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Conserved domains on  [gi|724893160|ref|XP_010375532|]
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leucine-rich repeat-containing protein 39 [Rhinopithecus roxellana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
22-281 1.61e-40

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 146.62  E-value: 1.61e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  22 IKKHNEDLKREKEFQHKLVRIWEERVSLTKLREKVTREDGRVILKIEKEEWKTLPSSLLKLNQLQEWQLHRTgllkipEF 101
Cdd:COG4886   35 LALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------EE 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 102 IGRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNKIKIVPKELSNCASLEKLELAVNRdICDLPQELSNLLKLTHL 181
Cdd:COG4886  109 LSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQ-LTDLPEELGNLTNLKEL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 182 DLSMNHFTTIPLAVVNMPALEWLDMGSNKLEQLPDTIERMQNLHTLWLQRNEITCLPEtIRNMKNLGTLVLSNNKLQDIP 261
Cdd:COG4886  188 DLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLP 266

                        250       260
                 ....*....|....*....|
gi 724893160 262 VCmEEMANLRFVNFRDNPLK 281
Cdd:COG4886  267 PL-ANLTNLKTLDLSNNQLT 285
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
22-281 1.61e-40

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 146.62  E-value: 1.61e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  22 IKKHNEDLKREKEFQHKLVRIWEERVSLTKLREKVTREDGRVILKIEKEEWKTLPSSLLKLNQLQEWQLHRTgllkipEF 101
Cdd:COG4886   35 LALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------EE 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 102 IGRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNKIKIVPKELSNCASLEKLELAVNRdICDLPQELSNLLKLTHL 181
Cdd:COG4886  109 LSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQ-LTDLPEELGNLTNLKEL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 182 DLSMNHFTTIPLAVVNMPALEWLDMGSNKLEQLPDTIERMQNLHTLWLQRNEITCLPEtIRNMKNLGTLVLSNNKLQDIP 261
Cdd:COG4886  188 DLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLP 266

                        250       260
                 ....*....|....*....|
gi 724893160 262 VCmEEMANLRFVNFRDNPLK 281
Cdd:COG4886  267 PL-ANLTNLKTLDLSNNQLT 285
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 77-290 2.77e-22

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 98.00  E-value: 2.77e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  77 SSLLKLNQLQEWQLHRTGllKIPEFIGRFQNLIVLDLSRNTIS-EIPPGIGLLTRLQELILSYNKIK-IVPKELSNCASL 154
Cdd:PLN00113 329 TSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNNLTgEIPEGLCSSGNLFKLILFSNSLEgEIPKSLGACRSL 406

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 155 EKLELAVNRDICDLPQELSNLLKLTHLDLSMNHFT-TIPLAVVNMPALEWLDMGSNK-LEQLPDTIeRMQNLHTLWLQRN 232
Cdd:PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQgRINSRKWDMPSLQMLSLARNKfFGGLPDSF-GSKRLENLDLSRN 485

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 233 EIT-CLPETIRNMKNLGTLVLSNNKLQ-DIPVCMEEMANLRFVNFRDNPLKLEVSLPPSE 290
Cdd:PLN00113 486 QFSgAVPRKLGSLSELMQLKLSENKLSgEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 90-280 1.47e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 57.10  E-value: 1.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  90 LHRTGLLKIPEFIgRFQNLIVLDLSRNTISEIPpGIGLLTRLQELILSYNKI-KIVPkeLSNCASLEKLELAVNRdICDL 168
Cdd:cd21340    9 LNDKNITKIDNLS-LCKNLKVLYLYDNKITKIE-NLEFLTNLTHLYLQNNQIeKIEN--LENLVNLKKLYLGGNR-ISVV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 169 pqE-LSNLLKLTHLDLSMNHfttiplavvnmpalewLDMGsNKLEQLPDTIERMQN-LHTLWLQRNEITCLpETIRNMKN 246
Cdd:cd21340   84 --EgLENLTNLEELHIENQR----------------LPPG-EKLTFDPRSLAALSNsLRVLNISGNNIDSL-EPLAPLRN 143

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 724893160 247 LGTLVLSNNKLQDI-PVC--MEEMANLRFVNFRDNPL 280
Cdd:cd21340  144 LEQLDASNNQISDLeELLdlLSSWPSLRELDLTGNPV 180
LRR_8 pfam13855
Leucine rich repeat;
84-141 7.62e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.20  E-value: 7.62e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160   84 QLQEWQLHRTGLLKI-PEFIGRFQNLIVLDLSRNTISEIPPG-IGLLTRLQELILSYNKI 141
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLSPGaFSGLPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
22-281 1.61e-40

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 146.62  E-value: 1.61e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  22 IKKHNEDLKREKEFQHKLVRIWEERVSLTKLREKVTREDGRVILKIEKEEWKTLPSSLLKLNQLQEWQLHRTgllkipEF 101
Cdd:COG4886   35 LALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------EE 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 102 IGRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNKIKIVPKELSNCASLEKLELAVNRdICDLPQELSNLLKLTHL 181
Cdd:COG4886  109 LSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQ-LTDLPEELGNLTNLKEL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 182 DLSMNHFTTIPLAVVNMPALEWLDMGSNKLEQLPDTIERMQNLHTLWLQRNEITCLPEtIRNMKNLGTLVLSNNKLQDIP 261
Cdd:COG4886  188 DLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLP 266

                        250       260
                 ....*....|....*....|
gi 724893160 262 VCmEEMANLRFVNFRDNPLK 281
Cdd:COG4886  267 PL-ANLTNLKTLDLSNNQLT 285
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-334 4.13e-33

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 126.59  E-value: 4.13e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  73 KTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNKIKIVPKELSNCA 152
Cdd:COG4886  126 TDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLT 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 153 SLEKLELAVNRdICDLPQELSNLLKLTHLDLSMNHFTTIPlAVVNMPALEWLDMGSNKLEQLPDTIErMQNLHTLWLQRN 232
Cdd:COG4886  206 NLEELDLSGNQ-LTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQLTDLPPLAN-LTNLKTLDLSNN 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 233 EITCLpetirNMKNLGTLVLSNNKLQDIPVCMEEMANLRFVNFRDNPLKLEVSLPPSEGTDEEEERELFGLQFMHTYIQE 312
Cdd:COG4886  283 QLTDL-----KLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357

                        250       260
                 ....*....|....*....|..
gi 724893160 313 SQRRADHQVNGSTILPISINMD 334
Cdd:COG4886  358 LLSLLLTLLLTLGLLGLLEATL 379
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 77-290 2.77e-22

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 98.00  E-value: 2.77e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  77 SSLLKLNQLQEWQLHRTGllKIPEFIGRFQNLIVLDLSRNTIS-EIPPGIGLLTRLQELILSYNKIK-IVPKELSNCASL 154
Cdd:PLN00113 329 TSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTNNLTgEIPEGLCSSGNLFKLILFSNSLEgEIPKSLGACRSL 406

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 155 EKLELAVNRDICDLPQELSNLLKLTHLDLSMNHFT-TIPLAVVNMPALEWLDMGSNK-LEQLPDTIeRMQNLHTLWLQRN 232
Cdd:PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQgRINSRKWDMPSLQMLSLARNKfFGGLPDSF-GSKRLENLDLSRN 485

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 233 EIT-CLPETIRNMKNLGTLVLSNNKLQ-DIPVCMEEMANLRFVNFRDNPLKLEVSLPPSE 290
Cdd:PLN00113 486 QFSgAVPRKLGSLSELMQLKLSENKLSgEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 97-284 5.49e-20

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 91.06  E-value: 5.49e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  97 KIPEFIGRFQNLIVLDLSRNTIS-EIPPGIGLLTRLQELILSYNK-IKIVPKELSNCASLEKLELAVNRDICDLPQELSN 174
Cdd:PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVgKIPNSLTNLTSLEFLTLASNQlVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 175 LLKLTHLDLSMNHFT-TIPLAVVNMPALEWLDMGSNKLE-QLPDTIERMQNLHTLWLQRNEITC-LPETIRNMKNLGTLV 251
Cdd:PLN00113 235 LTSLNHLDLVYNNLTgPIPSSLGNLKNLQYLFLYQNKLSgPIPPSIFSLQKLISLDLSDNSLSGeIPELVIQLQNLEILH 314

                        170       180       190
                 ....*....|....*....|....*....|....
gi 724893160 252 L-SNNKLQDIPVCMEEMANLRFVNFRDNPLKLEV 284
Cdd:PLN00113 315 LfSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-304 2.39e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 85.37  E-value: 2.39e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  73 KTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNKIKIVPkELSNCA 152
Cdd:COG4886  172 TDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLT 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 153 SLEKLELAVNRdICDLPqELSNLLKLTHLDLSMNHFTTIPLAVVNMPALEWLDMGSNKLEQLPDTIERMQNLHTLWLQRN 232
Cdd:COG4886  251 NLEELDLSNNQ-LTDLP-PLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLL 328

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 724893160 233 EITCLPETIRNMKNLGTLVLSNNKLQDIPVCMEEMANLRFVNFRDNPLKLEVSLPPSEGTDEEEERELFGLQ 304
Cdd:COG4886  329 LLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGV 400
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
105-289 4.95e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 84.21  E-value: 4.95e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 105 FQNLIVLDLSRNTISEIPPGIGLLTRLQELILSYNKIKIVPKELSNCASLEKLELAVNRDICDLPQELSNLLKLTH---- 180
Cdd:COG4886   25 ILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTEldls 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 181 -------------LDLSMNHFTTIPLAVVNMPALEWLDMGSNKLEQLPDTIERMQNLHTLWLQRNEITCLPETIRNMKNL 247
Cdd:COG4886  105 gneelsnltnlesLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNL 184

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 724893160 248 GTLVLSNNKLQDIPVCMEEMANLRFVNFRDNPLKlevSLPPS 289
Cdd:COG4886  185 KELDLSNNQITDLPEPLGNLTNLEELDLSGNQLT---DLPEP 223
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
19-261 5.18e-14

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 72.81  E-value: 5.18e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  19 EKRIKKHNEDLKREKefqhklVRIWEERVSLTKLREKVTREDGRVILkiEKEEWKTLPSSLLklNQLQEWQLHRTGLLKI 98
Cdd:PRK15370 166 EEAVQRMRDCLKNNK------TELRLKILGLTTIPACIPEQITTLIL--DNNELKSLPENLQ--GNIKTLYANSNQLTSI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  99 PEFIGrfQNLIVLDLSRNTISEIPPGigLLTRLQELILSYNKIKIVPKELSNcaSLEKLELAVNrDICDLPQELSNllKL 178
Cdd:PRK15370 236 PATLP--DTIQEMELSINRITELPER--LPSALQSLDLFHNKISCLPENLPE--ELRYLSVYDN-SIRTLPAHLPS--GI 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 179 THLDLSMNHFT----TIPLAVVNM---------------PALEWLDMGSNKLEQLPDTIErmQNLHTLWLQRNEITCLPE 239
Cdd:PRK15370 307 THLNVQSNSLTalpeTLPPGLKTLeagenaltslpaslpPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPE 384

                        250       260
                 ....*....|....*....|..
gi 724893160 240 TIRnmKNLGTLVLSNNKLQDIP 261
Cdd:PRK15370 385 NLP--AALQIMQASRNNLVRLP 404
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 75-293 1.31e-13

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 71.80  E-value: 1.31e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  75 LPSSLLKLNQLQEWQLHRTGLL-KIPEFIGRFQNLIVLDLSRNTIS-EIPPGIGLLTRLQELILSYNKIK-IVPKELSNC 151
Cdd:PLN00113 252 IPSSLGNLKNLQYLFLYQNKLSgPIPPSIFSLQKLISLDLSDNSLSgEIPELVIQLQNLEILHLFSNNFTgKIPVALTSL 331

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 152 ASLEKLELAVNRDICDLPQELSNLLKLTHLDLSMNHFT-TIPLAVVNMPALEWLDMGSNKLE-QLPDTIERMQNLHTLWL 229
Cdd:PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTgEIPEGLCSSGNLFKLILFSNSLEgEIPKSLGACRSLRRVRL 411

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 724893160 230 QRNEITC-LPETIRNMKNLGTLVLSNNKLQ-DIPVCMEEMANLRFVNFRDNplKLEVSLPPSEGTD 293
Cdd:PLN00113 412 QDNSFSGeLPSEFTKLPLVYFLDISNNNLQgRINSRKWDMPSLQMLSLARN--KFFGGLPDSFGSK 475
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 66-217 2.44e-10

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 61.79  E-value: 2.44e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  66 KIEKEEWKtlpssllkLNQLQEWQLHRTGLL-KIPEFIGRfQNLIVLDLSRNTISE-IPPGIGLLTRLQELILSYNKIK- 142
Cdd:PLN00113 443 RINSRKWD--------MPSLQMLSLARNKFFgGLPDSFGS-KRLENLDLSRNQFSGaVPRKLGSLSELMQLKLSENKLSg 513

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 724893160 143 IVPKELSNCASLEKLELAVNRDICDLPQELSNLLKLTHLDLSMNHFT-TIPLAVVNMPALEWLDMGSNKLE-QLPDT 217
Cdd:PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSgEIPKNLGNVESLVQVNISHNHLHgSLPST 590
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 97-289 4.33e-10

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 61.02  E-value: 4.33e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  97 KIPEFIGRFQNLIVLDLSRNTIS-EIPPGIGLLT-RLQELILSYNKIK-IVPKELSNCasLEKLELAVNRDICDLPQELS 173
Cdd:PLN00113  84 KISSAIFRLPYIQTINLSNNQLSgPIPDDIFTTSsSLRYLNLSNNNFTgSIPRGSIPN--LETLDLSNNMLSGEIPNDIG 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 174 NLLKLTHLDLSMNHFT-TIPLAVVNMPALEWLDMGSNKLE-QLPDTIERMQNLHTLWLQRNEITC-LPETIRNMKNLGTL 250
Cdd:PLN00113 162 SFSSLKVLDLGGNVLVgKIPNSLTNLTSLEFLTLASNQLVgQIPRELGQMKSLKWIYLGYNNLSGeIPYEIGGLTSLNHL 241

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 724893160 251 VLSNNKLQ-DIPVCMEEMANLRFVNFRDNplKLEVSLPPS 289
Cdd:PLN00113 242 DLVYNNLTgPIPSSLGNLKNLQYLFLYQN--KLSGPIPPS 279
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 90-280 1.47e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 57.10  E-value: 1.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  90 LHRTGLLKIPEFIgRFQNLIVLDLSRNTISEIPpGIGLLTRLQELILSYNKI-KIVPkeLSNCASLEKLELAVNRdICDL 168
Cdd:cd21340    9 LNDKNITKIDNLS-LCKNLKVLYLYDNKITKIE-NLEFLTNLTHLYLQNNQIeKIEN--LENLVNLKKLYLGGNR-ISVV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 169 pqE-LSNLLKLTHLDLSMNHfttiplavvnmpalewLDMGsNKLEQLPDTIERMQN-LHTLWLQRNEITCLpETIRNMKN 246
Cdd:cd21340   84 --EgLENLTNLEELHIENQR----------------LPPG-EKLTFDPRSLAALSNsLRVLNISGNNIDSL-EPLAPLRN 143

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 724893160 247 LGTLVLSNNKLQDI-PVC--MEEMANLRFVNFRDNPL 280
Cdd:cd21340  144 LEQLDASNNQISDLeELLdlLSSWPSLRELDLTGNPV 180
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 25-277 1.09e-08

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 56.81  E-value: 1.09e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160   25 HNEDLKREKEFQHKLVRIWEERVSLTKLRE------KVTREDGRVILKIEKEEWK--------TLPSSLLKLNQLQEWQL 90
Cdd:PLN03210  609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNidlrgsKNLKEIPDLSMATNLETLKlsdcsslvELPSSIQYLNKLEDLDM 688

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160   91 HR---------------------TGLLKIPEFIGRFQNLIVLDLSRNTISEIPPGIGLlTRLQELILSYNKIKIVPKELS 149
Cdd:PLN03210  689 SRcenleilptginlkslyrlnlSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRL-ENLDELILCEMKSEKLWERVQ 767

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  150 NCA--------SLEKLELAVNRDICDLPQELSNLLKLTHLDLsMN--HFTTIPLAvVNMPALEWLDM-GSNKLEQLPDTi 218
Cdd:PLN03210  768 PLTplmtmlspSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI-ENciNLETLPTG-INLESLESLDLsGCSRLRTFPDI- 844

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  219 erMQNLHTLWLQRNEITCLPETIRNMKNLGTLVLSN-NKLQDIPVCMEEMANLRFVNFRD 277
Cdd:PLN03210  845 --STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGcNNLQRVSLNISKLKHLETVDFSD 902
PLN03150 PLN03150
hypothetical protein; Provisional
 98-176 2.72e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 49.04  E-value: 2.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  98 IPEFIGRFQNLIVLDLSRNTI-SEIPPGIGLLTRLQELILSYNKIK-IVPKELSNCASLEKLELAVNRDICDLPQELSNL 175
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIrGNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513


                 .
gi 724893160 176 L 176
Cdd:PLN03150 514 L 514
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 79-263 6.26e-06

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 47.35  E-value: 6.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  79 LLKLNQLQEWQlhrTGLLKIPEFIGRFQNLIVLDLSRNTIS-EIPPGIGLLTR---LQELILSYNKI-----KIVPKELS 149
Cdd:cd00116   57 CLSLNETGRIP---RGLQSLLQGLTKGCGLQELDLSDNALGpDGCGVLESLLRsssLQELKLNNNGLgdrglRLLAKGLK 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 150 NCA-SLEKLELAVNR----DICDLPQELSNLLKLTHLDLSMNHFTT--IPLAVVNMPALewldmgsnkleqlpdtiermQ 222
Cdd:cd00116  134 DLPpALEKLVLGRNRlegaSCEALAKALRANRDLKELNLANNGIGDagIRALAEGLKAN--------------------C 193

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 724893160 223 NLHTLWLQRNEITC-----LPETIRNMKNLGTLVLSNNKLQDIPVC 263
Cdd:cd00116  194 NLEVLDLNNNGLTDegasaLAETLASLKSLEVLNLGDNNLTDAGAA 239
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
42-289 1.94e-05

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 46.23  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  42 IWEERVSLTKLREKVTREDGRVILKiekeewktlpsSLLKLNQlQEWQLHRTGLLKIPEFIGrfQNLIVLDLSRNTISEI 121
Cdd:PRK15370 149 IWSEWVKEAPAKEAANREEAVQRMR-----------DCLKNNK-TELRLKILGLTTIPACIP--EQITTLILDNNELKSL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 122 PPGigLLTRLQELILSYNKIKIVPKELSNcaSLEKLELAVNRdICDLPqelsnllklthldlsmnhfttiplavvnmpal 201
Cdd:PRK15370 215 PEN--LQGNIKTLYANSNQLTSIPATLPD--TIQEMELSINR-ITELP-------------------------------- 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 202 ewldmgsnklEQLPDTiermqnLHTLWLQRNEITCLPETIRNmkNLGTLVLSNNKLQDIPVCMEemANLRFVNFRDNPLK 281
Cdd:PRK15370 258 ----------ERLPSA------LQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT 317


                 ....*....
gi 724893160 282 -LEVSLPPS 289
Cdd:PRK15370 318 aLPETLPPG 326
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
60-270 2.37e-05

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 45.92  E-value: 2.37e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  60 DGRVILKIEKEEWKTLPSSLLKlnQLQEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTISEIPPGI-------GLLTRLQ 132
Cdd:PRK15387 201 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLlelsifsNPLTHLP 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 133 ELILSYNKIKIVPKELSNCA----SLEKLELAVNRdICDLPQELSNLLKLTHLDLSMNHFTTIPlavvnmPALEWLDMGS 208
Cdd:PRK15387 279 ALPSGLCKLWIFGNQLTSLPvlppGLQELSVSDNQ-LASLPALPSELCKLWAYNNQLTSLPTLP------SGLQELSVSD 351

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 724893160 209 NKLEQLPDTierMQNLHTLWLQRNEITCLPETIRNMKNLgtlVLSNNKLQDIPVCMEEMANL 270
Cdd:PRK15387 352 NQLASLPTL---PSELYKLWAYNNRLTSLPALPSGLKEL---IVSGNRLTSLPVLPSELKEL 407
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 77-205 7.51e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 43.24  E-value: 7.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  77 SSLLKLNQLQewqLHRTGLLKIpEFIGRFQNLIVLDLSRNTISEI-------------------PPG----------IGL 127
Cdd:cd21340   43 EFLTNLTHLY---LQNNQIEKI-ENLENLVNLKKLYLGGNRISVVeglenltnleelhienqrlPPGekltfdprslAAL 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 128 LTRLQELILSYNKIKIVpKELSNCASLEKLELAVNR--DICDLPQELSNLLKLTHLDLSMNHFTTIPL----AVVNMPAL 201
Cdd:cd21340  119 SNSLRVLNISGNNIDSL-EPLAPLRNLEQLDASNNQisDLEELLDLLSSWPSLRELDLTGNPVCKKPKyrdkIILASKSL 197


                 ....
gi 724893160 202 EWLD 205
Cdd:cd21340  198 EVLD 201
LRR_8 pfam13855
Leucine rich repeat;
84-141 7.62e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 40.20  E-value: 7.62e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160   84 QLQEWQLHRTGLLKI-PEFIGRFQNLIVLDLSRNTISEIPPG-IGLLTRLQELILSYNKI 141
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLSPGaFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
106-163 1.32e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.43  E-value: 1.32e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  106 QNLIVLDLSRNTISEIPPGIGL-LTRLQELILSYNKIKIV-PKELSNCASLEKLELAVNR 163
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKgLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNR 60
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
75-259 1.59e-04

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 43.61  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  75 LPSSLLKL----NQL----------QEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTISEIPPGiglltrLQELILSYNK 140
Cdd:PRK15387 280 LPSGLCKLwifgNQLtslpvlppglQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSG------LQELSVSDNQ 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 141 IKIVPKELSNCASLekleLAVNRDICDLPQELSNLLKLThldLSMNHFTTIPLavvnMPA-LEWLDMGSNKLEQLPdtiE 219
Cdd:PRK15387 354 LASLPTLPSELYKL----WAYNNRLTSLPALPSGLKELI---VSGNRLTSLPV----LPSeLKELMVSGNRLTSLP---M 419

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 724893160 220 RMQNLHTLWLQRNEITCLPETIRNMKNLGTLVLSNNKLQD 259
Cdd:PRK15387 420 LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459
LRR_8 pfam13855
Leucine rich repeat;
222-280 1.94e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 39.04  E-value: 1.94e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 724893160  222 QNLHTLWLQRNEITCL-PETIRNMKNLGTLVLSNNKLQDI-PVCMEEMANLRFVNFRDNPL 280
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 213-284 3.94e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 42.11  E-value: 3.94e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 724893160 213 QLPDTIERMQNLHTLWLQRNEIT-CLPETIRNMKNLGTLVLSNNKLQ-DIPVCMEEMANLRFVNFRDNPLKLEV 284
Cdd:PLN03150 433 FIPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSLSGRV 506
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 175-257 9.60e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.77  E-value: 9.60e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 175 LLKLTHLDLSMNHFTTIPlAVVNMPALEWLDMGSNKLEQLPDtIERMQNLHTLWLQRNEITCLpETIRNMKNLGTLVLSN 254
Cdd:cd21340    1 LKRITHLYLNDKNITKID-NLSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKI-ENLENLVNLKKLYLGG 77


                 ...
gi 724893160 255 NKL 257
Cdd:cd21340   78 NRI 80
LRR_8 pfam13855
Leucine rich repeat;
199-257 1.12e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.73  E-value: 1.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 724893160  199 PALEWLDMGSNKLEQL-PDTIERMQNLHTLWLQRNEITCL-PETIRNMKNLGTLVLSNNKL 257
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
153-211 1.37e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 1.37e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 724893160  153 SLEKLELAVNRdICDLPQE-LSNLLKLTHLDLSMNHFTTIPLAV-VNMPALEWLDMGSNKL 211
Cdd:pfam13855   2 NLRSLDLSNNR-LTSLDDGaFKGLSNLKVLDLSNNLLTTLSPGAfSGLPSLRYLDLSGNRL 61
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 67-235 2.79e-03

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 39.39  E-value: 2.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  67 IEKEEWKTLPSSLLKLNQLQEWQLHRT--GLLKIPEFIGRFQ---NLIVLDLSRNTISEipPGIGLL-------TRLQEL 134
Cdd:COG5238  192 IGDEGIEELAEALTQNTTVTTLWLKRNpiGDEGAEILAEALKgnkSLTTLDLSNNQIGD--EGVIALaealknnTTVETL 269

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160 135 ILSYNKI-----KIVPKELSNCASLEKLELAVNRdICD-----LPQELSNLLKLTHLDLSMNHFTT---IPL--AVVNMP 199
Cdd:COG5238  270 YLSGNQIgaegaIALAKALQGNTTLTSLDLSVNR-IGDegaiaLAEGLQGNKTLHTLNLAYNGIGAqgaIALakALQENT 348

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 724893160 200 ALEWLDMGSNKL-----EQLPDTIERMQNLHTLWLQRNEIT 235
Cdd:COG5238  349 TLHSLDLSDNQIgdegaIALAKYLEGNTTLRELNLGKNNIG 389
PLN03150 PLN03150
hypothetical protein; Provisional
 121-195 5.37e-03

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 38.64  E-value: 5.37e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 724893160 121 IPPGIGLLTRLQELILSYNKIK-IVPKELSNCASLEKLELAVNRDICDLPQELSNLLKLTHLDLSMNHFT-TIPLAV 195
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSgRVPAAL 510
LRR_8 pfam13855
Leucine rich repeat;
177-234 9.67e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 34.04  E-value: 9.67e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 724893160  177 KLTHLDLSMNHFTTIPLAV-VNMPALEWLDMGSNKLEQL-PDTIERMQNLHTLWLQRNEI 234
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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