KOD Polymerase in Binary Complex With Dsdna
MMDB ID: 111336PDB ID: 4K8Zhelp
PDB Deposition Date: 2013/4/19help
Updated in MMDB: 06/2013help
Experimental Method:
X-Ray Diffraction help
Resolution: 2.29  Åhelp
Source Organism:
Thermococcus kodakarensis KOD1help
Similar Structures: help
Citation: help
Bergen K, Betz K, Welte W, Diederichs K, Marx A
Chembiochem (2013) 14 p.1058
  • help
Biological Unit: trimeric; determined by author, and by software (PISA)help
Interactions?
schmatic for structure MMDB ID=111336 biounit 1
Molecular Graphic ?
Molecular graphic for MMDB ID 111336 biounit 1
View or Save 3D Structure ?
File Format:
Display As:
Data Set:
Notice
ProteinNucleotideChemical
Molecules and interactionshelp
Label Count Molecule Interactions
Protein and interactions (1 molecule)
1
DNA Polymerase
Show annotation
  • Cobalt Hexammine(Iii)
  • DNA (5'-d(*ap*ap*ap*tp*tp*cp*gp*cp*ap*gp*tp*tp*cp*
    gp*cp*g)-9 3')
  • DNA (5'-d(*cp*gp*cp*gp*ap*ap*cp*tp*gp*cp*gp*(2da))
    -3')
  • Ethylene Glycol
Nucleotides and interactions (2 molecules)
1
DNA (5'-d(*ap*ap*ap*tp*tp*cp*gp*cp*ap*gp*tp*tp*cp*
gp*cp*g)-9 3')
  • DNA (5'-d(*cp*gp*cp*gp*ap*ap*cp*tp*gp*cp*gp*(2da))
    -3')
  • DNA Polymerase
  • Magnesium Ion
1
DNA (5'-d(*cp*gp*cp*gp*ap*ap*cp*tp*gp*cp*gp*(2da))
-3')
  • DNA (5'-d(*ap*ap*ap*tp*tp*cp*gp*cp*ap*gp*tp*tp*cp*
    gp*cp*g)-9 3')
  • DNA Polymerase
Chemicals and interactions (4 molecules)
 -Click for PubChem compound information. 1
  • DNA Polymerase
 -Click for PubChem compound information. 2
  • DNA Polymerase
 -Click for PubChem compound information. 1
  • DNA (5'-d(*ap*ap*ap*tp*tp*cp*gp*cp*ap*gp*tp*tp*cp*
    gp*cp*g)-9 3')
* Click molecule labels to explore molecular sequence information.

Citing MMDB
Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH. "MMDB: 3D structures and macromolecular interactions." Nucleic Acids Res. 2012 Jan; 40(Database issue):D461-4
.
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