Crystal Structure of Thiamine Pyrophosphate-specific Riboswitch in Complex With Thiamine Pyrophosphate
MMDB ID: 53248PDB ID: 2GDIhelp
PDB Deposition Date: 2006/3/16help
Updated in MMDB: 12/2012  help
Experimental Method:
X-Ray Diffraction help
Resolution: 2.05  Åhelp
Source Organism:
Citation: help
Serganov A, Polonskaia A, Phan AT, Breaker RR, Patel DJ
Nature (2006) 441 p.1167
  • help
Biological Unit: monomeric; determined by authorhelp
schmatic for structure MMDB ID=53248 biounit 1
Molecular Graphic ?
Molecular graphic for MMDB ID 53248 biounit 1
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Data Set:
Molecules and interactionshelp
Label Count Molecule Interactions
Nucleotides and interactions (1 molecule)
TPP Riboswitch
  • Magnesium Ion
  • Potassium Ion
  • Sodium Ion
  • Thiamine Diphosphate
Chemicals and interactions (9 molecules)
 -Click for PubChem compound information. 2
  • TPP Riboswitch
 -Click for PubChem compound information. 3
  • TPP Riboswitch
 -Click for PubChem compound information. 3
  • TPP Riboswitch
  • Thiamine Diphosphate
 -Click for PubChem compound information. 1
  • Magnesium Ion
  • TPP Riboswitch
* Click molecule labels to explore molecular sequence information.

Citing MMDB
Madej T, Addess KJ, Fong JH, Geer LY, Geer RC, Lanczycki CJ, Liu C, Lu S, Marchler-Bauer A, Panchenko AR, Chen J, Thiessen PA, Wang Y, Zhang D, Bryant SH. "MMDB: 3D structures and macromolecular interactions." Nucleic Acids Res. 2012 Jan; 40(Database issue):D461-4
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