6QTP: 2.37A structure of gepotidacin with S.aureus DNA gyrase and uncleaved DNA

PDB ID: 6QTPDownload
MMDB ID: 173250
PDB Deposition Date: 2019/2/25
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 2.37  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6QTP: hexameric; determined by author and by software (PISA)
Molecular Components in 6QTP
Label Count Molecule
Proteins (4 molecules)
2
DNA Gyrase Subunit B,dna Gyrase Subunit B
Molecule annotation
2
DNA Gyrase Subunit a
Molecule annotation
Nucleotides(2 molecules)
2
DNA (5'-d(*gp*ap*gp*cp*gp*tp*ap*cp*ap*gp*cp*tp*gp*tp*ap*cp*gp*cp*tp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
MANGANESE (II) IONMANGANESE (II) ION
2
1
SODIUM IONSODIUM ION
3
1
GLYCEROLGLYCEROL
4
1
SULFATE IONSULFATE ION
5
1
(3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione(3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303