Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in Complex With Magnesium and the Insti Mk0536
MMDB ID: 86319PDB ID: 3OYHhelp
PDB Deposition Date: 2010/9/23help
Updated in MMDB: 05/2011  help
Experimental Method:
X-Ray Diffraction help
Resolution: 2.74  Åhelp
Source Organism:
synthetic construct ▼help
Similar Structures: help
Citation: help
Hare S, Vos AM, Clayton RF, Thuring JW, Cummings MD, Cherepanov P
Proc.Natl.Acad.Sci.Usa (2010) 107 p.20057
  • help
Biological Unit: octameric; determined by author, and by software (PISA)help
Interactions?
schmatic for structure MMDB ID=86319 biounit 1
Molecular Graphic ?
Molecular graphic for MMDB ID 86319 biounit 1
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Data Set:
Notice
ProteinNucleotideChemical
Molecules and interactionshelp
Label Count Molecule Interactions
Proteins and interactions (4 molecules)
4
PFV Integrase
Show annotation
  • Agn-Pc-0Aahtr
  • Ammonium Ion
  • DNA (5'-16 D(*tp*gp*cp*gp*ap*ap*ap*tp*tp*cp*cp*ap*
    tp*gp*ap*cp*a)-3')
  • DNA (5'-9 D(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*t
    p*tp*tp*cp*gp*cp*a)-3')
  • Glycerin
  • Magnesium Ion
  • PFV Integrase
  • Sulfate Ion
  • Zinc Ion
Nucleotides and interactions (4 molecules)
2
DNA (5'-9 D(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*t
p*tp*tp*cp*gp*cp*a)-3')
  • Agn-Pc-0Aahtr
  • DNA (5'-16 D(*tp*gp*cp*gp*ap*ap*ap*tp*tp*cp*cp*ap*
    tp*gp*ap*cp*a)-3')
  • PFV Integrase
2
DNA (5'-16 D(*tp*gp*cp*gp*ap*ap*ap*tp*tp*cp*cp*ap*
tp*gp*ap*cp*a)-3')
  • Agn-Pc-0Aahtr
  • DNA (5'-9 D(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*t
    p*tp*tp*cp*gp*cp*a)-3')
  • PFV Integrase
Chemicals and interactions (24 molecules)
 -Click for PubChem compound information. 2
  • PFV Integrase
 -Click for PubChem compound information. 4
  • PFV Integrase
 -Click for PubChem compound information. 8
  • PFV Integrase
 -Click for PubChem compound information. 2
  • PFV Integrase
 -Click for PubChem compound information. 6
  • Agn-Pc-0Aahtr
  • Magnesium Ion
  • PFV Integrase
 -Click for PubChem compound information. 2
  • DNA (5'-16 D(*tp*gp*cp*gp*ap*ap*ap*tp*tp*cp*cp*ap*
    tp*gp*ap*cp*a)-3')
  • DNA (5'-9 D(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*t
    p*tp*tp*cp*gp*cp*a)-3')
  • Magnesium Ion
  • PFV Integrase
* Click molecule labels to explore molecular sequence information.

Citing MMDB
Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH. "MMDB: 3D structures and macromolecular interactions." Nucleic Acids Res. 2012 Jan; 40(Database issue):D461-4
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