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Conserved domains on  [gi|1333562134|ref|XP_023508449|]
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tubulin polyglutamylase TTLL6 isoform X1 [Equus caballus]

Protein Classification

tubulin--tyrosine ligase family protein( domain architecture ID 10504173)

tubulin--tyrosine ligase (TTL) family protein such as TTL that catalyzes the post-translational retyrosination of detyrosinated a-tubulin, and TTL-like (TTLL) enzymes that catalyze the glycylation and/or glutamylation, the post-translational addition of glycines and glutamates to genetically encoded glutamates in the intrinsically disordered tubulin C-terminal tails

Gene Ontology:  GO:0005524
PubMed:  23358242|9538689

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TTL pfam03133
Tubulin-tyrosine ligase family; Tubulins and microtubules are subjected to several ...
4-279 6.16e-99

Tubulin-tyrosine ligase family; Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain.


:

Pssm-ID: 397308  Cd Length: 291  Bit Score: 306.96  E-value: 6.16e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134   4 YQKINHFPGMSEICRKDLLARNMSRMLKMFPKDFHFFPRTWCLPADWGDLQNYSRSRKNRTYICKPDSGCQGRGIFITRT 83
Cdd:pfam03133   8 HQALNHFPGSYEITRKDLLWKNIKRTPCDRGLKGDFLPRTFILPTDLAEFVDYFEDRERNTWIVKPSASARGRGIRVTNK 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134  84 VKEIK---PGEDMICQLYISKPFIIDGFKFDLRIYVLMTSCDPLRIFAYNEGLARFATTSYSlPCTDNLDDVCMHLTNYS 160
Cdd:pfam03133  88 LSQIPkwsQSRPLVVQKYIERPLLIDGRKFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYS-PSSSDLDDVEMHLTNYS 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134 161 INKHSSNFIRDAHSGSKRKLSTFNLYMESHGYNVQQIWRDIEDVIIKTIISAhpiikhNYQTCFPNHTLNSACFEILGFD 240
Cdd:pfam03133 167 IQKKSSSLNEDYNEPHGHKWSLQNFWKYLEEKDKDEIWLEIESIIIKTILAA------EVEASRLNVQPLPNCFELYGFD 240
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1333562134 241 ILLDHKLKPWLLEVNHSPSFSTDSCLDREVKDSLLYDTL 279
Cdd:pfam03133 241 FMIDENLKPWLLEVNSSPSLHSTTKLDARLKEQLIDDVL 279
 
Name Accession Description Interval E-value
TTL pfam03133
Tubulin-tyrosine ligase family; Tubulins and microtubules are subjected to several ...
4-279 6.16e-99

Tubulin-tyrosine ligase family; Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain.


Pssm-ID: 397308  Cd Length: 291  Bit Score: 306.96  E-value: 6.16e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134   4 YQKINHFPGMSEICRKDLLARNMSRMLKMFPKDFHFFPRTWCLPADWGDLQNYSRSRKNRTYICKPDSGCQGRGIFITRT 83
Cdd:pfam03133   8 HQALNHFPGSYEITRKDLLWKNIKRTPCDRGLKGDFLPRTFILPTDLAEFVDYFEDRERNTWIVKPSASARGRGIRVTNK 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134  84 VKEIK---PGEDMICQLYISKPFIIDGFKFDLRIYVLMTSCDPLRIFAYNEGLARFATTSYSlPCTDNLDDVCMHLTNYS 160
Cdd:pfam03133  88 LSQIPkwsQSRPLVVQKYIERPLLIDGRKFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYS-PSSSDLDDVEMHLTNYS 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134 161 INKHSSNFIRDAHSGSKRKLSTFNLYMESHGYNVQQIWRDIEDVIIKTIISAhpiikhNYQTCFPNHTLNSACFEILGFD 240
Cdd:pfam03133 167 IQKKSSSLNEDYNEPHGHKWSLQNFWKYLEEKDKDEIWLEIESIIIKTILAA------EVEASRLNVQPLPNCFELYGFD 240
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1333562134 241 ILLDHKLKPWLLEVNHSPSFSTDSCLDREVKDSLLYDTL 279
Cdd:pfam03133 241 FMIDENLKPWLLEVNSSPSLHSTTKLDARLKEQLIDDVL 279
YheC COG5891
Spore coat protein YheC/YheD, ATP-grasp superfamily [Cell cycle control, cell division, ...
28-269 8.25e-05

Spore coat protein YheC/YheD, ATP-grasp superfamily [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444593 [Multi-domain]  Cd Length: 400  Bit Score: 45.75  E-value: 8.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134  28 RMLKMFPKDFHFFPRTWCLPaDWGDLQNYSRSRKnRTYIcKPDSGCQGRGIF-ITRTvkeikpGEDMICQLYI------- 99
Cdd:COG5891   154 QLLSKDPRLRPYLPETELLT-SPEDLLEFLKRYK-SVYL-KPVNGSLGRGIIrIEKK------GDGYLLRYRRkkrnvrr 224
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134 100 -----------------SKPFII---------DGFKFDLRIYV--------LMTSCdplrifaynegLARFAttsyslpc 145
Cdd:COG5891   225 rfssldellaflrrllrRKRYIIqqgiplatiDGRPFDFRVLVqkngrgewVVTGI-----------VARIA-------- 285
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134 146 tdnlddvcmhltnysiNKHS--SNFirdAHSGSKRKLSTFnLYMESHGYNVQQIWRDIEDVIIKTiisAHPIIKHnyqtc 223
Cdd:COG5891   286 ----------------GPGSitTNL---SGGGTALPLEEL-LRRAFGDSKAEEILQKLERIALEI---ARALEES----- 337
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1333562134 224 FPNhtlnsaCFEiLGFDILLDHKLKPWLLEVNHSPSFSTDSCLDRE 269
Cdd:COG5891   338 YGG------LGE-LGIDLGIDRDGKIWLLEVNSKPGRSIFDEPGDK 376
 
Name Accession Description Interval E-value
TTL pfam03133
Tubulin-tyrosine ligase family; Tubulins and microtubules are subjected to several ...
4-279 6.16e-99

Tubulin-tyrosine ligase family; Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL). The true physiological function of TTL has so far not been established. Tubulin-tyrosine ligase (TTL) catalyzes the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness. On the other hand, 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis. Bacterial homologs of TTL are predicted to form peptide tags. Some of these are fused to a 2-oxoglutarate Fe(II)-dependent dioxygenase domain.


Pssm-ID: 397308  Cd Length: 291  Bit Score: 306.96  E-value: 6.16e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134   4 YQKINHFPGMSEICRKDLLARNMSRMLKMFPKDFHFFPRTWCLPADWGDLQNYSRSRKNRTYICKPDSGCQGRGIFITRT 83
Cdd:pfam03133   8 HQALNHFPGSYEITRKDLLWKNIKRTPCDRGLKGDFLPRTFILPTDLAEFVDYFEDRERNTWIVKPSASARGRGIRVTNK 87
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134  84 VKEIK---PGEDMICQLYISKPFIIDGFKFDLRIYVLMTSCDPLRIFAYNEGLARFATTSYSlPCTDNLDDVCMHLTNYS 160
Cdd:pfam03133  88 LSQIPkwsQSRPLVVQKYIERPLLIDGRKFDIRLYVLVTSVNPLRVYVYREGLLRFASVKYS-PSSSDLDDVEMHLTNYS 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134 161 INKHSSNFIRDAHSGSKRKLSTFNLYMESHGYNVQQIWRDIEDVIIKTIISAhpiikhNYQTCFPNHTLNSACFEILGFD 240
Cdd:pfam03133 167 IQKKSSSLNEDYNEPHGHKWSLQNFWKYLEEKDKDEIWLEIESIIIKTILAA------EVEASRLNVQPLPNCFELYGFD 240
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1333562134 241 ILLDHKLKPWLLEVNHSPSFSTDSCLDREVKDSLLYDTL 279
Cdd:pfam03133 241 FMIDENLKPWLLEVNSSPSLHSTTKLDARLKEQLIDDVL 279
YheC COG5891
Spore coat protein YheC/YheD, ATP-grasp superfamily [Cell cycle control, cell division, ...
28-269 8.25e-05

Spore coat protein YheC/YheD, ATP-grasp superfamily [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444593 [Multi-domain]  Cd Length: 400  Bit Score: 45.75  E-value: 8.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134  28 RMLKMFPKDFHFFPRTWCLPaDWGDLQNYSRSRKnRTYIcKPDSGCQGRGIF-ITRTvkeikpGEDMICQLYI------- 99
Cdd:COG5891   154 QLLSKDPRLRPYLPETELLT-SPEDLLEFLKRYK-SVYL-KPVNGSLGRGIIrIEKK------GDGYLLRYRRkkrnvrr 224
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134 100 -----------------SKPFII---------DGFKFDLRIYV--------LMTSCdplrifaynegLARFAttsyslpc 145
Cdd:COG5891   225 rfssldellaflrrllrRKRYIIqqgiplatiDGRPFDFRVLVqkngrgewVVTGI-----------VARIA-------- 285
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1333562134 146 tdnlddvcmhltnysiNKHS--SNFirdAHSGSKRKLSTFnLYMESHGYNVQQIWRDIEDVIIKTiisAHPIIKHnyqtc 223
Cdd:COG5891   286 ----------------GPGSitTNL---SGGGTALPLEEL-LRRAFGDSKAEEILQKLERIALEI---ARALEES----- 337
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 1333562134 224 FPNhtlnsaCFEiLGFDILLDHKLKPWLLEVNHSPSFSTDSCLDRE 269
Cdd:COG5891   338 YGG------LGE-LGIDLGIDRDGKIWLLEVNSKPGRSIFDEPGDK 376
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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