4F0K: Unactivated Rubisco With Magnesium and Carbon Dioxide Bound

Citation:
Abstract
Ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is a crucial enzyme in carbon fixation and the most abundant protein on earth. It has been studied extensively by biochemical and structural methods; however, the most essential activation step has not yet been described. Here, we describe the mechanistic details of Lys carbamylation that leads to RuBisCO activation by atmospheric CO(2). We report two crystal structures of nitrosylated RuBisCO from the red algae Galdieria sulphuraria with O(2) and CO(2) bound at the active site. G. sulphuraria RuBisCO is inhibited by cysteine nitrosylation that results in trapping of these gaseous ligands. The structure with CO(2) defines an elusive, preactivation complex that contains a metal cation Mg(2+) surrounded by three H(2)O/OH molecules. Both structures suggest the mechanism for discriminating gaseous ligands by their quadrupole electric moments. We describe conformational changes that allow for intermittent binding of the metal ion required for activation. On the basis of these structures we propose the individual steps of the activation mechanism. Knowledge of all these elements is indispensable for engineering RuBisCO into a more efficient enzyme for crop enhancement or as a remedy to global warming.
PDB ID: 4F0KDownload
MMDB ID: 105052
PDB Deposition Date: 2012/5/4
Updated in MMDB: 2012/12 
Experimental Method:
x-ray diffraction
Resolution: 2.05  Å
Source Organism:
Similar Structures:
Biological Unit for 4F0K: hexadecameric; determined by author and by software (PISA)
Molecular Components in 4F0K
Label Count Molecule
Proteins (16 molecules)
8
Ribulose Bisphosphate Carboxylase Large Chain
Molecule annotation
8
Ribulose Bisphosphate Carboxylase Small Chain
Molecule annotation
Chemicals (44 molecules)
1
8
2
8
3
23
4
5
* Click molecule labels to explore molecular sequence information.

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