - - - - - - - 591,606 591,606
WIBR - Whitehead Institute for Biomedical Research/MIT
- 2,062,578 - - 74,133 80,280 504,473 - 26,538,178 2,790,990 20,454,062 52,504,694
WUGSC - Washington University, Genome Sequencing Center
- 8,014 580,341 60,489 8 45,535 79,313 - 20,147,505 - 11,342,839 32,264,044
Totals per type
59,749,056 3,394,071 1,693,184 99,925 74,141 133,360 1,041,303 97,130 71,480,452 2,799,632 66,614,390 207,176,644

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mus musculus taxonomy/phylogenetic Animal Diversity Web
Mus musculus LinnA%A6us, 1758 taxonomy/phylogenetic AnimalBase
Mus musculus LinnA%A6us, 1758 taxonomy/phylogenetic
Mus musculus taxonomy taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Mus musculus taxonomy/phylogenetic Barcodes of Life
Mus musculus taxonomy/phylogenetic Catalog of Life
DigiMorph images Digital Morphology
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Encyclopedia of life
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Mus musculus taxonomy/phylogenetic Index to Organism Names
Mus musculus Linnaeus 0 taxonomy/phylogenetic
Mus musculus Linnaeus 1758 taxonomy/phylogenetic
Mus musculus Linnaeus 1766 taxonomy/phylogenetic
Mus musculus Linnaeus, 1758 taxonomy/phylogenetic Integrated Taxonomic Information System
Mus musculus taxonomy/phylogenetic Mammal Species of the World
MamTex taxonomy/phylogenetic Mammals of Texas
mouse genome resources NCBI Genome Guide
NCBI Mitochondria NCBI Mitochondrial Genomes
Coat Colors of Mice (WK Silvers) NCBI taxonomy bookmarks
Mouse Genome Informatics (Jackson Lab)
house mouse strains (BAC proposal) taxonomy/phylogenetic NHGRI genome proposal white papers
male mouse (BAC proposal) taxonomy/phylogenetic
Sanger companies/research institutes The Sanger Centre
mouse Trans-NIH Model Organism Initiative
Mus musculus taxonomy/phylogenetic TreeBase
UCSCgb sequence screening/similarity/alignment UCSC Genome Browser
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.
To see LinkOut links in this lineage click here

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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