|
Name |
Accession |
Description |
Interval |
E-value |
| PRK06074 |
PRK06074 |
NADH dehydrogenase subunit C; Provisional |
16-195 |
4.16e-82 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 235691 [Multi-domain] Cd Length: 189 Bit Score: 242.51 E-value: 4.16e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 16 FGEYVAEILPKYIQQVQVTcFNELELLIHPDGIIPVLTFLRDHTNAQFKSLADLTAVDVPSRQYRFEIVYNLLSLRFNSR 95
Cdd:PRK06074 7 LVAKLLEKLPDAIGKVTVA-FGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSYKHNVR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 96 IRVKTYTDELTPVDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVV 175
Cdd:PRK06074 86 LRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQKRVV 165
|
170 180
....*....|....*....|
gi 700419632 176 AEPVELsqefrkfdlnSPWE 195
Cdd:PRK06074 166 YEPVTL----------SPWE 175
|
|
| NuoC |
COG0852 |
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ... |
18-174 |
2.81e-67 |
|
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440613 [Multi-domain] Cd Length: 164 Bit Score: 203.91 E-value: 2.81e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 18 EYVAEILPKYIQQVQVTcFNELELLIHPDGIIPVLTFLRDHtnAQFKSLADLTAVDVPSRQYRFEIVYNLLSLRFNSRIR 97
Cdd:COG0852 9 EALEEKFGDAVLEVEEA-RGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPERGDRFEVVYHLLSLTHNRRLR 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 700419632 98 VKTYTDELTP-VDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRV 174
Cdd:COG0852 86 LKVFVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYDEELKRL 163
|
|
| Complex1_30kDa |
pfam00329 |
Respiratory-chain NADH dehydrogenase, 30 Kd subunit; |
41-163 |
1.49e-59 |
|
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
Pssm-ID: 459763 [Multi-domain] Cd Length: 121 Bit Score: 183.06 E-value: 1.49e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 41 LLIHPDGIIPVLTFLRDHtNAQFKSLADLTAVDVPSRQyRFEIVYNLLSLRFNSRIRVKTYTDELTPVDSAVSVHKAANW 120
Cdd:pfam00329 1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYPEEG-RFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 700419632 121 YEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYV 163
Cdd:pfam00329 79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
|
|
| NuoC_fam |
TIGR01961 |
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ... |
43-161 |
1.53e-54 |
|
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]
Pssm-ID: 273897 [Multi-domain] Cd Length: 121 Bit Score: 170.10 E-value: 1.53e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 43 IHPDGIIPVLTFLRDHTnAQFKSLADLTAVDVPSRQyRFEIVYNLLSLRFNSRIRVKTYTDELTPVDSAVSVHKAANWYE 122
Cdd:TIGR01961 5 IKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYPKEK-RFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTANWYE 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 700419632 123 REVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSG 161
Cdd:TIGR01961 83 RETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK06074 |
PRK06074 |
NADH dehydrogenase subunit C; Provisional |
16-195 |
4.16e-82 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 235691 [Multi-domain] Cd Length: 189 Bit Score: 242.51 E-value: 4.16e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 16 FGEYVAEILPKYIQQVQVTcFNELELLIHPDGIIPVLTFLRDHTNAQFKSLADLTAVDVPSRQYRFEIVYNLLSLRFNSR 95
Cdd:PRK06074 7 LVAKLLEKLPDAIGKVTVA-FGELTLKVPAEKILEVLTFLRDDPELRFEQLIDLTGVDYPERGKRFEVVYHLLSYKHNVR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 96 IRVKTYTDELTPVDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRVV 175
Cdd:PRK06074 86 LRVKVRAPEDPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDDEQKRVV 165
|
170 180
....*....|....*....|
gi 700419632 176 AEPVELsqefrkfdlnSPWE 195
Cdd:PRK06074 166 YEPVTL----------SPWE 175
|
|
| NuoC |
COG0852 |
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ... |
18-174 |
2.81e-67 |
|
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440613 [Multi-domain] Cd Length: 164 Bit Score: 203.91 E-value: 2.81e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 18 EYVAEILPKYIQQVQVTcFNELELLIHPDGIIPVLTFLRDHtnAQFKSLADLTAVDVPSRQYRFEIVYNLLSLRFNSRIR 97
Cdd:COG0852 9 EALEEKFGDAVLEVEEA-RGELTLTVPPEDLVDVARFLRDD--LGFDHLSDLTGVDYPERGDRFEVVYHLLSLTHNRRLR 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 700419632 98 VKTYTDELTP-VDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEVKRV 174
Cdd:COG0852 86 LKVFVPRDDPvVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYVEVRYDEELKRL 163
|
|
| Complex1_30kDa |
pfam00329 |
Respiratory-chain NADH dehydrogenase, 30 Kd subunit; |
41-163 |
1.49e-59 |
|
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
Pssm-ID: 459763 [Multi-domain] Cd Length: 121 Bit Score: 183.06 E-value: 1.49e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 41 LLIHPDGIIPVLTFLRDHtNAQFKSLADLTAVDVPSRQyRFEIVYNLLSLRFNSRIRVKTYTDELTPVDSAVSVHKAANW 120
Cdd:pfam00329 1 VTVDPEDLLEVARFLRDD-ELGFDHLSDLTGVDYPEEG-RFEVVYHLLSITHNVRVRVKVPLEDDPVVPSVTDIWPGANW 78
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 700419632 121 YEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYV 163
Cdd:pfam00329 79 YEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
|
|
| NuoC_fam |
TIGR01961 |
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ... |
43-161 |
1.53e-54 |
|
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]
Pssm-ID: 273897 [Multi-domain] Cd Length: 121 Bit Score: 170.10 E-value: 1.53e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 43 IHPDGIIPVLTFLRDHTnAQFKSLADLTAVDVPSRQyRFEIVYNLLSLRFNSRIRVKTYTDELTPVDSAVSVHKAANWYE 122
Cdd:TIGR01961 5 IKKEQLLEVLTFLKDPA-LGFELLTDVSGVDYPKEK-RFEVVYHLLSIKKNRRIRLKVRLSEDDPVPSLTSVFPTANWYE 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 700419632 123 REVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSG 161
Cdd:TIGR01961 83 RETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
|
|
| PRK11742 |
PRK11742 |
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional |
31-158 |
5.23e-35 |
|
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain] Cd Length: 575 Bit Score: 130.04 E-value: 5.23e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 31 VQVTCFNELELLIHPDGIIPVLTFLRDHTNAqFKSLADLTAVDVPSRQYR-------FEIVYNLLSLRFNSRIRVKTYTD 103
Cdd:PRK11742 16 VQATRTGIPVVWVKREQLLEVLRFLRKLPKP-YVMLFDLHGIDERLRTHReglpaadFTVFYHLISIERNRDIMLKVALS 94
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 700419632 104 ELTP-VDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFP 158
Cdd:PRK11742 95 ENDLhVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYP 150
|
|
| PRK08491 |
PRK08491 |
NADH-quinone oxidoreductase subunit C; |
4-161 |
3.69e-31 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 181449 Cd Length: 263 Bit Score: 114.77 E-value: 3.69e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 4 PKNEVE----QKQLCAFGEYVaEILPKYIQqvqvtcFNELELLIHPDGIIPVLTFLRdhtNAQFKSLADLTAVDVPSRQY 79
Cdd:PRK08491 27 PKSYVEgsvfEKDLNHLSYKV-EILESYIE------LDQAVIWIKKDDNFKVLKILK---HLGYECLSEMSAIDFLAKKG 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 80 RFEIVYNLLSLRFNSRIRVKTYTDELTPVDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPL 159
Cdd:PRK08491 97 GFEVFYQLLSMSKRKRVRVKCFLKEKEALQSVSFLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPL 176
|
..
gi 700419632 160 SG 161
Cdd:PRK08491 177 KG 178
|
|
| PRK13292 |
PRK13292 |
NADH-quinone oxidoreductase subunit B/C/D; |
51-158 |
1.02e-29 |
|
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain] Cd Length: 788 Bit Score: 116.03 E-value: 1.02e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 51 VLTFLRDHTNAQFKSLADLTAVDVPSRQYR-----FEIVYNLLSLRFNSRIRVKTYTDELTP-VDSAVSVHKAANWYERE 124
Cdd:PRK13292 258 VLRHLKKRASSPFRRLEDLAAVDESCRRDRekfpdFTVNYHLLSFDTPGHVRIKTELRGRTPeLPSATGVFPAANWYERE 337
|
90 100 110
....*....|....*....|....*....|....
gi 700419632 125 VWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFP 158
Cdd:PRK13292 338 AFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHP 371
|
|
| PRK07785 |
PRK07785 |
NADH dehydrogenase subunit C; Provisional |
21-167 |
3.14e-27 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 181115 [Multi-domain] Cd Length: 235 Bit Score: 103.92 E-value: 3.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 21 AEILPKY---IQQVqVTCFNELELLIHPDGIIPVLTFLRDHTNAQFKSLADLTAVDVPSRQYR-FEIVYNLLSLRFNSRI 96
Cdd:PRK07785 71 EEALPEFadaIERV-VVDRGELTLHVRREHLVEVAQTLRDDPALRFELCLGVSGVHYPHDTGReLHAVYHLTSITHNRRI 149
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 700419632 97 RVKTYTDELTP-VDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGyVEVRY 167
Cdd:PRK07785 150 RLEVAVPDADPhIPSLVSVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYPLGG-IPVEY 220
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
18-171 |
2.20e-19 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 85.42 E-value: 2.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 18 EYVAEILPKYIQQVQVTCF-NELE-----LLIHPDGIIPVLTFLRDHTNAQFKSLADLTAVDVpsrQYRFEIVYNLLSLR 91
Cdd:PRK07735 280 KYVEVIKEKLGEDVLEDSYiNKLSkdvptLVVEPEKYYEVAELLRFHEQLAFDYLSELHGTDF---VTHMEVYVHLYSYG 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 92 FNSRIRVKTYTDELTP-VDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDFplsgyveVRYDDE 170
Cdd:PRK07735 357 KRQSVAVKVKLDREAPqVESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY-------EPYDVE 429
|
.
gi 700419632 171 V 171
Cdd:PRK07735 430 V 430
|
|
| HycE1 |
COG3262 |
Ni,Fe-hydrogenase III component G [Energy production and conversion]; |
24-180 |
1.15e-16 |
|
Ni,Fe-hydrogenase III component G [Energy production and conversion];
Pssm-ID: 442493 [Multi-domain] Cd Length: 523 Bit Score: 78.07 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 24 LPKYIQQVQVTCFNELELLIHPDGIIPVLTFLRDHTNAqfkSLADLTAVDVPSRQYRFEIVYNLLSLRFNSRIRVKTYTD 103
Cdd:COG3262 11 FGGSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGG---RLAALWGNDERELGGGFAVYYVFALEGEGALVTLKVSVP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 700419632 104 ELTPV-DSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGF-EG-HPFRKDFPLSGYVEVRYDDEVKRVVAEPVE 180
Cdd:COG3262 88 KDDPVfPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWpEGiYPLRKDFKGGPRPAPAPAEEYFRPVEGEGI 167
|
|
| PRK12494 |
PRK12494 |
NAD(P)H-quinone oxidoreductase subunit J; |
84-157 |
1.12e-11 |
|
NAD(P)H-quinone oxidoreductase subunit J;
Pssm-ID: 183557 [Multi-domain] Cd Length: 172 Bit Score: 60.74 E-value: 1.12e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 700419632 84 VYNLLSLRFNSR----IRVKTYTDELTP-VDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 157
Cdd:PRK12494 82 FYHLIKVSDNADkpreVRLKVFLPRDDPrVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
|
|
| ndhJ |
CHL00012 |
NADH dehydrogenase subunit J |
84-157 |
8.17e-09 |
|
NADH dehydrogenase subunit J
Pssm-ID: 176955 [Multi-domain] Cd Length: 158 Bit Score: 52.78 E-value: 8.17e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 700419632 84 VYNLLSLRFNS----RIRVKTYTDELTP-VDSAVSVHKAANWYEREVWDMYGVFFANHPDLRRILTDYGFEGHPFRKDF 157
Cdd:CHL00012 68 VYHLTRIQYGVdqpeEVCIKVFVPRKNPrIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
|
|
|