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3GTQ:
Backtracked RNA polymerase II complex induced by damage
PDB ID:
3GTQ
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MMDB ID:
73192
PDB Deposition Date:
2009/3/27
Updated in MMDB:
2012/12
Experimental Method:
x-ray diffraction
Resolution:
3.8 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
R, T
Saccharomyces cerevisiae
A, B, C, E, F, H, I, J, K, L
Similar Structures:
VAST+
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Biological Unit for 3GTQ: dodecameric; determined by author and by software (PISA)
Molecular Components in 3GTQ
Label
Count
Molecule
Proteins (10 molecules)
A
1
DNA-directed RNA Polymerase II Subunit Rpb1
B
1
DNA-directed RNA Polymerase II Subunit Rpb2
C
1
DNA-directed RNA Polymerase II Subunit Rpb3
E
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
F
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
H
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
I
1
DNA-directed RNA Polymerase II Subunit Rpb9
J
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
K
1
DNA-directed RNA Polymerase II Subunit Rpb11
L
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Nucleotides(2 molecules)
R
1
RNA (5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*gp*ap*gp*c)-3')
T
1
DNA (5'-d(*cp*tp*ap*cp*cp*cp*ap*tp*ap*ap*cp*cp*ap*cp*ap*gp*gp*cp*tp*cp*cp*tp*cp*tp*cp*cp*ap*tp*c)-3')
Chemicals and Non-standard biopolymers (8 molecules)
1
8
ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303