Crystal Structure of Alkb E136l Mutant Protein With Cofactors Bound to Dsdna Containing M6a/a
MMDB ID: 119219PDB ID: 4NIHhelp
PDB Deposition Date: 2013/11/6help
Updated in MMDB: 05/2014  help
Experimental Method:
X-Ray Diffraction help
Resolution: 1.37  Åhelp
Source Organism:
synthetic construct ▼help
Similar Structures: help
  • help
Biological Unit: trimeric; determined by author, and by software (PISA)help
Interactions?
schmatic for structure MMDB ID=119219 biounit 1
Molecular Graphic ?
Molecular graphic for MMDB ID 119219 biounit 1
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ProteinNucleotideChemical
Molecules and interactionshelp
Label Count Molecule Interactions
Protein and interactions (1 molecule)
1
Alpha-ketoglutarate-dependent Dioxygenase Alkb
Show annotation
  • 2-Oxoglutaric Acid
  • 5'-d(*ap*ap*cp*gp*gp*tp*ap*tp*tp*ap*cp*cp*t)-3'
  • 5'-d(*tp*ap*gp*gp*tp*ap*ap*(6ma)p*ap*cp*cp*gp*t)-3'
  • Glycerol
  • Manganese (Ii) Ion
Nucleotides and interactions (2 molecules)
1
5'-d(*tp*ap*gp*gp*tp*ap*ap*(6ma)p*ap*cp*cp*gp*t)-3'
  • 2-Oxoglutaric Acid
  • 5'-d(*ap*ap*cp*gp*gp*tp*ap*tp*tp*ap*cp*cp*t)-3'
  • Alpha-ketoglutarate-dependent Dioxygenase Alkb
1
5'-d(*ap*ap*cp*gp*gp*tp*ap*tp*tp*ap*cp*cp*t)-3'
  • 5'-d(*tp*ap*gp*gp*tp*ap*ap*(6ma)p*ap*cp*cp*gp*t)-3'
  • Alpha-ketoglutarate-dependent Dioxygenase Alkb
Chemicals and interactions (3 molecules)
 -Click for PubChem compound information. 1
  • 2-Oxoglutaric Acid
  • Alpha-ketoglutarate-dependent Dioxygenase Alkb
 -Click for PubChem compound information. 1
  • 5'-d(*tp*ap*gp*gp*tp*ap*ap*(6ma)p*ap*cp*cp*gp*t)-3'
  • Alpha-ketoglutarate-dependent Dioxygenase Alkb
  • Manganese (Ii) Ion
 -Click for PubChem compound information. 1
  • Alpha-ketoglutarate-dependent Dioxygenase Alkb
* Click molecule labels to explore molecular sequence information.

Citing MMDB
Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH. "MMDB: 3D structures and macromolecular interactions." Nucleic Acids Res. 2012 Jan; 40(Database issue):D461-4
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