Crystal Structure of the Prototype Foamy Virus (Pfv) Intasome in APO Form
MMDB ID: 80004PDB ID: 3L2Qhelp
PDB Deposition Date: 2009/12/15help
Updated in MMDB: 05/2011  help
Experimental Method:
X-Ray Diffraction help
Resolution: 3.25  Åhelp
Source Organism:
synthetic constructhelp
Similar Structures: help
Citation: help
Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P
Nature (2010) 464 p.232
  • help
Biological Unit: octameric; determined by author, and by software (PISA)help
schmatic for structure MMDB ID=80004 biounit 1
Molecular Graphic ?
Molecular graphic for MMDB ID 80004 biounit 1
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Molecules and interactionshelp
Label Count Molecule Interactions
Proteins and interactions (4 molecules)
Show annotation
  • 5'-15 D(*tp*ap*cp*ap*ap*ap*ap*tp*tp*cp*cp*ap*tp*gp
  • 5'-8 D(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*tp*tp*
    tp*tp*gp*tp*a)9 -3'
  • Glycerol
  • Integrase
  • Zinc Ion
Nucleotides and interactions (4 molecules)
5'-8 D(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*tp*tp*
tp*tp*gp*tp*a)9 -3'
  • 5'-15 D(*tp*ap*cp*ap*ap*ap*ap*tp*tp*cp*cp*ap*tp*gp
  • Integrase
5'-15 D(*tp*ap*cp*ap*ap*ap*ap*tp*tp*cp*cp*ap*tp*gp
  • 5'-8 D(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*tp*tp*
    tp*tp*gp*tp*a)9 -3'
  • Integrase
Chemicals and interactions (8 molecules)
 -Click for PubChem compound information. 2
  • Integrase
 -Click for PubChem compound information. 6
  • Integrase
* Click molecule labels to explore molecular sequence information.

Citing MMDB
Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH. "MMDB: 3D structures and macromolecular interactions." Nucleic Acids Res. 2012 Jan; 40(Database issue):D461-4
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