5KFP: Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 20 mM Mg2+ for 600s

PDB ID: 5KFPDownload
MMDB ID: 140346
PDB Deposition Date: 2016/6/12
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 5KFP: trimeric; determined by author and by software (PISA)
Molecular Components in 5KFP
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase ETA
(Gene symbol: POLH)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*cp*ap*tp*tp*ap*tp*gp*ap*cp*gp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(*ap*gp*cp*gp*tp*cp*ap*tp*(ds))-3')
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
3
MAGNESIUM IONMAGNESIUM ION
2
1
CALCIUM IONCALCIUM ION
3
3
GLYCEROLGLYCEROL
4
1
2'-DEOXYADENOSINE 5'-O-(1-THIOTRIPHOSPHATE)2'-DEOXYADENOSINE 5'-O-(1-THIOTRIPHOSPHATE)
5
1
DIPHOSPHATEDIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303