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Conserved domains on  [gi|1952770629|ref|XP_038412262|]
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dynein intermediate chain 3, axonemal isoform X1 [Canis lupus familiaris]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 10646020)

WD40 repeat domain-containing protein similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; similar to Saccharomyces cerevisiae autophagy-related protein 21 (ATG21) required for cytoplasm to vacuole transport (Cvt) vesicles formation and mitophagy

Gene Ontology:  GO:0005515
PubMed:  10322433

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 482-530 1.77e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


:

Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.91  E-value: 1.77e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1952770629  482 NGHKKVITDIHWLPDtfeinrmgsvfenrsgiCCQLVTCSADCTICFWD 530
Cdd:smart00320   9 KGHTGPVTSVAFSPD-----------------GKYLASGSDDGTIKLWD 40
 
Name Accession Description Interval E-value
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 482-530 1.77e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.91  E-value: 1.77e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1952770629  482 NGHKKVITDIHWLPDtfeinrmgsvfenrsgiCCQLVTCSADCTICFWD 530
Cdd:smart00320   9 KGHTGPVTSVAFSPD-----------------GKYLASGSDDGTIKLWD 40
 
Name Accession Description Interval E-value
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 482-530 1.77e-03

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 36.91  E-value: 1.77e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1952770629  482 NGHKKVITDIHWLPDtfeinrmgsvfenrsgiCCQLVTCSADCTICFWD 530
Cdd:smart00320   9 KGHTGPVTSVAFSPD-----------------GKYLASGSDDGTIKLWD 40
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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