Crystal Structure of Wild Type Lactococcus Lactis FPG Complexed to a 1,3 Propanediol Containing DNA
MMDB ID: 105324PDB ID: 1PJIhelp
PDB Deposition Date: 2003/6/3help
Updated in MMDB: 11/2012  help
Experimental Method:
X-Ray Diffraction help
Resolution: 1.9  Åhelp
Source Organism:
Lactococcus lactis ▼help
Similar Structures: help
  • help
Biological Unit: trimeric; determined by authorhelp
Interactions?
schmatic for structure MMDB ID=105324 biounit 1
Molecular Graphic ?
Molecular graphic for MMDB ID 105324 biounit 1
View or Save 3D Structure ?
File Format:
Display As:
Data Set:
Notice
ProteinNucleotideChemical
Molecules and interactionshelp
Label Count Molecule Interactions
Protein and interactions (1 molecule)
1
Formamidopyrimidine-dna Glycosylase
Show annotation
  • DNA (5'-d(*cp*tp*cp*tp*tp*tp*(pdi)p*tp*tp*tp*cp*tp
    *cp*g)-3 3')
  • DNA (5'-d(*gp*cp*gp*ap*gp*ap*ap*ap*cp*ap*ap*ap*gp*
    a)-3')
  • Glycerol
  • Zinc Ion
Nucleotides and interactions (2 molecules)
1
DNA (5'-d(*cp*tp*cp*tp*tp*tp*(pdi)p*tp*tp*tp*cp*tp
*cp*g)-3 3')
  • DNA (5'-d(*gp*cp*gp*ap*gp*ap*ap*ap*cp*ap*ap*ap*gp*
    a)-3')
  • Formamidopyrimidine-dna Glycosylase
  • Glycerol
1
DNA (5'-d(*gp*cp*gp*ap*gp*ap*ap*ap*cp*ap*ap*ap*gp*
a)-3')
  • DNA (5'-d(*cp*tp*cp*tp*tp*tp*(pdi)p*tp*tp*tp*cp*tp
    *cp*g)-3 3')
  • Formamidopyrimidine-dna Glycosylase
  • Glycerol
Chemicals and interactions (5 molecules)
 -Click for PubChem compound information. 1
  • Formamidopyrimidine-dna Glycosylase
 -Click for PubChem compound information. 4
  • DNA (5'-d(*cp*tp*cp*tp*tp*tp*(pdi)p*tp*tp*tp*cp*tp
    *cp*g)-3 3')
  • DNA (5'-d(*gp*cp*gp*ap*gp*ap*ap*ap*cp*ap*ap*ap*gp*
    a)-3')
  • Formamidopyrimidine-dna Glycosylase
  • Glycerol
* Click molecule labels to explore molecular sequence information.

Citing MMDB
Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH. "MMDB: 3D structures and macromolecular interactions." Nucleic Acids Res. 2012 Jan; 40(Database issue):D461-4
.
| Help Desk | Disclaimer | Privacy statement | Accessibility |