|
Name |
Accession |
Description |
Interval |
E-value |
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
329-892 |
1.75e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.77 E-value: 1.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 329 TERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDErmeqmsnmtlMKETITTVEKEMKSLARKAMDTESELGRQ 408
Cdd:pfam15921 292 SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSE----------LREAKRMYEDKIEELEKQLVLANSELTEA 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 409 KAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEK-------IDNFTRQNIAQREEISILGAAINDLAKE 481
Cdd:pfam15921 362 RTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 482 KE---------------------CLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISR 540
Cdd:pfam15921 442 CQgqmerqmaaiqgkneslekvsSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITK 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 541 MRRQLDETNDELAQIARERDILAHdndnlqeqfgkVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEES 620
Cdd:pfam15921 522 LRSRVDLKLQELQHLKNEGDHLRN-----------VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQV 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 621 ENRQIMDQLRKANEDAENW-------ENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQIS 693
Cdd:pfam15921 591 EKAQLEKEINDRRLELQEFkilkdkkDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELN 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 694 TLHKSLV-----------KMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEI 762
Cdd:pfam15921 671 SLSEDYEvlkrnfrnkseEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKI 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 763 ELLRSQMTNerismqnleallvANRDKEYqsqiaLQEKESEIQLLKEHLCLAENKMA----IQSRDVAQFRNVVTQLEAD 838
Cdd:pfam15921 751 QFLEEAMTN-------------ANKEKHF-----LKEEKNKLSQELSTVATEKNKMAgeleVLRSQERRLKEKVANMEVA 812
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 918627528 839 LDITKRQLG-----TERFERERA---------VQELRRQNYSSNAyhlnSMKPN-TKCHSPERVHRRSP 892
Cdd:pfam15921 813 LDKASLQFAecqdiIQRQEQESVrlklqhtldVKELQGPGYTSNS----SMKPRlLQPASFTRTHSNVP 877
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
347-679 |
2.13e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.71 E-value: 2.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 347 NEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDL 426
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 427 SDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMK 506
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 507 EKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKK 586
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 587 LNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQL-RKANEDAENWENKARQTEADNNTLKLELITAEAEGN 665
Cdd:TIGR02168 917 LEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALeNKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYE 996
|
330
....*....|....
gi 918627528 666 RLKEKVDALNREVE 679
Cdd:TIGR02168 997 ELKERYDFLTAQKE 1010
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-780 |
2.71e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 2.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 467 EISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLD 546
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 547 ETNDELAQiarerdiLAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILksEESENRqim 626
Cdd:TIGR02168 306 ILRERLAN-------LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL--EELESR--- 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 627 dqLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHlnaersyksqistlhkslvkmEEEL 706
Cdd:TIGR02168 374 --LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL---------------------LKKL 430
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 918627528 707 QKVQFEKVSalADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLE 780
Cdd:TIGR02168 431 EEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
130-864 |
3.62e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 3.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 130 EQLEEEKnfvvDTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSPSRLDSFVKTLEAdrdyYKSEAQH 209
Cdd:TIGR02168 235 EELREEL----EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR----LEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 210 LRKMLRNRSKSprrpspssrgancdvelLKSTTRDREELKCMLEKYERHLAEIQGNVKVLTSErdktfllYEQAQEEIAR 289
Cdd:TIGR02168 307 LRERLANLERQ-----------------LEELEAQLEELESKLDELAEELAELEEKLEELKEE-------LESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 290 LRREMmknckspksttahAILRRVETERDVAFTDLRRmttERDSLRERLKIAQetafNEKAHLEQRIEELECTVHNLDDE 369
Cdd:TIGR02168 363 LEAEL-------------EELESRLEELEEQLETLRS---KVAQLELQIASLN----NEIERLEARLERLEDRRERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 370 RMEQMSNMTL--MKETITTVEKEMKSLArkamDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEki 447
Cdd:TIGR02168 423 IEELLKKLEEaeLKELQAELEELEEELE----ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-- 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 448 mcLDEKIDNFTR---QNIAQREEISILGAAINDLAKEKECLQACLDK-----------KSENIA----------SLGESL 503
Cdd:TIGR02168 497 --LQENLEGFSEgvkALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavvvENLNAAkkaiaflkqnELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 504 AMKEKTISGMKNIIAEMEQASRQSTEA-----LIMCEQDIS----------RMRRQLDETNDELAQIARERDILAHDNDN 568
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEGFLgvakdLVKFDPKLRkalsyllggvLVVDDLDNALELAKKLRPGYRIVTLDGDL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 569 LQEQ----FGKVKQENQALSKKlndthNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAEnwenkar 644
Cdd:TIGR02168 655 VRPGgvitGGSAKTNSSILERR-----REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE------- 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 645 QTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTR 724
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 725 ELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEI 804
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNER 882
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 805 QLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQN 864
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
286-614 |
1.06e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 286 EIARLRREMmknckspksTTAHAILRRVETERDVAFTDLRRMTTERDSLR---ERLKIAQETAFNEKAHLEQRIEELECT 362
Cdd:TIGR02168 678 EIEELEEKI---------EELEEKIAELEKALAELRKELEELEEELEQLRkelEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 363 VHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQL 442
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 443 TQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEKtisgmkniiaEMEQ 522
Cdd:TIGR02168 829 LERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRS----------ELEE 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 523 ASRQSTEAlimcEQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQF-GKVKQENQALSKKLNDTHNELNDIKQKV 601
Cdd:TIGR02168 899 LSEELREL----ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRL 974
|
330
....*....|...
gi 918627528 602 QDTNLEVNKLKNI 614
Cdd:TIGR02168 975 KRLENKIKELGPV 987
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-811 |
1.98e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 1.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 53 AEKNQDTRQLEQEVKNQDKFISTLKLQIEDLKQTNHGLEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELIKIDQLAEQL 132
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 133 EEEknfvVDTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSPSRLDsfvkTLEADRDYYKSEAQHLRK 212
Cdd:TIGR02168 322 EAQ----LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLE----ELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 213 MLRNRSKSPRRPSPSSRGANCDVELLKSTTRDREElkcmlEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRR 292
Cdd:TIGR02168 394 QIASLNNEIERLEARLERLEDRRERLQQEIEELLK-----KLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 293 EmmknckspksttahaiLRRVETERDVAFTDLRRMTTERDSLRErlkiaqetafnekahLEQRIEELECTVHNLDDERME 372
Cdd:TIGR02168 469 E----------------LEEAEQALDAAERELAQLQARLDSLER---------------LQENLEGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 373 QMSNMTLMKETITTVEKemkslARKAMDTESELGRQKaennslrLLYENTEKDLSDTQrHLAKKKYELQLTQEKIMCLDE 452
Cdd:TIGR02168 518 LSGILGVLSELISVDEG-----YEAAIEAALGGRLQA-------VVVENLNAAKKAIA-FLKQNELGRVTFLPLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 453 KIDNFTRQNIAQREeiSILGAAiNDLAKEKECLQACLDKKSENIA---SLGESLAMKEKTISGMKNIIAEMEQASRQ--- 526
Cdd:TIGR02168 585 EIQGNDREILKNIE--GFLGVA-KDLVKFDPKLRKALSYLLGGVLvvdDLDNALELAKKLRPGYRIVTLDGDLVRPGgvi 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 527 -----STEALIMC-EQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQK 600
Cdd:TIGR02168 662 tggsaKTNSSILErRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 601 VQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQ 680
Cdd:TIGR02168 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 681 HLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKldsskelLNRQLVAKDQEIEMMENELDSARS 760
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-------LESELEALLNERASLEEALALLRS 894
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 918627528 761 EIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHL 811
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
52-805 |
6.46e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 6.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 52 EAEKNQDTRQLEQEVKNQDKFISTLKLqiedlkqtnhglEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELIKIDQLAEQ 131
Cdd:TIGR02168 208 QAEKAERYKELKAELRELELALLVLRL------------EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 132 LEEeknfvvdtADKELEEAKIELIYQQNNITVLEDTIKRLKsiilETEKAQNKSPSRLDSFVKTLEADRDYYKSEAQHLR 211
Cdd:TIGR02168 276 VSE--------LEEEIEELQKELYALANEISRLEQQKQILR----ERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 212 KMLRNRSKSPRRPSPSSRGANCDVELLKSTTRDREELkcmLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLR 291
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQ---LETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 292 REMMKNCKSPKSTTAHAILRRVETERDVAFT---DLRRMTTERDSLRERLKIAQE---TAFNEKAHLEQRIEELECTVHN 365
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEEELEElqeELERLEEALEELREELEEAEQaldAAERELAQLQARLDSLERLQEN 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 366 LDDERmEQMSNMTLMKETITTVEKEMKSLARkaMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQE 445
Cdd:TIGR02168 501 LEGFS-EGVKALLKNQSGLSGILGVLSELIS--VDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 446 KIMCLDEKIDNFTRQNIAQREeiSILGAAiNDLAKEKECLQACLDKKSENIA---SLGESLAMKEKTISGMKNIIAEMEQ 522
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIE--GFLGVA-KDLVKFDPKLRKALSYLLGGVLvvdDLDNALELAKKLRPGYRIVTLDGDL 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 523 ASRQ--------STEALIMC-EQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHNE 593
Cdd:TIGR02168 655 VRPGgvitggsaKTNSSILErRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 594 LNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDA 673
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 674 LNREVEQHLNAERSYKSQISTLHKSLV----------------------------KMEEELQKVQFEKVSALADLSSTRE 725
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAATERRLEdleeqieelsedieslaaeieeleelieELESELEALLNERASLEEALALLRS 894
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 726 LCIKLDSS-KEL------LNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNE-RISMQNLEALLVANRDKEYQSQIAL 797
Cdd:TIGR02168 895 ELEELSEElRELeskrseLRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRL 974
|
....*...
gi 918627528 798 QEKESEIQ 805
Cdd:TIGR02168 975 KRLENKIK 982
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
89-854 |
1.29e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 89 GLEEYVRKLLDSKE---VVSSQVDDLTShnehlcKELIKIDQLaEQLEEEKNFVVDTADKELEEAKIELIYQQNNITVLE 165
Cdd:TIGR02169 164 GVAEFDRKKEKALEeleEVEENIERLDL------IIDEKRQQL-ERLRREREKAERYQALLKEKREYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 166 DTIKRLKSIILETEKAQNKSPSRLDSFVKTLEADRDYYKSEAQHLRKMLRNRSKSPRRPspssrgancdvelLKSTTRDR 245
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK-------------IGELEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 246 EELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIA--RLRREMMKNCKSPKSTTAHAILRRVEtERDVAFTD 323
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEeeRKRRDKLTEEYAELKEELEDLRAELE-EVDKEFAE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 324 LRRmttERDSLRERLkiaqETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTES 403
Cdd:TIGR02169 383 TRD---ELKDYREKL----EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 404 ELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKE 483
Cdd:TIGR02169 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 484 CLQACLD----KKSENIASLGESLA------MKEKTISGMK----NIIAEMEQASRQSTEA--------LIMCE------ 535
Cdd:TIGR02169 536 RYATAIEvaagNRLNNVVVEDDAVAkeaielLKRRKAGRATflplNKMRDERRDLSILSEDgvigfavdLVEFDpkyepa 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 536 -----------QDISRMRRQLD------------ETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHN 592
Cdd:TIGR02169 616 fkyvfgdtlvvEDIEAARRLMGkyrmvtlegelfEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQS 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 593 ELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVD 672
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 673 ALNREVEqhlNAERSY-KSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMM 751
Cdd:TIGR02169 776 KLEEALN---DLEARLsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 752 ENELDSARSEIELLRSQMTNERISMQNLEALL------VANRDKEY-QSQIALQEKESEIQLLKEHLCLAENKMAIQSRD 824
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESRLgdlkkeRDELEAQLrELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
810 820 830
....*....|....*....|....*....|....
gi 918627528 825 VAQFRNVVTQL----EADLDITKRQLGTERFERE 854
Cdd:TIGR02169 933 LSEIEDPKGEDeeipEEELSLEDVQAELQRVEEE 966
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
618-863 |
1.51e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 618 EESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHK 697
Cdd:COG1196 223 KELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 698 SLVKMEEELQkvqfekvSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQ 777
Cdd:COG1196 303 DIARLEERRR-------ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 778 NLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAV 857
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
....*.
gi 918627528 858 QELRRQ 863
Cdd:COG1196 456 EEEEAL 461
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
322-863 |
1.55e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.06 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 322 TDLRRMTTERDSL---RERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLArka 398
Cdd:pfam15921 117 TKLQEMQMERDAMadiRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSIL--- 193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 399 MDTESELGRQKAENNSLRLL-YENTEKDLSDTQRHLAKK---------KYELQL------TQEKIMCLDEKIDNFTRQNI 462
Cdd:pfam15921 194 VDFEEASGKKIYEHDSMSTMhFRSLGSAISKILRELDTEisylkgrifPVEDQLealkseSQNKIELLLQQHQDRIEQLI 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 463 AQRE-EISILGAAINDLAKEKECLQACLDKKSENIASLGeslAMKEKTISGMKNIIAEMEQASRqstEALIMCEQDISRM 541
Cdd:pfam15921 274 SEHEvEITGLTEKASSARSQANSIQSQLEIIQEQARNQN---SMYMRQLSDLESTVSQLRSELR---EAKRMYEDKIEEL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 542 RRQLDETNDELAQIARERDILAHDNDNLQEQFGKV------KQENQALSKKLN------DTHNEL--NDIKQKVQDTNLE 607
Cdd:pfam15921 348 EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlhkREKELSLEKEQNkrlwdrDTGNSItiDHLRRELDDRNME 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 608 VNKLKNILKSEESENRQIMDQLRKAnedaenwenkarqTEADNNTLklelitaeaegnrlkEKVDALNREVEQhlnaers 687
Cdd:pfam15921 428 VQRLEALLKAMKSECQGQMERQMAA-------------IQGKNESL---------------EKVSSLTAQLES------- 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 688 yksqistlhkslvkMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRS 767
Cdd:pfam15921 473 --------------TKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 768 QMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEH----------------------LCLAENKMAIQSRDv 825
Cdd:pfam15921 539 EGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHgrtagamqvekaqlekeindrrLELQEFKILKDKKD- 617
|
570 580 590
....*....|....*....|....*....|....*...
gi 918627528 826 AQFRNVVTQLeADLDITKRQLGTERFERERAVQELRRQ 863
Cdd:pfam15921 618 AKIRELEARV-SDLELEKVKLVNAGSERLRAVKDIKQE 654
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
542-861 |
3.51e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 3.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 542 RRQLDETNDELAQIArerDILAHDN---DNLQEQfGKVKQENQALSKKLNDTHNELndIKQKVQDTNLEVNKLKNILKSE 618
Cdd:TIGR02168 178 ERKLERTRENLDRLE---DILNELErqlKSLERQ-AEKAERYKELKAELRELELAL--LVLRLEELREELEELQEELKEA 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 619 ESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKS 698
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 699 LVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQN 778
Cdd:TIGR02168 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 779 LEallvANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRdVAQFRNVVTQLEAdLDITKRQLGTERFERERAVQ 858
Cdd:TIGR02168 412 LE----DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL-QEELERLEEALEE-LREELEEAEQALDAAERELA 485
|
...
gi 918627528 859 ELR 861
Cdd:TIGR02168 486 QLQ 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
278-862 |
1.42e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 1.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 278 LLYEQAQEEIARLRREMMKNckspksTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIE 357
Cdd:TIGR02168 232 LRLEELREELEELQEELKEA------EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 358 ELectvhnldDERMEQmsnmtlmketittVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKK 437
Cdd:TIGR02168 306 IL--------RERLAN-------------LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 438 YELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEK-----TISG 512
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELkelqaELEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 513 MKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSkKLNDTHN 592
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQS-GLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 593 ELNDI------------------KQKVQDTNLE-VNKLKNILKSEESENRQIM-------DQLRKANEDAENWENKARQT 646
Cdd:TIGR02168 524 VLSELisvdegyeaaieaalggrLQAVVVENLNaAKKAIAFLKQNELGRVTFLpldsikgTEIQGNDREILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 647 EADNNTLKLEL-------------ITAEAEGNRLKEKVDALNREV--EQHL--------NAERSYKSQISTLHKSLVKME 703
Cdd:TIGR02168 604 AKDLVKFDPKLrkalsyllggvlvVDDLDNALELAKKLRPGYRIVtlDGDLvrpggvitGGSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 704 EELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALL 783
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 918627528 784 VANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRR 862
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED 842
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
302-853 |
1.10e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 302 KSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETaFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMK 381
Cdd:PRK02224 200 EEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV-LEEHEERREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 382 ETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQN 461
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 462 IAQREEISILGA--------------AINDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEqASRQS 527
Cdd:PRK02224 359 EELREEAAELESeleeareavedrreEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE-ATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 528 TEALI-------------MCEQDI--SRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQenqalskkLNDTHN 592
Cdd:PRK02224 438 ARERVeeaealleagkcpECGQPVegSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAED--------LVEAED 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 593 ELNDIKQKVQDtnleVNKLKNILKSEESENRQIMDQLRkanEDAENWENKARQTEADNNtlkleliTAEAEGNRLKEKVD 672
Cdd:PRK02224 510 RIERLEERRED----LEELIAERRETIEEKRERAEELR---ERAAELEAEAEEKREAAA-------EAEEEAEEAREEVA 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 673 ALNREVEQhLNAERSYKSQISTLHKSLVKMEEELQKVQfEKVSALADLSstrelciklDSSKEllnrQLVAKDQEIEMME 752
Cdd:PRK02224 576 ELNSKLAE-LKERIESLERIRTLLAAIADAEDEIERLR-EKREALAELN---------DERRE----RLAEKRERKRELE 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 753 NELDSARseIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQ----LLKEHLCLAENKMAIQS--RDVA 826
Cdd:PRK02224 641 AEFDEAR--IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEeleeLRERREALENRVEALEAlyDEAE 718
|
570 580
....*....|....*....|....*..
gi 918627528 827 QFRNVVTQLEADLditkRQLGTERFER 853
Cdd:PRK02224 719 ELESMYGDLRAEL----RQRNVETLER 741
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
259-846 |
1.76e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 259 LAEIQGNVKVLTSERDKTfLLYEQAQEEIARLRREMM----KNCKSpKSTTAHAILRRVETERDVAFTDLRRMTTERDSL 334
Cdd:COG1196 195 LGELERQLEPLERQAEKA-ERYRELKEELKELEAELLllklRELEA-ELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 335 RERLKIAQEtAFNEK----AHLEQRIEELEcTVHNLDDERMEQmsnmtlMKETITTVEKEMKSLARKAMDTESELGRQKA 410
Cdd:COG1196 273 RLELEELEL-ELEEAqaeeYELLAELARLE-QDIARLEERRRE------LEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 411 ENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLD 490
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 491 KKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHDNDNLQ 570
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 571 EQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEV---NKLKNILKSEESENRQIMDQLRKANEDAEN--WENKARQ 645
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAalaAALQNIVVEDDEVAAAAIEYLKAAKAGRATflPLDKIRA 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 646 TEADNNTLKLELITAEAEG-NRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTR 724
Cdd:COG1196 585 RAALAAALARGAIGAAVDLvASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTG 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 725 ELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRsqmtnERISMQNLEALLVANRDKEYQSQIALQEKESEI 804
Cdd:COG1196 665 GSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE-----RELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 918627528 805 QLLKEHLCLAENKMAIQSRDVaqfrnVVTQLEADLDITKRQL 846
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPP-----DLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
238-809 |
2.61e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 238 LKSTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREmmknckspksttahaiLRRVETER 317
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE----------------LARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 318 DVAFTDLRRMTTERDSLRERLKIAQEtafnEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARK 397
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEE----ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 398 AMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAIND 477
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 478 LAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIAR 557
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 558 ERDILAHDNDNLQEQFGKVKQENQALSKklndthnelndiKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAE 637
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKA------------AKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 638 NWENKARQTEADnnTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSAL 717
Cdd:COG1196 609 READARYYVLGD--TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 718 ADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQsqiaL 797
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD----L 762
|
570
....*....|..
gi 918627528 798 QEKESEIQLLKE 809
Cdd:COG1196 763 EELERELERLER 774
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
420-649 |
1.02e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 420 ENTEKDLSDTQRHLAKKKYELQLTQEKIMC-------LDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKK 492
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKAllkqlaaLERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 493 SENIASLgeslamkektisgmkniIAEMEQASRQSTEALIMCEQDISRMRRQLdetnDELAQIARERDILAHDNDNLQEQ 572
Cdd:COG4942 103 KEELAEL-----------------LRALYRLGRQPPLALLLSPEDFLDAVRRL----QYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 918627528 573 FGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEAD 649
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
356-837 |
1.13e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.33 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 356 IEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAK 435
Cdd:TIGR04523 49 LKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 436 KKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKN 515
Cdd:TIGR04523 129 LEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKK 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 516 I----------IAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDilaHDNDNLQEQFGKVKQENQA--- 582
Cdd:TIGR04523 209 KiqknkslesqISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN---KIKKQLSEKQKELEQNNKKike 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 583 LSKKLNDTHNELNDIK-QKVQDTNlevNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAE 661
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNnQKEQDWN---KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 662 AEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEE-------ELQKVQFEKVSALADLSSTRELCIKLDSSK 734
Cdd:TIGR04523 363 RELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeQIKKLQQEKELLEKEIERLKETIIKNNSEI 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 735 ELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERismQNLEallvanrdkeyQSQIALQEKESEIQLLKEHLCLA 814
Cdd:TIGR04523 443 KDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK---QNLE-----------QKQKELKSKEKELKKLNEEKKEL 508
|
490 500
....*....|....*....|...
gi 918627528 815 ENKMAIQSRDVAQFRNVVTQLEA 837
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKIEKLES 531
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
348-719 |
1.91e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 348 EKAHLEQRIEELECTVHNLDDERMEQmsnmtlmketittvEKEMKSLARKAMDTESELGRQKAENNSLrllyentEKDLS 427
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRI--------------ENRLDELSQELSDASRKIGEIEKEIEQL-------EQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 428 DTQRHLAKKKYELQLTQEKIMCLDEKIDnftrqniaqreeisilgaainDLAKEKECLQACLDKKSENIASLGESLAMke 507
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELK---------------------ELEARIEELEEDLHKLEEALNDLEARLSH-- 790
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 508 ktiSGMKNIIAEMEQAsrqstealimcEQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQfgkvkqenqalskkL 587
Cdd:TIGR02169 791 ---SRIPEIQAELSKL-----------EEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQ--------------R 842
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 588 NDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRL 667
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 918627528 668 KEKVDALNREVEqHLNAERSYKSQISTLHKSLVKMEEELQKVQfEKVSALAD 719
Cdd:TIGR02169 923 KAKLEALEEELS-EIEDPKGEDEEIPEEELSLEDVQAELQRVE-EEIRALEP 972
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
281-631 |
2.99e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 2.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 281 EQAQEEIARLRREMmkNCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETAFN---EKAHLEQRIE 357
Cdd:TIGR02169 691 SSLQSELRRIENRL--DELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENvksELKELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 358 ELECTVHNLDD-----ERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRqkaennslrllyentekdlsdtqrh 432
Cdd:TIGR02169 769 ELEEDLHKLEEalndlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR------------------------- 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 433 lakKKYELQLtqekimcLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEKTISG 512
Cdd:TIGR02169 824 ---LTLEKEY-------LEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 513 MKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARE--RDILAHDNDNLQEQFGKVKQENQALSKKLNDT 590
Cdd:TIGR02169 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPkgEDEEIPEEELSLEDVQAELQRVEEEIRALEPV 973
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 918627528 591 HNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRK 631
Cdd:TIGR02169 974 NMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
347-771 |
8.55e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 8.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 347 NEKAHLEQRIEELECTVHNLDDERME---QMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTE 423
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKlelLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 424 KDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQniaqreeISILGAAINDLAKEKE-----CLQACLDKKSENIAS 498
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQ-------LNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 499 LGESLAMKEKTISGMKNIIAEMEQASRQStealimcEQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQ------ 572
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELTNS-------ESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQindles 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 573 -FGKVKQENQALSKKL---------------------NDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLR 630
Cdd:TIGR04523 399 kIQNQEKLNQQKDEQIkklqqekellekeierlketiIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 631 KANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQhLNAERSYK-SQISTLHKSLVKMEEELQKV 709
Cdd:TIGR04523 479 KIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK-LESEKKEKeSKISDLEDELNKDDFELKKE 557
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 918627528 710 QFEKV----------------SALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTN 771
Cdd:TIGR04523 558 NLEKEideknkeieelkqtqkSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
336-855 |
1.42e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 336 ERLKIAQETAFNEKAHLEQRIEELEctvhnlddERMEQMSNMtlmKETITTVEKEMKSLARKAMDTESELGRQKAENNSL 415
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLE--------KFIKRTENI---EELIKEKEKELEEVLREINEISSELPELREELEKL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 416 RLLYENTEKdlsdTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKekeclqacLDKKSEN 495
Cdd:PRK03918 227 EKEVKELEE----LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE--------LKEKAEE 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 496 IASLGEslaMKEKTISGMKNIIAEMEQASRQsTEALIMCEQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGK 575
Cdd:PRK03918 295 YIKLSE---FYEEYLDELREIEKRLSRLEEE-INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAK 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 576 VKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENK-----ARQTEADN 650
Cdd:PRK03918 371 KEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 651 NTL----KLELITAEAEGNRLKEKVDALnREVEQHLNAERSYKSQISTLHK---SLVKMEEELQKVQFEKVSALA-DLSS 722
Cdd:PRK03918 451 KELleeyTAELKRIEKELKEIEEKERKL-RKELRELEKVLKKESELIKLKElaeQLKELEEKLKKYNLEELEKKAeEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 723 TRELCIKLDSSKELLNRQLVAKDQ---EIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQE 799
Cdd:PRK03918 530 LKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKD 609
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 918627528 800 KESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERER 855
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
463-675 |
1.55e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 463 AQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMR 542
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 543 RQLDETNDELAQIARER---------DILAHDNDNLQ-----EQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEV 608
Cdd:COG4942 97 AELEAQKEELAELLRALyrlgrqpplALLLSPEDFLDavrrlQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 918627528 609 NKLKNILKSEESENRQIMDQ----LRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALN 675
Cdd:COG4942 177 EALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
423-652 |
2.02e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 423 EKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGES 502
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 503 LAMKEKTISGMKNIIaemeqaSRQSTEALImceQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQA 582
Cdd:COG3883 95 LYRSGGSVSYLDVLL------GSESFSDFL---DRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 583 LSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNT 652
Cdd:COG3883 166 LEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAA 235
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
56-644 |
5.26e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 5.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 56 NQDTRQLEQEVKNQDKFISTLKLQIEDLKQTNHGLEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELIKIDQLAEQLEEE 135
Cdd:TIGR04523 102 NSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 136 KnfvvDTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSpSRLDSFVKTLEADRDYYKSEAQHLRKMLR 215
Cdd:TIGR04523 182 K----LNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQN-NQLKDNIEKKQQEINEKTTEISNTQTQLN 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 216 NRSKSPRRPSPSSRGANCDVE----LLKSTTRDREELKCMLEKYERH------------LAEIQGNVKVLTSERDKTFLL 279
Cdd:TIGR04523 257 QLKDEQNKIKKQLSEKQKELEqnnkKIKELEKQLNQLKSEISDLNNQkeqdwnkelkseLKNQEKKLEEIQNQISQNNKI 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 280 YEQAQEEIARLRREMM-----KNCKSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQEtafnEKAHLEQ 354
Cdd:TIGR04523 337 ISQLNEQISQLKKELTnseseNSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK----LNQQKDE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 355 RIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLA 434
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 435 KKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENI--ASLGESLAMKEKTISG 512
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEE 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 513 MKNIIAEMEQASRQSTEALIMCEQDISRMRRQLdETNDELAqiarerdilahdnDNLQEQFGKVKQENQALSKKLNDTHN 592
Cdd:TIGR04523 573 LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI-EEKEKKI-------------SSLEKELEKAKKENEKLSSIIKNIKS 638
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 918627528 593 ELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKAR 644
Cdd:TIGR04523 639 KKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELS 690
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
581-811 |
5.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 5.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 581 QALSKKLNDTHNELNDIKQKVQdtnlevnKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITA 660
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIA-------ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 661 EAEGNRLKEKVDALNREVEQHLNAerSYKSQISTLHKSLVKMEEELQkvqfeKVSALADLSSTRELCIKLDSSKELLNRQ 740
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRA--LYRLGRQPPLALLLSPEDFLD-----AVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 918627528 741 LVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQEKESEIQLLKEHL 811
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
535-724 |
5.65e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 5.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 535 EQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNI 614
Cdd:COG3883 29 QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 615 LKSEE---------------SENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVE 679
Cdd:COG3883 109 LGSESfsdfldrlsalskiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLS 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 918627528 680 QhlnAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTR 724
Cdd:COG3883 189 A---EEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
54-460 |
1.01e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 54 EKNQDTRQLEQEVKNQDKFISTLKLQIEDLKQTNHGLEEYVRKLLDSKEVVSSQVDDLTshnehlcKELIKIDQLAEQLE 133
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR-------KDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 134 EEknfvVDTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSPSRLDSFVKTLEADRDYYKSEAQHLRKM 213
Cdd:TIGR02168 747 ER----IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 214 LRNRSKSPRRPSPSSRGANCDVELLKSTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDktfllyeQAQEEIARLRRE 293
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA-------SLEEALALLRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 294 MmknckspksttahailrrveterDVAFTDLRRMTTERDSLRERLKIAQEtafnEKAHLEQRIEELECTVHNLDDERMEQ 373
Cdd:TIGR02168 896 L-----------------------EELSEELRELESKRSELRRELEELRE----KLAQLELRLEGLEVRIDNLQERLSEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 374 MSnmtLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEK 453
Cdd:TIGR02168 949 YS---LTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
....*..
gi 918627528 454 IDNFTRQ 460
Cdd:TIGR02168 1026 IDREARE 1032
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
543-771 |
1.17e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 543 RQLDETNDELAQIARERDILahdndnlqeqfgkvkQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESEN 622
Cdd:COG4913 235 DDLERAHEALEDAREQIELL---------------EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 623 RQimDQLRKANEDAEnwENKARQTEADNNTLKLELITAEAEGNR---LKEKVDALNREVEQHLNAERSYKSQISTLHKSL 699
Cdd:COG4913 300 LR--AELARLEAELE--RLEARLDALREELDELEAQIRGNGGDRleqLEREIERLERELEERERRRARLEALLAALGLPL 375
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 918627528 700 VKMEEELQKVQFEKVSALADLSSTRelcikldsskELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTN 771
Cdd:COG4913 376 PASAEEFAALRAEAAALLEALEEEL----------EALEEALAEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
54-791 |
1.76e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 54 EKNQDTRQLEQEVKN----------QDKFISTLKLQIEDLKQTNHGLEEYVRKLLDSKEVVSSQ---VDDLTSHNEHLCK 120
Cdd:TIGR01612 569 EENEDSIHLEKEIKDlfdkyleiddEIIYINKLKLELKEKIKNISDKNEYIKKAIDLKKIIENNnayIDELAKISPYQVP 648
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 121 ELIK-IDQLAEQLEEEKNFVV-DTADKELEEakIELIYQQNNITVLEDTIK--RLKSII-LETEKAQNKSPSRLDSFVKT 195
Cdd:TIGR01612 649 EHLKnKDKIYSTIKSELSKIYeDDIDALYNE--LSSIVKENAIDNTEDKAKldDLKSKIdKEYDKIQNMETATVELHLSN 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 196 LEADRDYYKSEAQHLRKMLRNRSKSPRRPSPSSRGANcdVELLKSTTRDREELKCMLEKYERHLAEI------QGNVKVL 269
Cdd:TIGR01612 727 IENKKNELLDIIVEIKKHIHGEINKDLNKILEDFKNK--EKELSNKINDYAKEKDELNKYKSKISEIknhyndQINIDNI 804
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 270 TSERDKTFllYEQAQEEIARLrremmknckSPKSTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKiAQETAFNE- 348
Cdd:TIGR01612 805 KDEDAKQN--YDKSKEYIKTI---------SIKEDEIFKIINEMKFMKDDFLNKVDKFINFENNCKEKID-SEHEQFAEl 872
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 349 --KAHLEQRIEELECTVHNLDDERmeqmsnmTLMKETITTVEKEMKSL-ARKAMDTESELGRQKAEN-----NSLRLLYE 420
Cdd:TIGR01612 873 tnKIKAEISDDKLNDYEKKFNDSK-------SLINEINKSIEEEYQNInTLKKVDEYIKICENTKESiekfhNKQNILKE 945
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 421 NTEKDLSDTQR-HLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREeisilgAAINDLAKEKECLQACLDKKSENIasL 499
Cdd:TIGR01612 946 ILNKNIDTIKEsNLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYE------AKNNELIKYFNDLKANLGKNKENM--L 1017
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 500 GESLAMKEKTISgmkNIIAEMEQASRQSTEALIMCEQDISRMrrqldetndelaqiarerdilahdNDNLQEQFGK-VKQ 578
Cdd:TIGR01612 1018 YHQFDEKEKATN---DIEQKIEDANKNIPNIEIAIHTSIYNI------------------------IDEIEKEIGKnIEL 1070
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 579 ENQALSKKLNDTHNELNDIKQKVQDTNL-------------EVNKLKNILKSEESENRQIMDQLRKANEDAENWENkarq 645
Cdd:TIGR01612 1071 LNKEILEEAEINITNFNEIKEKLKHYNFddfgkeenikyadEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYID---- 1146
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 646 tEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEEElqKVQFEKVSALaDLSSTRE 725
Cdd:TIGR01612 1147 -EIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKD--KTSLEEVKGI-NLSYGKN 1222
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 918627528 726 LCI----KLDSSKELLNRQLVAKDQEIEmmenELDSARSEIELLRSQMTNERISMQNLEALLVAN-RDKEY 791
Cdd:TIGR01612 1223 LGKlfleKIDEEKKKSEHMIKAMEAYIE----DLDEIKEKSPEIENEMGIEMDIKAEMETFNISHdDDKDH 1289
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
544-747 |
2.82e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 544 QLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKS------ 617
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraraly 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 618 EESENRQIMDQLRKANEDAE---NWENKARQTEADNNTLKlELITAEAEGNRLKEKVDALNREVEQHL----NAERSYKS 690
Cdd:COG3883 97 RSGGSVSYLDVLLGSESFSDfldRLSALSKIADADADLLE-ELKADKAELEAKKAELEAKLAELEALKaeleAAKAELEA 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 918627528 691 QISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQE 747
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
58-709 |
2.94e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 2.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 58 DTRQLEQEVKNQDKFISTLKLQIEDLKQTNHGLEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELIKIDQLAEQLEEEKN 137
Cdd:TIGR04523 48 ELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELN 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 138 fvvdTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAqnkspsrldsfVKTLEADRDYYKSEAQHLRKMLRNR 217
Cdd:TIGR04523 128 ----KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQ-----------KEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 218 SKSPRRPSPSsrgancdVELLKSTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKN 297
Cdd:TIGR04523 193 KNKLLKLELL-------LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 298 CKSpksttahaiLRRVETERDVAFTDLRRMTTERDSLR-ERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSN 376
Cdd:TIGR04523 266 KKQ---------LSEKQKELEQNNKKIKELEKQLNQLKsEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 377 MTLMKETITTVEKEMKSLarkamdteselgrqKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDN 456
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNS--------------ESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 457 FTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQ 536
Cdd:TIGR04523 403 QEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQ 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 537 DISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQKVQdtNLEVNKLKNILK 616
Cdd:TIGR04523 483 NLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN--KDDFELKKENLE 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 617 SEESENRQIMDQLRKANEDAEN----WENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQI 692
Cdd:TIGR04523 561 KEIDEKNKEIEELKQTQKSLKKkqeeKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKK 640
|
650
....*....|....*..
gi 918627528 693 STLHKSLVKMEEELQKV 709
Cdd:TIGR04523 641 NKLKQEVKQIKETIKEI 657
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
336-861 |
3.63e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 336 ERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSlarkAMDTESELGRQKAENnsl 415
Cdd:pfam05483 299 EDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEA----TTCSLEELLRTEQQR--- 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 416 rllYENTEKDLSDTQRHLAKKKYELqltqekimcldEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSEN 495
Cdd:pfam05483 372 ---LEKNEDQLKIITMELQKKSSEL-----------EEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGK 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 496 IASLGESLAMKEKTISGMkniiaEMEQASRQSTEALIMceQDISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGK 575
Cdd:pfam05483 438 EQELIFLLQAREKEIHDL-----EIQLTAIKTSEEHYL--KEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASD 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 576 VKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLR-KANEDAENwenkARQTEADNNTLK 654
Cdd:pfam05483 511 MTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKcKLDKSEEN----ARSIEYEVLKKE 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 655 LELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSK 734
Cdd:pfam05483 587 KQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 735 ELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQnleallvanRDKEYQSQIALQEKESEIQLLKehlcla 814
Cdd:pfam05483 667 KISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALM---------EKHKHQYDKIIEERDSELGLYK------ 731
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 918627528 815 eNKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELR 861
Cdd:pfam05483 732 -NKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
385-586 |
4.52e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 43.26 E-value: 4.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 385 TTVEKEMKSLARKAMDTESELgrqKAENNSLRLLYENTEKDLSDTQRHlakkkyeLQLTQEKIMCLDEKIDNFTRQNIAQ 464
Cdd:pfam15905 148 DGTQKKMSSLSMELMKLRNKL---EAKMKEVMAKQEGMEGKLQVTQKN-------LEHSKGKVAQLEEKLVSTEKEKIEE 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 465 REEISILGAAIndlaKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEalimceqDISRMRRQ 544
Cdd:pfam15905 218 KSETEKLLEYI----TELSCVSEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEKEQELSKQIK-------DLNEKCKL 286
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 918627528 545 LDETNDELAQIARERDI-LAHDNDNLQEQFGKVKQENQALSKK 586
Cdd:pfam15905 287 LESEKEELLREYEEKEQtLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
347-558 |
6.82e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 6.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 347 NEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDL 426
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 427 SDTQRHLAKKKYELQ-----------LTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSEN 495
Cdd:COG4942 100 EAQKEELAELLRALYrlgrqpplallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 918627528 496 IASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARE 558
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
668-796 |
7.56e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 7.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 668 KEKV-DALNREVEQ---HLNAERSYKSQistlhkslvkMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVA 743
Cdd:PRK09039 51 KDSAlDRLNSQIAEladLLSLERQGNQD----------LQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGE 120
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 918627528 744 KDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVA--NRDKEYQSQIA 796
Cdd:PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAseKRDRESQAKIA 175
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
90-725 |
7.89e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 7.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 90 LEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELIKIDQLAEQLEEEKNFVVDTaDKELEEAKIELIYQQNNITVLEDTIK 169
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSIT-LKEIERLSIEYNNAMDDYNNLKSALN 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 170 RLKSIiLETEKAQNKSPSRLDSFVKTLEADRDYYKSEAQHLRKMLRNRSKSPRRPSPSSRGANCDVELLKSTTrdrEELK 249
Cdd:PRK01156 243 ELSSL-EDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQIL---SNID 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 250 CMLEKYErhlaEIQGNVKVLTSERDktfllyeqaQEEIARLRREMMKNckspksttahailrrveterdvaftdlrrmtt 329
Cdd:PRK01156 319 AEINKYH----AIIKKLSVLQKDYN---------DYIKKKSRYDDLNN-------------------------------- 353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 330 ERDSLRERlKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITtveKEMKSLARKAMDTESELGRQK 409
Cdd:PRK01156 354 QILELEGY-EMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIK---KELNEINVKLQDISSKVSSLN 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 410 AENNSLRLLYENTEKDLSDTQ---------RHLAKKKYE--LQLTQEKIMCLDEKIDNFTRqniaqreEISILGAAINDL 478
Cdd:PRK01156 430 QRIRALRENLDELSRNMEMLNgqsvcpvcgTTLGEEKSNhiINHYNEKKSRLEEKIREIEI-------EVKDIDEKIVDL 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 479 AKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQldETNDELAQIAre 558
Cdd:PRK01156 503 KKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRT--SWLNALAVIS-- 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 559 rdilAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIK----QKVQDTNLEVNKLKNiLKSEESENRQIMDQLRKANE 634
Cdd:PRK01156 579 ----LIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKsyidKSIREIENEANNLNN-KYNEIQENKILIEKLRGKID 653
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 635 DAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEEELQKVQfEKV 714
Cdd:PRK01156 654 NYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK-KIK 732
|
650
....*....|.
gi 918627528 715 SALADLSSTRE 725
Cdd:PRK01156 733 KAIGDLKRLRE 743
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
689-863 |
8.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 8.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 689 KSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQ 768
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 769 M-----TNERISMQNLEALLV-------ANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRdvaqfRNVVTQLE 836
Cdd:COG4942 106 LaellrALYRLGRQPPLALLLspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE-----RAELEALL 180
|
170 180
....*....|....*....|....*..
gi 918627528 837 ADLDITKRQLGTERFERERAVQELRRQ 863
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKE 207
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
640-864 |
1.80e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 640 ENKARQTEAdnNTLKLELITAEaegnrLKEKVDALNREVEQhlnAERsYKsqisTLHKSLVKMEEELQKVQFEKVSA-LA 718
Cdd:COG1196 178 ERKLEATEE--NLERLEDILGE-----LERQLEPLERQAEK---AER-YR----ELKEELKELEAELLLLKLRELEAeLE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 719 DLSSTRElciKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQMTNERISMQNLEALLVANRDKEYQSQIALQ 798
Cdd:COG1196 243 ELEAELE---ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 918627528 799 EKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAVQELRRQN 864
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
607-785 |
2.50e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 607 EVNKLKNILKSEESENRQIMDQLRKANEDAENWENKARQTEADNNTLK--LELITAEAEGNRLKEKVDALNREVEQHLNA 684
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEklLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 685 ERSYKSqistLHKSLVKMEEELQKVQFEKVSALADLS-STRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIE 763
Cdd:COG4717 155 LEELRE----LEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180
....*....|....*....|..
gi 918627528 764 LLRSQMTNERISMQNLEALLVA 785
Cdd:COG4717 231 QLENELEAAALEERLKEARLLL 252
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
124-345 |
2.93e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 124 KIDQLAEQLEEEKNfVVDTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSPSRL-------DSFVKTL 196
Cdd:COG4942 21 AAAEAEAELEQLQQ-EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELaelekeiAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 197 EADRDYYKSEAQHLRKMLRNRSKSPRRPSPSSRGANCDVELLKSTTRDREELkcmLEKYERHLAEIQGNVKVLTSERDKT 276
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ---AEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 918627528 277 FLLYEQAQEEIARLRREMmknckspksTTAHAILRRVETERDVAFTDLRRMTTERDSLRERLKIAQETA 345
Cdd:COG4942 177 EALLAELEEERAALEALK---------AERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
238-411 |
3.52e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 238 LKSTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRREMMKNCKSPK------STTAHAILR 311
Cdd:COG4942 57 LAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPlalllsPEDFLDAVR 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 312 RVETERDVAFTDLRRMTTERDSLrERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQMSNMTLMKETITTVEKEM 391
Cdd:COG4942 137 RLQYLKYLAPARREQAEELRADL-AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
170 180
....*....|....*....|
gi 918627528 392 KSLARKAMDTESELGRQKAE 411
Cdd:COG4942 216 AELQQEAEELEALIARLEAE 235
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
324-679 |
3.54e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 324 LRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERMEQmsnmtlmketITTVEKEMKSLARKAMDTES 403
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE----------YLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 404 ELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMCLDEKIDNFTRQNIAQREEISILGAAINDLAKEKE 483
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 484 CLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERDILA 563
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 564 HDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKSEESENRQIMDQLRKANEDAENWENKA 643
Cdd:pfam02463 405 KEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQE 484
|
330 340 350
....*....|....*....|....*....|....*.
gi 918627528 644 RQTEADNNTLKLELITAEAEGNRLKEKVDALNREVE 679
Cdd:pfam02463 485 QLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
404-682 |
3.87e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.98 E-value: 3.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 404 ELGRQKAENNSLRLLYENTEKDL---SDTQRHLAKK-----KYELQLTQEKIMCLDEKIDNFTRQNIAQREEISilGAAI 475
Cdd:pfam12128 633 ELEKASREETFARTALKNARLDLrrlFDEKQSEKDKknkalAERKDSANERLNSLEAQLKQLDKKHQAWLEEQK--EQKR 710
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 476 NDLAKEKECLQACLDKKSENIASLGESLAMKEktiSGMKNIIAEMEQASRQSTEALIMCEQDISRMRRQLDETNDELAQI 555
Cdd:pfam12128 711 EARTEKQAYWQVVEGALDAQLALLKAAIAARR---SGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERI 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 556 ARERDILAHDNDNLQEQFgkvKQENQALSKKLNDTHNELNDIKQ----KVQDTNLEVNKLKNILKSEE------SEN-RQ 624
Cdd:pfam12128 788 AVRRQEVLRYFDWYQETW---LQRRPRLATQLSNIERAISELQQqlarLIADTKLRRAKLEMERKASEkqqvrlSENlRG 864
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 918627528 625 IMDQLRKANEDAENWenkarqteaDNNTLKLELITAEAEGNRLKEKVDALNREVEQHL 682
Cdd:pfam12128 865 LRCEMSKLATLKEDA---------NSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYV 913
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
53-293 |
4.85e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 53 AEKNQDTRQLEQEVKNQDKFISTLKLQIEDLKQTNHGLEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELIKIDQLAEQL 132
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 133 EEEK---NFVVDTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSPSRLDSFVKTLEADRDYYKSEAQH 209
Cdd:COG1196 322 EEELaelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 210 LRKMLRNRSKSPRRPSPSSRGANCDVELLKSTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIAR 289
Cdd:COG1196 402 LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
....
gi 918627528 290 LRRE 293
Cdd:COG1196 482 LLEE 485
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
538-870 |
5.01e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.27 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 538 ISRMRRQLDETNDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKLKNILKS 617
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 618 EESENRQIMDQLRKANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHK 697
Cdd:COG4372 106 LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQAL 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 698 SLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELlrsqmtNERISMQ 777
Cdd:COG4372 186 DELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELL------EEVILKE 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 778 NLEALLVANRDKEYQSQIALQEKESEIQLLKEHLCLAENKMAIQSRDVAQFRNVVTQLEADLDITKRQLGTERFERERAV 857
Cdd:COG4372 260 IEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAEL 339
|
330
....*....|...
gi 918627528 858 QELRRQNYSSNAY 870
Cdd:COG4372 340 ADLLQLLLVGLLD 352
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
62-648 |
7.00e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 7.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 62 LEQEVKNQDKFISTLKLQIEDLK---QTNHGLEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELIKIDQLAEQLEEEKNf 138
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEkfiKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 139 vvdtadkELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSPSRLDSfVKTLEADRDYY---KSEAQHLRKMLR 215
Cdd:PRK03918 239 -------EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYiklSEFYEEYLDELR 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 216 NRSKSPRRPSPSSRGANCDVELLKSTTRDREELKCMLEKYERHLAEIQGNVKvltserdktflLYEQAQEEIARLRR-EM 294
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-----------LYEEAKAKKEELERlKK 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 295 MKNCKSPKSttAHAILRRVETERDVAFTDLRRMTTERDSLRerlkiaqetafNEKAHLEQRIEELE--------CTVHNL 366
Cdd:PRK03918 380 RLTGLTPEK--LEKELEELEKAKEEIEEEISKITARIGELK-----------KEIKELKKAIEELKkakgkcpvCGRELT 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 367 DDERMEQMSNMTLmkeTITTVEKEMKSLARKAMDTESELGR-QKAENNSLRLLyenTEKDLSDTQRHLAKKKYELQLtqE 445
Cdd:PRK03918 447 EEHRKELLEEYTA---ELKRIEKELKEIEEKERKLRKELRElEKVLKKESELI---KLKELAEQLKELEEKLKKYNL--E 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 446 KIMCLDEKIDNFTRQNIAQREEISILGAAI---NDLAKEKECLQACLDKKSENIASL-GESLAMKEKTISGMKNIIAEME 521
Cdd:PRK03918 519 ELEKKAEEYEKLKEKLIKLKGEIKSLKKELeklEELKKKLAELEKKLDELEEELAELlKELEELGFESVEELEERLKELE 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 522 QASRQSTEA-------------LIMCEQDISRMRRQLDETNDELAQIARERDILAHDNDnlQEQFGKVKQENQALSKKLN 588
Cdd:PRK03918 599 PFYNEYLELkdaekelereekeLKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELA 676
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 589 DTHNELNDIKQKVQDTNLEVNKLKNILKsEESENRQIMDQLRKANEDAENWENKARQTEA 648
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELE-EREKAKKELEKLEKALERVEELREKVKKYKA 735
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
53-781 |
7.80e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.95 E-value: 7.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 53 AEKNQDTRQLEQEVKNQDKFISTLKLQIEDLKQTNHGLEEYVRKLLDSKEVVSSQVDDLTSHNEHLCKELiKIDQLAEQL 132
Cdd:pfam02463 275 KEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKEL-KELEIKREA 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 133 EEEKNFVVDTADKELEEAKIELIYQQNNITVLEDTIKRLKSIILETEKAQNKSPSRLDSFVKTLEADRDYYKSEAQHLRK 212
Cdd:pfam02463 354 EEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 213 MLRNRSKSPRRPSPSSRGANCDVELLKSTTRDREELKCMLEKYERHLAEIQGNVKVLTSERDKTFLLYEQAQEEIARLRR 292
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 293 EMMKNCKSPKSTTAHAILRRVETerdVAFTDLRRMTTERDSLRERLKIAQETAFNEKAHLEQRIEELECTVHNLDDERME 372
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLGDLGV---AVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLP 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 373 QMSNMTLMKETITTVEKEMKSLARKAMDTESELGRQKAENNSLRLLYENTEKDLSDTQRHLAKKKYELQLTQEKIMcLDE 452
Cdd:pfam02463 591 LKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKA-SLS 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 453 KIDNFTRQNIAQREEISILGAAINDLAKEKECLQACLDKKSENIASLGESLAMKEKTISGMKNIIAEMEQASRQSTEALI 532
Cdd:pfam02463 670 ELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEE 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 533 MCEQDISRMRRQLDET-NDELAQIARERDILAHDNDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQKVQDTNLEVNKL 611
Cdd:pfam02463 750 EEEEKSRLKKEEKEEEkSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK 829
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 612 KNILKSEESENRQIMDQLRKANEDAENWENKARQTEADN---NTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSY 688
Cdd:pfam02463 830 IKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELlqeLLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKL 909
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 689 KSQISTLHKSLVKMEEELQKVQFEKVSALADLSSTRELCIKLDSSKELLNRQLVAKDQEIEMMENELDSARSEIELLRSQ 768
Cdd:pfam02463 910 NLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEER 989
|
730
....*....|...
gi 918627528 769 MTNERISMQNLEA 781
Cdd:pfam02463 990 YNKDELEKERLEE 1002
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
632-805 |
8.55e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 8.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 632 ANEDAENWENKARQTEADNNTLKLELITAEAEGNRLKEKVDALNREVEQHLNAERSYKSQISTLHKSLVKMEEELQKV-- 709
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERar 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 710 -------QFEKVSALADLSSTRELCIKL-------DSSKELLNRQ------LVAKDQEIEMMENELDSARSEIELLRSQM 769
Cdd:COG3883 94 alyrsggSVSYLDVLLGSESFSDFLDRLsalskiaDADADLLEELkadkaeLEAKKAELEAKLAELEALKAELEAAKAEL 173
|
170 180 190
....*....|....*....|....*....|....*.
gi 918627528 770 TNERISMQNLEALLVANRDKEYQSQIALQEKESEIQ 805
Cdd:COG3883 174 EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
521-777 |
9.77e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 39.13 E-value: 9.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 521 EQASRQSTEALIMCEQDISRMRRQLDETNDELAQIARERdilahdnDNLQEQFGKVKQENQALSKKLNDTHNELNDIKQK 600
Cdd:pfam00038 39 QKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLEL-------DNLRLAAEDFRQKYEDELNLRTSAENDLVGLRKD 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 601 VQDTNLEVNKLKNILkseESENRQIMdqLRKANEDAENWENKARQTEAD-----NNTLKLELITAEAEGNRLKEKVDALN 675
Cdd:pfam00038 112 LDEATLARVDLEAKI---ESLKEELA--FLKKNHEEEVRELQAQVSDTQvnvemDAARKLDLTSALAEIRAQYEEIAAKN 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 918627528 676 REveqhlNAERSYKSQISTLHKSLVKMEEELQKVQFEkvsaLADLSST-RELCIKLDSSKElLNRQLVAKDQEIE-MMEN 753
Cdd:pfam00038 187 RE-----EAEEWYQSKLEELQQAAARNGDALRSAKEE----ITELRRTiQSLEIELQSLKK-QKASLERQLAETEeRYEL 256
|
250 260
....*....|....*....|....
gi 918627528 754 ELDSARSEIELLRSQMTNERISMQ 777
Cdd:pfam00038 257 QLADYQELISELEAELQETRQEMA 280
|
|
| |
