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Taxonomy browser (Treponema)

Treponema

Taxonomy ID: 157 (for references in articles please use NCBI:txid157)
current name
Treponema Schaudinn 1905 (Approved Lists 1980) Schaudinn 1905 in [Skerman VBD et al. (1980)]
homotypic synonym:
"Spironema" Vuillemin 1905, effective name 1)
Treponema Schaudinn 1905 emend Abt et al. 2013, emended name 2)
NCBI BLAST name: spirochetes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Microspironema" Stiles and Pfender 1905, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 64,027 102
Protein 1,205,760 11,708
Structure 79 -
Genome 32 1
Popset 201 120
Conserved Domains 18 8
GEO Datasets 129 -
PubMed Central 17,556 17,550
Gene 39,616 -
SRA Experiments 4,843 73
Protein Clusters 9,287 294
Identical Protein Groups 1,573,326 11,704
BioProject 281 2
BioSample 7,151 73
Assembly 2,275 -
Genetic Testing Registry 1 -
PubChem BioAssay 11 -
Taxonomy 637 1

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Treponema (LPSN link)
Abt B et al. (2013)
Abt, B., Göker, M., Scheuner, C., Han, C., Lu, M., Misra, M., Lapidus, A., Nolan, M., Lucas, S., Hammon, N., Deshpande, S., Cheng, J.-F., Tapia, R., Goodwin, L.A., Pitluck, S., Liolios, K., Pagani, I., Ivanova, N., Mavromatis, K., Mikhailova, N., Huntemann, M., Pati, A., Chen, A., Palaniappan, K., Land, M., Hauser, L, Jeffries, C.D., Rohde, M., Spring, S., Gronow, S., Detter, J.C., Bristow, J., Eisen, J.A., Markowitz, V., Hugenholtz, P., Kyrpides, N.C., Woyke, T., Klenk, H.-P. "Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta, and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema." Stand. Genomic Sci. (2013) 8(1):88-105.
Choi BK et al. (1997)
Choi, B.K., Nattermann, H., Grund, S., Haider, W., and Gobel, U.B. "Spirochetes from digital dermatitis lesions in cattle are closely related to treponemes associated with human periodontitis." Int. J. Syst. Bacteriol. (1997) 47:175-181.
List of Changes in Taxonomic Opinion No. 19 (2014)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2014) 64:8-10. [Erratum: Int. J. Syst. Evol. Microbiol. (2014) 64:2508.]
Paster BJ et al. (1998)
Paster, B.J., Dewhirst, F.E., Coleman, B.C., Lau, C.N., and Ericson, R.L. "Phylogenetic analysis of cultivable oral treponemes from the Smibert collection." Int. J. Syst. Bacteriol. (1998) 48:713-722.
Schaudinn F (1905)
Schaudinn, F. "Korrespondenzen." Deutsche Medizinische Wochenschrift (1905) 31:1728. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Treponema taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
62 records from this provider organism-specific Integrated Microbial Genomes
Treponema taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Treponema taxonomy/phylogenetic Ocean Biogeographic Information System
Treponema taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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