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Biotechnology Information

6GZ4: tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

PDB ID:	6GZ4 Download
MMDB ID:	171552
PDB Deposition Date:	2018/7/3
Updated in MMDB:	2021/02
Experimental Method:	electron microscopy
Resolution:	3.6 Å
Source Organism:	Oryctolagus cuniculus
Similar Structures:

Biological Unit for 6GZ4: 86-meric; determined by author

Molecular Components in 6GZ4
Label	Count	Molecule
Proteins (79 molecules)
AA	1	Ribosomal Protein UL2
BA	1	Ribosomal Protein US2
AB	1	Ribosomal Protein UL3
BB	1	Ribosomal Protein ES1
AC	1	Ribosomal Protein UL4
BC	1	Ribosomal Protein Es28
BD	1	Ribosomal Protein US3
BF	1	Ribosomal Protein US7
BK	1	Ribosomal Protein Es10
BM	1	Ribosomal Protein Es12
BP	1	Ribosomal Protein Us19
BQ	1	Ribosomal Protein US9
BR	1	Ribosomal Protein Es17
BS	1	Ribosomal Protein Us13
BT	1	Ribosomal Protein Es19
BU	1	Ribosomal Protein Us10
BZ	1	Ribosomal Protein Us10
Bc	1	Ribosomal Protein Es28
Bd	1	Ribosomal Protein Us14
Bf	1	Ribosomal Protein Es31
Bg	1	Ribosomal Protein Rack 1
BE	1	Ribosomal Protein ES4
BG	1	Ribosomal Protein ES6
BH	1	Ribosomal Protein ES7
BI	1	Ribosomal Protein ES8
BJ	1	Ribosomal Protein US4
BL	1	Ribosomal Protein Us17
BN	1	Ribosomal Protein Us15
BO	1	Ribosomal Protein Us11
BV	1	Ribosomal Protein Es21
BW	1	Ribosomal Protein US8
BX	1	Ribosomal Protein Us12
BY	1	Ribosomal Protein Es24
Ba	1	Ribosomal Protein Es26
Bb	1	Ribosomal Protein Es27
Be	1	Ribosomal Protein Es30
AD	1	Ribosomal Protein Ul18
AE	1	Ribosomal Protein EL6
AF	1	Ribosomal Protein Ul30
AG	1	Ribosomal Protein EL8
AH	1	Ribosomal Protein UL6
AI	1	Ribosomal Protein Ul16
AJ	1	Ribosomal Protein UL5
AL	1	Ribosomal Protein El13
AM	1	Ribosomal Protein El14
AN	1	Ribosomal Protein El15
AO	1	Ribosomal Protein Ul13
AP	1	Ribosomal Protein Ul22
AQ	1	Ribosomal Protein El18
AR	1	Ribosomal Protein El19
AS	1	Ribosomal Protein El20
AT	1	Ribosomal Protein El21
AU	1	Ribosomal Protein El22
AV	1	Ribosomal Protein Ul14
AW	1	Ribosomal Protein El24
AX	1	Ribosomal Protein Ul23
AY	1	Ribosomal Protein Ul24
AZ	1	Ribosomal Protein El27
Aa	1	Ribosomal Protein Ul15
Ab	1	Ribosomal Protein El29
Ac	1	Ribosomal Protein El30
Ad	1	Ribosomal Protein El31
Ae	1	Ribosomal Protein El32
Af	1	Ribosomal Protein El33
Ag	1	Ribosomal Protein El34
Ah	1	Ribosomal Protein Ul29
Ai	1	Ribosomal Protein El36
Aj	1	Ribosomal Protein El37
Ak	1	Ribosomal Protein El38
Al	1	Ribosomal Protein El39
Am	1	Ribosomal Protein El40
An	1	Ribosomal Protein El41
Ao	1	Ribosomal Protein El42
Ap	1	Ribosomal Protein El43
At	1	Ribosomal Protein El28
Au	1	Ribosomal Protein UL1
Aq	1	Ribosomal Protein Ul11
AK	1	Ribosomal Protein Ul10
Ct	1	Eukaryotic Elongation Factor 2 (Eef2)
Nucleotides(7 molecules)
A2	1	28S Ribosomal RNA
Bv	1	Ap/p-site tRNA
Bx	1	mRNA
Bw	1	Pe/e-site-trna
B1	1	18S Ribosomal RNA
A3	1	5.8s Ribosomal RNA
A4	1	5S Ribosomal RNA
Chemicals and Non-standard biopolymers (333 molecules)
1	327	MAGNESIUM ION
2	5	ZINC ION
3	1	PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303