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Taxonomy browser (Gordonibacter urolithinfaciens)

Gordonibacter urolithinfaciens

Taxonomy ID: 1335613 (for references in articles please use NCBI:txid1335613)
current name
Gordonibacter urolithinfaciens Selma et al. 2014
type strain of Gordonibacter urolithinfaciens: personal::CEBAS 1/15P, DSM:27213, CCUG:64261
includes:
Gordonibacter sp. CEBAS 1/15P
NCBI BLAST name: actinobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Gordonibacter faecihominis Jin et al. 2015
type strain of Gordonibacter faecihominis: personal::CAT-2, KCTC:15204, JCM:16058
includes:
Gordonibacter sp. CAT-2
heterotypic synonym
Gordonibacter sp. ResAG-26
heterotypic synonym
Gordonibacter sp. ResAG-43
heterotypic synonym
Gordonibacter sp. ResAG-5
heterotypic synonym
Gordonibacter sp. ResAG-50
heterotypic synonym
Gordonibacter sp. ResAG-59
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Gordonibacter
   Entrez records   
Database name Direct links Links from type
Nucleotide 2,657 89
Protein 19,253 -
Genome 1 -
Popset 1 -
PubMed Central 94 -
Gene 9,191 -
SRA Experiments 12 -
Identical Protein Groups 16,737 -
BioProject 17 -
BioSample 29 3
Assembly 22 2
Taxonomy 1 -

Comments and References:

Danylec N et al. (2019)
Danylec, N., Stoll, D.A., Dötsch, A., and Huch, M. "Draft genome sequences of type strains of Gordonibacter faecihominis, Paraeggerthella hongkongensis, Parvibacter caecicola, Slackia equolifaciens, Slackia faecicanis, and Slackia isoflavoniconvertens." Microbiol. Resour. Announc. (2019) 8:e01532-18.
VALIDATION LIST No. 161 (2015)
Validation List No. 160: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2015) 65:1-4.
Danylec N et al. (2019b)
Danylec, N., Stoll, D.A., and Huch, M. "Gordonibacter faecihominis is a later heterotypic synonym of Gordonibacter urolithinfaciens." Int. J. Syst. Evol. Microbiol. (2019) 69:2527-2532.
Martinez-Blanch JF et al. (2017)
Martinez-Blanch, J.F., Ramon, D., Beltran, D., Romo-Vaquero, M., Garcia-Villalba, R., Espin, J.C., Tomas-Barberan, F.A., Codoner, F.M., and Selma M.V. "Complete genome sequence of the new urolithin-producing bacterium Gordonibacter urolithinfaciens DSM 27213T." Genome Announc. (2017) 5:e01120-17.
Jin JS et al. (2014)
Jin, J.-S., Lee, K.C., Park, I.-S., Kim, K.K., Ahn, J.S., Benno, Y., Hattori, M., and Lee, J.-S. "Gordonibacter faecihominis sp. nov., isolated from human faeces." Antonie van Leeuwenhoek (2014) 106:439-447.
Selma MV et al. (2014)
Selma, M.V., Tomas-Barberan, F.A., Beltran, D., GarcIa-Villalba, R., and Espin, J.C. "Gordonibacter urolithinfaciens sp. nov., a urolithin-producing bacterium isolated from the human gut." Int. J. Syst. Evol. Microbiol. (2014) 64:2346-2352.

External Information Resources (NCBI LinkOut)

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Gordonibacter urolithinfaciens meta-databases BacDive
2 records from this provider organism-specific BioCyc
2 records from this provider organism-specific Genomes On Line Database
13 records from provider organism-specific Integrated Microbial Genomes
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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