|
Name |
Accession |
Description |
Interval |
E-value |
| UTP15_C |
pfam09384 |
UTP15 C terminal; U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar ... |
344-490 |
3.55e-64 |
|
UTP15 C terminal; U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA. It is a component of the ribosomal small subunit (SSU) processome. UTP15 is needed for optimal pre-ribosomal RNA transcription by RNA polymerase I, together with a subset of U3 proteins required for transcription (t-UTPs). This entry represents the C terminal of UTP15, and is found adjacent to WD40 repeats (pfam00400).
Pssm-ID: 462782 Cd Length: 146 Bit Score: 205.41 E-value: 3.55e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 344 YMKQRDDILINRPSKKHLELYDRDLKNFRVSKALDRVLEPSctIKTPEITVSIIKELNRRGVLANALAGRDEKEISRVLN 423
Cdd:pfam09384 2 YKGEGDDIVVEGPKKKKLKKYDKLLRKFRYSKALDAVLEPG--VKSPEVTVAVLEELRHRGALRAALAGRDEESLEPLLK 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953004335 424 FLIRNLSQPRFAPVLINAAEIIIDIYLPVIGQSPVVDKKFLLLQGLVEKEIDYQRELLETLGMMDML 490
Cdd:pfam09384 80 FLIKHITDPRFTRLLVDVANVVLDIYGSVLGQSPELDKLFRRLRRKVREEIELQKELLELKGMLDML 146
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
39-307 |
8.44e-57 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 194.74 E-value: 8.44e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 39 GAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLRQF 118
Cdd:COG2319 79 AAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 119 EGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCGCASklnPD--LFVTGSYDHTVKMFDART 196
Cdd:COG2319 159 TGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFS---PDgkLLASGSADGTVRLWDLAT 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 197 NQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKV 274
Cdd:COG2319 236 GKLLRTLTgHSGSVRSVAFSPDGRLLASGSAdGTVRLWD-LATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRL 314
|
250 260 270
....*....|....*....|....*....|....
gi 1953004335 275 YSTTSYKVVHSFD-YAASILSLALAHEDETIVVG 307
Cdd:COG2319 315 WDLATGKLLRTLTgHTGAVRSVAFSPDGKTLASG 348
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
72-315 |
1.33e-47 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 166.74 E-value: 1.33e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 72 PIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDI 151
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 152 PNSKEIVTFKEHSDYVRCgCASKLNPDLFVTGSYDHTVKMFDARTNQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYV 229
Cdd:cd00200 81 ETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRgHTDWVNSVAFSPDGTFVASSSQdGTI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 230 KIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDY-AASILSLALAHEDETIVVGM 308
Cdd:cd00200 160 KLWD-LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGhENGVNSVAFSPDGYLLASGS 238
|
....*..
gi 1953004335 309 TNGILSV 315
Cdd:cd00200 239 EDGTIRV 245
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
91-236 |
3.05e-08 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 56.05 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 91 DGKLLVAgSEDGGVQLFDI-------SGRAPLRQFEGHTKAVHTVDFTADKYHVVSGAD-DYTVKLWDIPNSKEIVTFKE 162
Cdd:PTZ00421 88 PQKLFTA-SEDGTIMGWGIpeegltqNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGaDMVVNVWDVERGKAVEVIKC 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 163 HSDYVrCGCASKLNPDLFVTGSYDHTVKMFDARTNQSVISVEHGQPVES--VLLFPSGGLLASAG-----GRYVKIWDML 235
Cdd:PTZ00421 167 HSDQI-TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSqrCLWAKRKDLIITLGcsksqQRQIMLWDTR 245
|
.
gi 1953004335 236 K 236
Cdd:PTZ00421 246 K 246
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
114-150 |
1.22e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 48.08 E-value: 1.22e-07
10 20 30
....*....|....*....|....*....|....*..
gi 1953004335 114 PLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWD 150
Cdd:smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
114-150 |
2.08e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 47.34 E-value: 2.08e-07
10 20 30
....*....|....*....|....*....|....*..
gi 1953004335 114 PLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWD 150
Cdd:pfam00400 3 LLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| UTP15_C |
pfam09384 |
UTP15 C terminal; U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar ... |
344-490 |
3.55e-64 |
|
UTP15 C terminal; U3 snoRNA is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA. It is a component of the ribosomal small subunit (SSU) processome. UTP15 is needed for optimal pre-ribosomal RNA transcription by RNA polymerase I, together with a subset of U3 proteins required for transcription (t-UTPs). This entry represents the C terminal of UTP15, and is found adjacent to WD40 repeats (pfam00400).
Pssm-ID: 462782 Cd Length: 146 Bit Score: 205.41 E-value: 3.55e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 344 YMKQRDDILINRPSKKHLELYDRDLKNFRVSKALDRVLEPSctIKTPEITVSIIKELNRRGVLANALAGRDEKEISRVLN 423
Cdd:pfam09384 2 YKGEGDDIVVEGPKKKKLKKYDKLLRKFRYSKALDAVLEPG--VKSPEVTVAVLEELRHRGALRAALAGRDEESLEPLLK 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1953004335 424 FLIRNLSQPRFAPVLINAAEIIIDIYLPVIGQSPVVDKKFLLLQGLVEKEIDYQRELLETLGMMDML 490
Cdd:pfam09384 80 FLIKHITDPRFTRLLVDVANVVLDIYGSVLGQSPELDKLFRRLRRKVREEIELQKELLELKGMLDML 146
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
39-307 |
8.44e-57 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 194.74 E-value: 8.44e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 39 GAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLRQF 118
Cdd:COG2319 79 AAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 119 EGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCGCASklnPD--LFVTGSYDHTVKMFDART 196
Cdd:COG2319 159 TGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFS---PDgkLLASGSADGTVRLWDLAT 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 197 NQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKV 274
Cdd:COG2319 236 GKLLRTLTgHSGSVRSVAFSPDGRLLASGSAdGTVRLWD-LATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRL 314
|
250 260 270
....*....|....*....|....*....|....
gi 1953004335 275 YSTTSYKVVHSFD-YAASILSLALAHEDETIVVG 307
Cdd:COG2319 315 WDLATGKLLRTLTgHTGAVRSVAFSPDGKTLASG 348
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
39-307 |
2.61e-55 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 190.51 E-value: 2.61e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 39 GAVSKVDFSPQPpyNYAVTASS--RIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLR 116
Cdd:COG2319 121 GAVRSVAFSPDG--KTLASGSAdgTVRLWDLATGKLLRTLTGHSGAVTSVAFSPDGKLLASGSDDGTVRLWDLATGKLLR 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 117 QFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCgCAskLNPD--LFVTGSYDHTVKMFDA 194
Cdd:COG2319 199 TLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLRTLTGHSGSVRS-VA--FSPDgrLLASGSADGTVRLWDL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 195 RTNQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKV 272
Cdd:COG2319 276 ATGELLRTLTgHSGGVNSVAFSPDGKLLASGSDdGTVRLWD-LATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTV 354
|
250 260 270
....*....|....*....|....*....|....*.
gi 1953004335 273 KVYSTTSYKVVHSF-DYAASILSLALAHEDETIVVG 307
Cdd:COG2319 355 RLWDLATGELLRTLtGHTGAVTSVAFSPDGRTLASG 390
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
39-279 |
3.48e-52 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 182.42 E-value: 3.48e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 39 GAVSKVDFSPQPpyNYAVTASS--RIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLR 116
Cdd:COG2319 163 GAVTSVAFSPDG--KLLASGSDdgTVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATGKLLR 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 117 QFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCGCASklnPD--LFVTGSYDHTVKMFDA 194
Cdd:COG2319 241 TLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGHSGGVNSVAFS---PDgkLLASGSDDGTVRLWDL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 195 RTNQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKV 272
Cdd:COG2319 318 ATGKLLRTLTgHTGAVRSVAFSPDGKTLASGSDdGTVRLWD-LATGELLRTLTGHTGAVTSVAFSPDGRTLASGSADGTV 396
|
....*..
gi 1953004335 273 KVYSTTS 279
Cdd:COG2319 397 RLWDLAT 403
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
38-315 |
1.86e-51 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 180.49 E-value: 1.86e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 38 FGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLRQ 117
Cdd:COG2319 36 AAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLATGLLLRT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 118 FEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCgCAskLNPD--LFVTGSYDHTVKMFDAR 195
Cdd:COG2319 116 LTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTS-VA--FSPDgkLLASGSDDGTVRLWDLA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 196 TNQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVK 273
Cdd:COG2319 193 TGKLLRTLTgHTGAVRSVAFSPDGKLLASGSAdGTVRLWD-LATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVR 271
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1953004335 274 VYSTTSYKVVHSFD-YAASILSLALAHEDETIVVGMTNGILSV 315
Cdd:COG2319 272 LWDLATGELLRTLTgHSGGVNSVAFSPDGKLLASGSDDGTVRL 314
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
72-315 |
1.33e-47 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 166.74 E-value: 1.33e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 72 PIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDI 151
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 152 PNSKEIVTFKEHSDYVRCgCASKLNPDLFVTGSYDHTVKMFDARTNQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYV 229
Cdd:cd00200 81 ETGECVRTLTGHTSYVSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRgHTDWVNSVAFSPDGTFVASSSQdGTI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 230 KIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDY-AASILSLALAHEDETIVVGM 308
Cdd:cd00200 160 KLWD-LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGhENGVNSVAFSPDGYLLASGS 238
|
....*..
gi 1953004335 309 TNGILSV 315
Cdd:cd00200 239 EDGTIRV 245
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
39-306 |
1.87e-47 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 166.36 E-value: 1.87e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 39 GAVSKVDFSPQPpyNYAVTASS--RIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLR 116
Cdd:cd00200 10 GGVTCVAFSPDG--KLLATGSGdgTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 117 QFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCGCASKlNPDLFVTGSYDHTVKMFDART 196
Cdd:cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 197 NQSVISVE-HGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKV 274
Cdd:cd00200 167 GKCVATLTgHTGEVNSVAFSPDGEKLLSSSSdGTIKLWD-LSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
|
250 260 270
....*....|....*....|....*....|...
gi 1953004335 275 YSTTSYKVVHSFD-YAASILSLALaHEDETIVV 306
Cdd:cd00200 246 WDLRTGECVQTLSgHTNSVTSLAW-SPDGKRLA 277
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
39-276 |
1.15e-43 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 156.34 E-value: 1.15e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 39 GAVSKVDFSPQppYNYAVTASS----RIHIYGrySQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAP 114
Cdd:cd00200 52 GPVRDVAASAD--GTYLASGSSdktiRLWDLE--TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 115 LRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCGCASKlNPDLFVTGSYDHTVKMFDA 194
Cdd:cd00200 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 195 RTNQSVIS-VEHGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKV 272
Cdd:cd00200 207 STGKCLGTlRGHENGVNSVAFSPDGYLLASGSEdGTIRVWD-LRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTI 285
|
....
gi 1953004335 273 KVYS 276
Cdd:cd00200 286 RIWD 289
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
45-315 |
3.63e-40 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 149.68 E-value: 3.63e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 45 DFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLRQFEGHTKA 124
Cdd:COG2319 1 ALSADGAALAAASADLALALLAAALGALLLLLLGLAAAVASLAASPDGARLAAGAGDLTLLLLDAAAGALLATLLGHTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 125 VHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCGCASklnPD--LFVTGSYDHTVKMFDARTNQSVIS 202
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFS---PDgkTLASGSADGTVRLWDLATGKLLRT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 203 VE-HGQPVESVLLFPSGGLLASAGG-RYVKIWDmLKGGQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKVYSTTSY 280
Cdd:COG2319 158 LTgHSGAVTSVAFSPDGKLLASGSDdGTVRLWD-LATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVRLWDLATG 236
|
250 260 270
....*....|....*....|....*....|....*.
gi 1953004335 281 KVVHSFD-YAASILSLALAHEDETIVVGMTNGILSV 315
Cdd:COG2319 237 KLLRTLTgHSGSVRSVAFSPDGRLLASGSADGTVRL 272
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
26-193 |
2.53e-27 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 111.27 E-value: 2.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 26 WNNyKTPVQIKEF----GAVSKVDFSPQPPYnyaVTASSR---IHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAG 98
Cdd:cd00200 120 WDV-ETGKCLTTLrghtDWVNSVAFSPDGTF---VASSSQdgtIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSS 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 99 SEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIVTFKEHSDYVRCGCASKLNPD 178
Cdd:cd00200 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275
|
170
....*....|....*
gi 1953004335 179 LfVTGSYDHTVKMFD 193
Cdd:cd00200 276 L-ASGSADGTIRIWD 289
|
|
| PTZ00421 |
PTZ00421 |
coronin; Provisional |
91-236 |
3.05e-08 |
|
coronin; Provisional
Pssm-ID: 173611 [Multi-domain] Cd Length: 493 Bit Score: 56.05 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 91 DGKLLVAgSEDGGVQLFDI-------SGRAPLRQFEGHTKAVHTVDFTADKYHVVSGAD-DYTVKLWDIPNSKEIVTFKE 162
Cdd:PTZ00421 88 PQKLFTA-SEDGTIMGWGIpeegltqNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGaDMVVNVWDVERGKAVEVIKC 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 163 HSDYVrCGCASKLNPDLFVTGSYDHTVKMFDARTNQSVISVEHGQPVES--VLLFPSGGLLASAG-----GRYVKIWDML 235
Cdd:PTZ00421 167 HSDQI-TSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSqrCLWAKRKDLIITLGcsksqQRQIMLWDTR 245
|
.
gi 1953004335 236 K 236
Cdd:PTZ00421 246 K 246
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
114-150 |
1.22e-07 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 48.08 E-value: 1.22e-07
10 20 30
....*....|....*....|....*....|....*..
gi 1953004335 114 PLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWD 150
Cdd:smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
114-150 |
2.08e-07 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 47.34 E-value: 2.08e-07
10 20 30
....*....|....*....|....*....|....*..
gi 1953004335 114 PLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWD 150
Cdd:pfam00400 3 LLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| PLN00181 |
PLN00181 |
protein SPA1-RELATED; Provisional |
85-318 |
3.53e-07 |
|
protein SPA1-RELATED; Provisional
Pssm-ID: 177776 [Multi-domain] Cd Length: 793 Bit Score: 53.17 E-value: 3.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 85 CA-TFRQDGKLLVAGSEDGGVQLFDIS-----GRA---PLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSK 155
Cdd:PLN00181 487 CAiGFDRDGEFFATAGVNKKIKIFECEsiikdGRDihyPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ 566
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 156 EIVTFKEHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNQSVISVEHGQPVESVlLFPS--GGLLASAGGRY-VKIW 232
Cdd:PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV-QFPSesGRSLAFGSADHkVYYY 645
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 233 DMLKGGQLLVSLKNHHKTVTCLYLSSSGQrLLSGSLDRKVKVY------STTSYKVVHSFDYAASILS-LALAHEDETIV 305
Cdd:PLN00181 646 DLRNPKLPLCTMIGHSKTVSYVRFVDSST-LVSSSTDNTLKLWdlsmsiSGINETPLHSFMGHTNVKNfVGLSVSDGYIA 724
|
250
....*....|...
gi 1953004335 306 VGMTNGILSVKHR 318
Cdd:PLN00181 725 TGSETNEVFVYHK 737
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
238-276 |
2.13e-06 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 44.23 E-value: 2.13e-06
10 20 30
....*....|....*....|....*....|....*....
gi 1953004335 238 GQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKVYS 276
Cdd:smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
238-276 |
2.19e-06 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 44.26 E-value: 2.19e-06
10 20 30
....*....|....*....|....*....|....*....
gi 1953004335 238 GQLLVSLKNHHKTVTCLYLSSSGQRLLSGSLDRKVKVYS 276
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
153-193 |
1.17e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 39.60 E-value: 1.17e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1953004335 153 NSKEIVTFKEHSDYVRCGCASKlNPDLFVTGSYDHTVKMFD 193
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
179-306 |
1.63e-04 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 43.14 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 179 LFVTGSYDHTVKMFDARTNQSVISVEHGQPVESVLLFPSGGLL--ASAGGRYVKIWDmLKGGQLLVSLKNHHKTVTCLYl 256
Cdd:COG3391 82 LYVANSGSGRVSVIDLATGKVVATIPVGGGPRGLAVDPDGGRLyvADSGNGRVSVID-TATGKVVATIPVGAGPHGIAV- 159
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1953004335 257 SSSGQRLLSGSLDRK-----VKVYSTTSYKVVHSFDYAASILSLALAHEDETIVV 306
Cdd:COG3391 160 DPDGKRLYVANSGSNtvsviVSVIDTATGKVVATIPVGGGPVGVAVSPDGRRLYV 214
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
154-193 |
1.65e-04 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 38.87 E-value: 1.65e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1953004335 154 SKEIVTFKEHSDYVRCgCASKLNPDLFVTGSYDHTVKMFD 193
Cdd:pfam00400 1 GKLLKTLEGHTGSVTS-LAFSPDGKLLASGSDDGTVKVWD 39
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
69-108 |
4.51e-04 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 37.68 E-value: 4.51e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1953004335 69 SQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFD 108
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
55-197 |
6.24e-04 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 41.60 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 55 AVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFDISGRAPLRQFEGHtKAVHTVDFTAD- 133
Cdd:COG3391 85 ANSGSGRVSVIDLATGKVVATIPVGGGPRGLAVDPDGGRLYVADSGNGRVSVIDTATGKVVATIPVG-AGPHGIAVDPDg 163
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1953004335 134 KYHVVSGADDYT----VKLWDIPNSKEIVTFKEHSDyvrcGCASKLNPD---LFVTGSY-------DHTVKMFDARTN 197
Cdd:COG3391 164 KRLYVANSGSNTvsviVSVIDTATGKVVATIPVGGG----PVGVAVSPDgrrLYVANRGsntsnggSNTVSVIDLATL 237
|
|
| YncE |
COG3391 |
DNA-binding beta-propeller fold protein YncE [General function prediction only]; |
38-221 |
8.04e-04 |
|
DNA-binding beta-propeller fold protein YncE [General function prediction only];
Pssm-ID: 442618 [Multi-domain] Cd Length: 237 Bit Score: 41.22 E-value: 8.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 38 FGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGKLL-VAGSEDGGVQLFDISGRAPLR 116
Cdd:COG3391 25 VAALGLGGGGPLLAAASGGVVGAAVGGGGVALLAGLGLGAAAVADADGADAGADGRRLyVANSGSGRVSVIDLATGKVVA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 117 QFEGHTKAvHTVDFTADKYHV-VSGADDYTVKLWDIPNSKEIVTFKEHSDYVrcGCAskLNPD---LFVTGSYDHT---- 188
Cdd:COG3391 105 TIPVGGGP-RGLAVDPDGGRLyVADSGNGRVSVIDTATGKVVATIPVGAGPH--GIA--VDPDgkrLYVANSGSNTvsvi 179
|
170 180 190
....*....|....*....|....*....|...
gi 1953004335 189 VKMFDARTNQSVISVEHGQPVESVLLFPSGGLL 221
Cdd:COG3391 180 VSVIDTATGKVVATIPVGGGPVGVAVSPDGRRL 212
|
|
| PTZ00420 |
PTZ00420 |
coronin; Provisional |
102-344 |
1.27e-03 |
|
coronin; Provisional
Pssm-ID: 240412 [Multi-domain] Cd Length: 568 Bit Score: 41.47 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 102 GGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVV-SGADDYTVKLWDIPNSKEIVT--------FKEHSDYVRCGCA 172
Cdd:PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILaSGSEDLTIRVWEIPHNDESVKeikdpqciLKGHKKKISIIDW 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 173 SKLNPDLFVTGSYDHTVKMFDARTNQSVISVEHGQPVESVLLFPSGGLLA-SAGGRYVKIWDMLKgGQLLVSLKNHH--K 249
Cdd:PTZ00420 134 NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSgTCVGKHMHIIDPRK-QEIASSFHIHDggK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 250 TVTCLYLSSSG---QRLLSGSLD----RKVKVYS---TTSYKVVHSFDYAASILslaLAHEDETI----VVGMTNG---- 311
Cdd:PTZ00420 213 NTKNIWIDGLGgddNYILSTGFSknnmREMKLWDlknTTSALVTMSIDNASAPL---IPHYDESTgliyLIGKGDGncry 289
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1953004335 312 -------ILSVKHRKSEAKKDSF---PKRRRPAYRTFIkGKSY 344
Cdd:PTZ00420 290 yqhslgsIRKVNEYKSCSPFRSFgflPKQICDVYKCEI-GRVY 331
|
|
| NBCH_WD40 |
pfam20426 |
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at ... |
94-320 |
2.42e-03 |
|
Neurobeachin beta propeller domain; This entry represents the beta propeller domain found at the C-terminus of neurobeachin-like proteins.
Pssm-ID: 466575 [Multi-domain] Cd Length: 350 Bit Score: 40.06 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 94 LLVAGSEDGGVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDI----PNSKEIVTFKE------- 162
Cdd:pfam20426 96 LISCGNWENSFQVISLNDGRMVQSIRQHKDVVSCVAVTSDGSILATGSYDTTVMVWEVlrgrSSEKRSRNTQTefprkdh 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 163 ------------HSDYVRCGCASkLNPDLFVTGSYDHTVKMFDARTNQSVISVEHgqpvesvllfPSG----GLLASAGG 226
Cdd:pfam20426 176 viaetpfhilcgHDDIITCLYVS-VELDIVISGSKDGTCIFHTLREGRYVRSIRH----------PSGcplsKLVASRHG 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1953004335 227 RYVKIWDM--------LKGGQLLVSLKNHHktVTCLYLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAA-SILSLAL 297
Cdd:pfam20426 245 RIVLYADDdlslhlysINGKHIASSESNGR--LNCIELSSCGEFLVCAGDQGQIVVRSMNSLEVVRRYNGIGkIITSLTV 322
|
250 260
....*....|....*....|....*....
gi 1953004335 298 AHEdETIVVGMTNGILSV------KHRKS 320
Cdd:pfam20426 323 TPE-ECFLAGTKDGSLLVysienpQLRKA 350
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
71-108 |
4.77e-03 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 35.01 E-value: 4.77e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1953004335 71 EPIKTFSRFKDTAYCATFRQDGKLLVAGSEDGGVQLFD 108
Cdd:pfam00400 2 KLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVWD 39
|
|
|