Supplementary tables for “Protein homologous cores and loops: important clues to evolutionary relationships between structurally similar proteins”, by T. Madej, A.R. Panchenko, et al.

The tables present the sensitivity values for the similarity measures studied in the paper, with the CD families grouped by the four main SCOP fold classes, and for the 1% and 5% error rates.

Numbers of CDs for the SCOP classes

All β: 34

α/β: 51

α+β: 32

All α: 25

0.01 err	LHM	HCS	GSAS	%aln	%id	RMSD	MI	SI
All β	0.26	0.30	0.06	0.02	0.17	0.07	0.02	0.01
α/β	0.35	0.24	0.23	0.22	0.14	0.22	0.34	0.28
α+β	0.60	0.67	0.66	0.44	0.41	0.27	0.34	0.11
All α	0.27	0.04	0.22	0.11	0.26	0.13	0.30	0.13

0.05 err	LHM	HCS	GSAS	%aln	%id	RMSD	MI	SI
All β	0.50	0.44	0.36	0.20	0.49	0.29	0.21	0.20
α/β	0.53	0.50	0.51	0.45	0.31	0.47	0.48	0.43
α+β	0.77	0.81	0.81	0.74	0.57	0.54	0.57	0.39
All α	0.61	0.32	0.44	0.41	0.45	0.39	0.55	0.36