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Conserved domains on  [gi|1143400299|ref|XP_019954541|]
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PREDICTED: serine/arginine repetitive matrix protein 4 isoform X1 [Paralichthys olivaceus]

Protein Classification

SRRM_C domain-containing protein( domain architecture ID 10633612)

SRRM_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SRRM_C pfam15230
Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the ...
 474-540 1.21e-13

Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the C-terminus of Serine/arginine repetitive matrix proteins 3 and 4.


:

Pssm-ID: 464573  Cd Length: 67  Bit Score: 65.98  E-value: 1.21e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1143400299 474 YSRRLRDRKKAPSYRETDVKTARKVNGKRRRRKSYSPMKKRRRDSPSHLEARRITSARKRPIPYFRP 540
Cdd:pfam15230   1 RSRSSSSRERDSKSKSSSSGSSPARERARRRSRSYSPIRKRRRDSPSHLEARRITSARKRPIPYYRP 67
 
Name Accession Description Interval E-value
SRRM_C pfam15230
Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the ...
 474-540 1.21e-13

Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the C-terminus of Serine/arginine repetitive matrix proteins 3 and 4.


Pssm-ID: 464573  Cd Length: 67  Bit Score: 65.98  E-value: 1.21e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1143400299 474 YSRRLRDRKKAPSYRETDVKTARKVNGKRRRRKSYSPMKKRRRDSPSHLEARRITSARKRPIPYFRP 540
Cdd:pfam15230   1 RSRSSSSRERDSKSKSSSSGSSPARERARRRSRSYSPIRKRRRDSPSHLEARRITSARKRPIPYYRP 67
 
Name Accession Description Interval E-value
SRRM_C pfam15230
Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the ...
 474-540 1.21e-13

Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the C-terminus of Serine/arginine repetitive matrix proteins 3 and 4.


Pssm-ID: 464573  Cd Length: 67  Bit Score: 65.98  E-value: 1.21e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1143400299 474 YSRRLRDRKKAPSYRETDVKTARKVNGKRRRRKSYSPMKKRRRDSPSHLEARRITSARKRPIPYFRP 540
Cdd:pfam15230   1 RSRSSSSRERDSKSKSSSSGSSPARERARRRSRSYSPIRKRRRDSPSHLEARRITSARKRPIPYYRP 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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