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5D4S:
Crystal Structure of AraR(DBD) in complex with operator ORX1
PDB ID:
5D4S
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MMDB ID:
133942
PDB Deposition Date:
2015/8/8
Updated in MMDB:
2023/11
Experimental Method:
x-ray diffraction
Resolution:
1.972 Å
Source Organism:
Bacillus subtilis subsp. subtilis str. 168
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Taxonomy
Molecule
Bacillus subtilis subsp. subtilis str. 168
A, B
synthetic construct
T, U
Similar Structures:
VAST+
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Molecular Components in 5D4S
Label
Count
Molecule
Proteins (2 molecules)
A
B
2
Arabinose Metabolism Transcriptional Repressor
Nucleotides(2 molecules)
T
1
DNA (5'-d(*tp*ap*ap*tp*ap*tp*tp*tp*gp*tp*ap*cp*gp*tp*ap*tp*gp*tp*ap*tp*t)-3')
U
1
DNA (5'-d(*ap*ap*ap*tp*ap*cp*ap*tp*ap*cp*gp*tp*ap*cp*ap*ap*ap*tp*ap*tp*t)-3')
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303