4IO9: Crystal Structure Of Compound 4d Bound To Large Ribosomal Subunit (50s) From Deinococcus Radiodurans

PDB ID: 4IO9Download
MMDB ID: 108209
PDB Deposition Date: 2013/1/7
Updated in MMDB: 2013/03
Experimental Method:
x-ray diffraction
Resolution: 3.2  Å
Source Organism:
Similar Structures:
Biological Unit for 4IO9: 30-meric; determined by author
Molecular Components in 4IO9
Label Count Molecule
Proteins (28 molecules)
1
50S Ribosomal Protein L2
(Gene symbol: rplB)
Molecule annotation
1
50S Ribosomal Protein L3
(Gene symbol: rplC)
Molecule annotation
1
50S Ribosomal Protein L4
(Gene symbol: rplD)
Molecule annotation
1
50S Ribosomal Protein L5
(Gene symbol: rplE)
Molecule annotation
1
50S Ribosomal Protein L6
(Gene symbol: rplF)
Molecule annotation
1
50S Ribosomal Protein L11
(Gene symbol: rplK)
Molecule annotation
1
50S Ribosomal Protein L13
(Gene symbol: rplM)
Molecule annotation
1
50S Ribosomal Protein L14
(Gene symbol: rplN)
Molecule annotation
1
50S Ribosomal Protein L15
(Gene symbol: rplO)
Molecule annotation
1
50S Ribosomal Protein L16
(Gene symbol: rplP)
Molecule annotation
1
50S Ribosomal Protein L17
(Gene symbol: rplQ)
Molecule annotation
1
50S Ribosomal Protein L18
(Gene symbol: rplR)
Molecule annotation
1
50S Ribosomal Protein L19
(Gene symbol: rplS)
Molecule annotation
1
50S Ribosomal Protein L20
(Gene symbol: rplT)
Molecule annotation
1
50S Ribosomal Protein L21
(Gene symbol: DR_0086)
Molecule annotation
1
50S Ribosomal Protein L22
(Gene symbol: rplV)
Molecule annotation
1
50S Ribosomal Protein L23
(Gene symbol: rplW)
Molecule annotation
1
50S Ribosomal Protein L24
(Gene symbol: rplX)
Molecule annotation
1
50S Ribosomal Protein L25
(Gene symbol: DR_0427)
Molecule annotation
1
50S Ribosomal Protein L27
(Gene symbol: rpmA)
Molecule annotation
1
50S Ribosomal Protein L28
(Gene symbol: rpmB)
Molecule annotation
1
50S Ribosomal Protein L29
(Gene symbol: DR_0319)
Molecule annotation
1
50S Ribosomal Protein L30
(Gene symbol: rpmD)
Molecule annotation
1
50S Ribosomal Protein L32
(Gene symbol: rpmF)
Molecule annotation
1
50S Ribosomal Protein L33
(Gene symbol: rpmG)
Molecule annotation
1
50S Ribosomal Protein L34
(Gene symbol: rpmH)
Molecule annotation
1
50S Ribosomal Protein L35
(Gene symbol: rpmI)
Molecule annotation
1
50S Ribosomal Protein L36
(Gene symbol: rpmJ)
Molecule annotation
Nucleotides(2 molecules)
1
23S Ribosomal RNA
Molecule annotation
1
5S Ribosomal RNA
Molecule annotation
Chemicals and Non-standard biopolymers (36 molecules)
1
35
Magnesium IonMagnesium Ion
2
1
(3as,4r,7r,8s,9s,10r,11r,13r,15r,15ar)-4-Ethyl-11-Methoxy-3a,7,9,11,13,15-Hexamethyl-2,6,14-Trioxo-10-{[3,4,6-Trideoxy-3-(Dimethylamino)-Beta-D-Xylo-Hexopyranosyl]oxy}tetradecahydro-2h-Oxacyclotetradecino[4,3-D][1,3]oxazol-8-Yl (2r)-2-(Pyridin-3-Yl)pyrrolidine-1-Carboxylate(3as,4r,7r,8s,9s,10r,11r,13r,15r,15ar)-4-Ethyl-11-Methoxy-3a,7,9,11,13,15-Hexamethyl-2,6,14-Trioxo-10-{[3,4,6-Trideoxy-3-(Dimethylamino)-Beta-D-Xylo-Hexopyranosyl]oxy}tetradecahydro-2h-Oxacyclotetradecino[4,3-D][1,3]oxazol-8-Yl (2r)-2-(Pyridin-3-Yl)pyrrolidine-1-Carboxylate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303