6P09: Human DNA Ligase 1 Bound to an Adenylated, dideoxy Terminated DNA nick with 200 mM Mg2+

PDB ID: 6P09Download
MMDB ID: 182121
PDB Deposition Date: 2019/5/16
Updated in MMDB: 2019/12
Experimental Method:
x-ray diffraction
Resolution: 2.052  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6P09: tetrameric; determined by author and by software (PISA)
Molecular Components in 6P09
Label Count Molecule
Protein (1 molecule)
1
DNA Ligase 1
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*tp*c)-3')
Molecule annotation
1
DNA (5'-d(p*gp*tp*cp*gp*gp*ap*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*tp*cp*cp*gp*ap*cp*gp*ap*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
5
MAGNESIUM IONMAGNESIUM ION
2
1
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
1
ADENOSINE MONOPHOSPHATEADENOSINE MONOPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303