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Conserved domains on  [gi|688542101|ref|XP_009297610|]
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dnaJ homolog subfamily C member 7 isoform X1 [Danio rerio]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11419012)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Gene Ontology:  GO:0005515
PubMed:  10517866|30708253

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
terminal_TopJ super family cl41578
terminal organelle assembly protein TopJ;
406-497 2.62e-23

terminal organelle assembly protein TopJ;


The actual alignment was detected with superfamily member NF037946:

Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 102.59  E-value: 2.62e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 406 SKRKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHDLED 484
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAA------EIFAEINEAYEVLSNPEKRANYDKyGHDGVD 75

                         90
                 ....*....|...
gi 688542101 485 DDMNMDFDANNIF 497
Cdd:NF037946  76 GEGGFGFDAFDVF 88
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
211-427 2.83e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 93.15  E-value: 2.83e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 211 KAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACrnakalkakke 290
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL----------- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 291 eGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDT 370
Cdd:COG0457   83 -GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101 371 EQYEEAVRDYEKVYQTEKTKEHKNLLKNAQLELKKSKRKDYYKVLGVDKNATEDEIK 427
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
56-287 2.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.21  E-value: 2.98e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  56 EAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCH 135
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 136 LLLGNAMAAIRCLQKVLEREPDNSQAQQEMknaesileyermaeisfekrdfrmvvfcmdrvldsasachrfkvlkAECL 215
Cdd:COG0457   87 QALGRYEEALEDYDKALELDPDDAEALYNL----------------------------------------------GLAL 120

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 688542101 216 ALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACRNAKALKA 287
Cdd:COG0457  121 LELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
 
Name Accession Description Interval E-value
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
406-497 2.62e-23

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 102.59  E-value: 2.62e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 406 SKRKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHDLED 484
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAA------EIFAEINEAYEVLSNPEKRANYDKyGHDGVD 75

                         90
                 ....*....|...
gi 688542101 485 DDMNMDFDANNIF 497
Cdd:NF037946  76 GEGGFGFDAFDVF 88
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 410-497 9.81e-22

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 96.52  E-value: 9.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHDLED---- 484
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAE------EKFKEINEAYEVLSDPEKRAQYDQfGHAGFNgggg 74

                          90
                  ....*....|....
gi 688542101  485 -DDMNMDFDANNIF 497
Cdd:TIGR02349  75 gGGGGFNGFDIGFF 88
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 406-481 1.43e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 96.37  E-value: 1.43e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 688542101 406 SKRkDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYDS-GHD 481
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGdKEAEEK------FKEIKEAYEVLSDPQKRAAYDQyGHA 72
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
211-427 2.83e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 93.15  E-value: 2.83e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 211 KAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACrnakalkakke 290
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL----------- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 291 eGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDT 370
Cdd:COG0457   83 -GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101 371 EQYEEAVRDYEKVYQTEKTKEHKNLLKNAQLELKKSKRKDYYKVLGVDKNATEDEIK 427
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 410-477 3.44e-20

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 84.06  E-value: 3.44e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101  410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYD 477
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGdPEAEEK------FKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 410-484 9.90e-19

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 82.83  E-value: 9.90e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYD-SGHDLED 484
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGdPEAEEK------FKEINEAYEVLSDPEKRAAYDrFGHAAEL 71
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
56-287 2.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.21  E-value: 2.98e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  56 EAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCH 135
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 136 LLLGNAMAAIRCLQKVLEREPDNSQAQQEMknaesileyermaeisfekrdfrmvvfcmdrvldsasachrfkvlkAECL 215
Cdd:COG0457   87 QALGRYEEALEDYDKALELDPDDAEALYNL----------------------------------------------GLAL 120

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 688542101 216 ALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACRNAKALKA 287
Cdd:COG0457  121 LELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
DnaJ smart00271
DnaJ molecular chaperone homology domain;
409-472 2.52e-16

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 73.04  E-value: 2.52e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101   409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTVLSDPKK 472
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAE----EKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 410-469 7.05e-15

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 68.73  E-value: 7.05e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTVLSD 469
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE-----KFKEINEAYEVLSD 55
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 27-382 2.04e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 75.79  E-value: 2.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   27 PLYSKMATVdYDSSVDPEMDLT-----SDEELEREAEGFKEQGNAYYVKKDYAEAFNFYTKAIdLCPKNASYYGNRAATL 101
Cdd:TIGR00990  93 STAPKNAPV-EPADELPEIDESsvanlSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACH 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  102 MMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKvlerepdnSQAQQEMKNAESILEYERMAEIS 181
Cdd:TIGR00990 171 NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA--------SCIIDGFRNEQSAQAVERLLKKF 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  182 FEKRDFRMVVFCMDRVLDSASACHRFKVLKAEclallgryPEAQSVASDI-LRMDSTNGDA-LYVRGLCLYYEDCIDKAV 259
Cdd:TIGR00990 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPK--------PRPAGLEDSNeLDEETGNGQLqLGLKSPESKADESYEEAA 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  260 QFFVQALrmapdhEKARLACRNAKALKAKkeeGNKAFKEGSYEEAYELYTEALTIDPNNIKTnaklYCNRATVGSKLNKL 339
Cdd:TIGR00990 315 RAFEKAL------DLGKLGEKEAIALNLR---GTFKCLKGKHLEALADLSKSIELDPRVTQS----YIKRASMNLELGDP 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 688542101  340 EQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEK 382
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 282-382 7.03e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.90  E-value: 7.03e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 282 AKALKAKKEEgnkAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYL 361
Cdd:PLN03088   2 AKDLEDKAKE---AFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                         90       100
                 ....*....|....*....|.
gi 688542101 362 RRAQCYMDTEQYEEAVRDYEK 382
Cdd:PLN03088  75 RKGTACMKLEEYQTAKAALEK 95
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 52-179 7.70e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 60.57  E-value: 7.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  52 ELEREAEgfkeqgnAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMRE 131
Cdd:PLN03088   4 DLEDKAK-------EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 688542101 132 GKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMKNAEsileyERMAE 179
Cdd:PLN03088  77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD-----EKIAE 119
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 64-392 1.73e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.48  E-value: 1.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   64 GNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMA 143
Cdd:TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  144 AIRCLQKVLEREPDNSQAQQEMKNAESILEYERMAEISFEKRdfrmvvfcmdRVLDSASACHRFKVLKaecLAL-LGRYP 222
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA----------LSIEPDFFPAAANLAR---IDIqEGNPD 516

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  223 EAQSVASDILRMDSTNGDALyvRGLCLYYEDC--IDKAVQFFVQALRMAPDHEKARLA-----------------CRNAK 283
Cdd:TIGR02917 517 DAIQRFEKVLTIDPKNLRAI--LALAGLYLRTgnEEEAVAWLEKAAELNPQEIEPALAlaqyylgkgqlkkalaiLNEAA 594

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  284 ALKAKKEE-----GNKAFKEGSYEEAYELYTEALTIDPNNIKTNAKLycnrATVGSKLNKLEQAIEDCTKAIKLDETYIK 358
Cdd:TIGR02917 595 DAAPDSPEawlmlGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL----ADAYAVMKNYAKAITSLKRALELKPDNTE 670

                         330       340       350
                  ....*....|....*....|....*....|....
gi 688542101  359 AYLRRAQCYMDTEQYEEAVRDYeKVYQTEKTKEH 392
Cdd:TIGR02917 671 AQIGLAQLLLAAKRTESAKKIA-KSLQKQHPKAA 703
TPR_1 pfam00515
Tetratricopeptide repeat;
323-356 2.60e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.60e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 688542101  323 AKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETY 356
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
64-104 3.09e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 3.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 688542101   64 GNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMML 104
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 57-90 3.64e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 3.64e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 688542101    57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKN 90
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 58-170 1.47e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.69  E-value: 1.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  58 EGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLD-----DSFMK-GHMRE 131
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDpdggyEKYLYlGQLSG 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 688542101 132 GKchlllgnamAAIRCLQK---VLEREPDNSQAQQEMKNAES 170
Cdd:cd24142   81 GE---------EALQYYEKgieILEEELQALQAASAEAEEEA 113
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 323-356 4.93e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 4.93e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 688542101   323 AKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETY 356
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
406-497 2.62e-23

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 102.59  E-value: 2.62e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 406 SKRKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHDLED 484
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAA------EIFAEINEAYEVLSNPEKRANYDKyGHDGVD 75

                         90
                 ....*....|...
gi 688542101 485 DDMNMDFDANNIF 497
Cdd:NF037946  76 GEGGFGFDAFDVF 88
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 410-497 9.81e-22

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 96.52  E-value: 9.81e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHDLED---- 484
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAE------EKFKEINEAYEVLSDPEKRAQYDQfGHAGFNgggg 74

                          90
                  ....*....|....
gi 688542101  485 -DDMNMDFDANNIF 497
Cdd:TIGR02349  75 gGGGGFNGFDIGFF 88
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 406-481 1.43e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 96.37  E-value: 1.43e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 688542101 406 SKRkDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYDS-GHD 481
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGdKEAEEK------FKEIKEAYEVLSDPQKRAAYDQyGHA 72
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
211-427 2.83e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 93.15  E-value: 2.83e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 211 KAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACrnakalkakke 290
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL----------- 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 291 eGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDT 370
Cdd:COG0457   83 -GLALQALGRYEEALEDYDKALELDPDD----AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101 371 EQYEEAVRDYEKVYQTEKTKEHKNLLKNAQLELKKSKRKDYYKVLGVDKNATEDEIK 427
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 410-477 3.44e-20

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 84.06  E-value: 3.44e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101  410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYD 477
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGdPEAEEK------FKEINEAYEVLSDPEKRAIYD 63
PRK14289 PRK14289
molecular chaperone DnaJ;
408-480 7.20e-19

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 88.35  E-value: 7.20e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GH 480
Cdd:PRK14289   4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGdKEAE------EKFKEAAEAYDVLSDPDKRSRYDQfGH 72
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 410-484 9.90e-19

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 82.83  E-value: 9.90e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYD-SGHDLED 484
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGdPEAEEK------FKEINEAYEVLSDPEKRAAYDrFGHAAEL 71
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 124-415 6.17e-18

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.01  E-value: 6.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 124 FMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMKNA-ESILEYERmAEISFEKRdfrmvvfcMDRVLDSAS 202
Cdd:COG2956    7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLyRRRGEYDR-AIRIHQKL--------LERDPDRAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 203 ACHRFkvlkAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLacrna 282
Cdd:COG2956   78 ALLEL----AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC----- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 283 kalkakkEEGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLR 362
Cdd:COG2956  149 -------ELAELYLEQGDYDEAIEALEKALKLDPDC----ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPR 217

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 688542101 363 RAQCYMDTEQYEEAVRDYEKVYqtEKTKEHKNLLKNAQLELKKSKRKDYYKVL 415
Cdd:COG2956  218 LAELYEKLGDPEEALELLRKAL--ELDPSDDLLLALADLLERKEGLEAALALL 268
PRK14297 PRK14297
molecular chaperone DnaJ;
409-477 1.21e-17

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 84.83  E-value: 1.21e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14297   4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGnKEAE------EKFKEINEAYQVLSDPQKKAQYD 67
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 408-480 1.39e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 84.47  E-value: 1.39e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTVLSDPKKKTRYDS-GH 480
Cdd:PRK14277   4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQ-----KFKEINEAYEILSDPQKRAQYDQfGH 72
PRK14295 PRK14295
molecular chaperone DnaJ;
409-482 1.97e-17

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 84.13  E-value: 1.97e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDSGHDL 482
Cdd:PRK14295   9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGdAKAE------ERFKEISEAYDVLSDEKKRKEYDEARSL 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 57-382 2.40e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 82.08  E-value: 2.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHL 136
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 137 LLGNAMAAIRCLQKVLEREPDNSQAQQEMknaesileyermaeisfekrdfrmvvfcmdrvldsasachrfkvlkAECLA 216
Cdd:COG2956   88 KAGLLDRAEELLEKLLELDPDDAEALRLL----------------------------------------------AEIYE 121

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 217 LLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLAcrnakalkakkeEGNKAF 296
Cdd:COG2956  122 QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL------------LAELYL 189

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 297 KEGSYEEAYELYTEALTIDPNNIKTNAKLycnrATVGSKLNKLEQAIEDCTKAIKLDETyIKAYLRRAQCYMDTEQYEEA 376
Cdd:COG2956  190 EQGDYEEAIAALERALEQDPDYLPALPRL----AELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAA 264


                 ....*.
gi 688542101 377 VRDYEK 382
Cdd:COG2956  265 LALLER 270
termin_org_DnaJ TIGR03835
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ...
 408-494 2.57e-17

terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274808 [Multi-domain]  Cd Length: 871  Bit Score: 85.25  E-value: 2.57e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHDLEDDD 486
Cdd:TIGR03835   1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAA------SIFAEINEANDVLSNPKKRANYDKyGHDGVDRE 74


                  ....*...
gi 688542101  487 MNMDFDAN 494
Cdd:TIGR03835  75 DDFDFQAD 82
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
56-287 2.98e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 81.21  E-value: 2.98e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  56 EAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCH 135
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 136 LLLGNAMAAIRCLQKVLEREPDNSQAQQEMknaesileyermaeisfekrdfrmvvfcmdrvldsasachrfkvlkAECL 215
Cdd:COG0457   87 QALGRYEEALEDYDKALELDPDDAEALYNL----------------------------------------------GLAL 120

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 688542101 216 ALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACRNAKALKA 287
Cdd:COG0457  121 LELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
PRK14280 PRK14280
molecular chaperone DnaJ;
406-491 3.38e-17

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 83.23  E-value: 3.38e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 406 SKRkDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHdled 484
Cdd:PRK14280   2 AKR-DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGAD------EKFKEISEAYEVLSDDQKRAQYDQfGH---- 70


                 ....*..
gi 688542101 485 DDMNMDF 491
Cdd:PRK14280  71 AGPNQGF 77
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 406-498 5.21e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 82.59  E-value: 5.21e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 406 SKRKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHdled 484
Cdd:PRK14298   2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAE------EKFKEISEAYAVLSDAEKRAQYDRfGH---- 71

                         90
                 ....*....|....
gi 688542101 485 DDMNMDFDANNIFK 498
Cdd:PRK14298  72 AGIDNQYSAEDIFR 85
PRK14279 PRK14279
molecular chaperone DnaJ;
409-477 9.32e-17

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 82.09  E-value: 9.32e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14279   9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGdPAAE------ERFKAVSEAHDVLSDPAKRKEYD 72
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 409-497 1.00e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 81.90  E-value: 1.00e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTVLSDPKKKTRYD---------SG 479
Cdd:PRK14290   3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAE----EKFKEISEAYEVLSDPQKRRQYDqtgtvdfgaGG 78

                         90
                 ....*....|....*...
gi 688542101 480 HDLEDDDMNMDFDANNIF 497
Cdd:PRK14290  79 SNFNWDNFTHFSDINDIF 96
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 409-478 1.47e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 80.37  E-value: 1.47e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS 478
Cdd:PRK14299   4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAE------EKFKEINEAYTVLSDPEKRRIYDT 67
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 406-481 1.52e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 81.35  E-value: 1.52e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 688542101 406 SKRKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYDS-GHD 481
Cdd:PRK14294   1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGdKEAEEL------FKEAAEAYEVLSDPKKRGIYDQyGHE 72
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 238-385 1.52e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 82.73  E-value: 1.52e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 238 NGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACRNAKALKAKKEE-----GNKAFKEGSYEEAYELYTEAL 312
Cdd:COG3914   60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEalfnlGNLLLALGRLEEALAALRRAL 139

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 688542101 313 TIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ 385
Cdd:COG3914  140 ALNPDF----AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 408-497 1.69e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 81.41  E-value: 1.69e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GH------ 480
Cdd:PRK14283   4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAE------EKFKEISEAYAVLSDDEKRQRYDQfGHagmdgf 77

                         90       100
                 ....*....|....*....|....*.
gi 688542101 481 ---------DLEDDDMNMDFDANNIF 497
Cdd:PRK14283  78 sqedifnniNFEDIFQGFGFGIGNIF 103
DnaJ smart00271
DnaJ molecular chaperone homology domain;
409-472 2.52e-16

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 73.04  E-value: 2.52e-16
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101   409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTVLSDPKK 472
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAE----EKFKEINEAYEVLSDPEK 60
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 408-481 3.25e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 80.17  E-value: 3.25e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHD 481
Cdd:PRK14301   3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDnPEAE------QKFKEAAEAYEVLRDAEKRARYDRfGHA 72
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 409-477 4.01e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 80.13  E-value: 4.01e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14276   4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAE------EKYKEVQEAYETLSDPQKRAAYD 66
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 408-481 4.06e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 80.20  E-value: 4.06e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHD 481
Cdd:PRK14291   2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAE------EKFKEINEAYQVLSDPEKRKLYDQfGHA 70
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
55-188 1.34e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 76.58  E-value: 1.34e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  55 REAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKC 134
Cdd:COG0457   40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 688542101 135 HLLLGNAMAAIRCLQKVLEREPDNSQAQQEMKNAESILEYERMAEISFEKRDFR 188
Cdd:COG0457  120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAA 173
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 408-480 1.60e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 78.13  E-value: 1.60e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYDS-GH 480
Cdd:PRK14287   3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDK------FKEVKEAYDTLSDPQKKAHYDQfGH 70
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 410-477 4.35e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 77.19  E-value: 4.35e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGdAEAE------KRFKEVSEAYEVLSDAQKRESYD 64
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 408-477 6.01e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 76.37  E-value: 6.01e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeeKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14282   3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAE----QKFKEIQEAYEVLSDPQKRAMYD 68
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 410-469 7.05e-15

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 68.73  E-value: 7.05e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekKFKEVGEAFTVLSD 469
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEE-----KFKEINEAYEVLSD 55
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 408-480 8.02e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 76.39  E-value: 8.02e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGAS-AEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GH 480
Cdd:PRK14281   2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKeAE------EHFKEVNEAYEVLSNDDKRRRYDQfGH 70
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 410-497 1.38e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 75.31  E-value: 1.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYD-------SGHDL 482
Cdd:PRK14292   3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEK------FAQINEAYAVLSDAEKRAHYDrfgtapgAGMPG 76

                         90
                 ....*....|....*
gi 688542101 483 EDDDMNMDFDANNIF 497
Cdd:PRK14292  77 GDPFGGMGFDPMDIF 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 57-163 1.70e-14

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 70.42  E-value: 1.70e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHL 136
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96

                         90       100
                 ....*....|....*....|....*..
gi 688542101 137 LLGNAMAAIRCLQKVLEREPDNSQAQQ 163
Cdd:COG4235   97 QQGDYAEAIAAWQKLLALLPADAPARL 123
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 27-382 2.04e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 75.79  E-value: 2.04e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   27 PLYSKMATVdYDSSVDPEMDLT-----SDEELEREAEGFKEQGNAYYVKKDYAEAFNFYTKAIdLCPKNASYYGNRAATL 101
Cdd:TIGR00990  93 STAPKNAPV-EPADELPEIDESsvanlSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACH 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  102 MMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKvlerepdnSQAQQEMKNAESILEYERMAEIS 181
Cdd:TIGR00990 171 NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA--------SCIIDGFRNEQSAQAVERLLKKF 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  182 FEKRDFRMVVFCMDRVLDSASACHRFKVLKAEclallgryPEAQSVASDI-LRMDSTNGDA-LYVRGLCLYYEDCIDKAV 259
Cdd:TIGR00990 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPK--------PRPAGLEDSNeLDEETGNGQLqLGLKSPESKADESYEEAA 314

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  260 QFFVQALrmapdhEKARLACRNAKALKAKkeeGNKAFKEGSYEEAYELYTEALTIDPNNIKTnaklYCNRATVGSKLNKL 339
Cdd:TIGR00990 315 RAFEKAL------DLGKLGEKEAIALNLR---GTFKCLKGKHLEALADLSKSIELDPRVTQS----YIKRASMNLELGDP 381

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 688542101  340 EQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEK 382
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK 424
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
280-385 2.77e-14

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 72.26  E-value: 2.77e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 280 RNAKALKAKKEEGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKA 359
Cdd:COG4785   68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL----AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

                         90       100
                 ....*....|....*....|....*.
gi 688542101 360 YLRRAQCYMDTEQYEEAVRDYEKVYQ 385
Cdd:COG4785  144 YLNRGIALYYLGRYELAIADLEKALE 169
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 282-382 7.03e-14

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 72.90  E-value: 7.03e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 282 AKALKAKKEEgnkAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYL 361
Cdd:PLN03088   2 AKDLEDKAKE---AFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                         90       100
                 ....*....|....*....|.
gi 688542101 362 RRAQCYMDTEQYEEAVRDYEK 382
Cdd:PLN03088  75 RKGTACMKLEEYQTAKAALEK 95
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 409-481 9.14e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 72.78  E-value: 9.14e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDSGHD 481
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQ------EKFKEISVAYEVLSDPEKRRIVDLGGD 69
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 410-475 9.19e-14

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 65.79  E-value: 9.19e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSG-ASAEvqkeeeKKFKEVGEAFTVLSDPKKKTR 475
Cdd:COG5407    1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGdPKAE------ERFKEINEAYELLSDAEKRAR 61
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
406-477 1.06e-13

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 66.67  E-value: 1.06e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 688542101 406 SKRKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHsgasAEVQKEEEKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:COG2214    2 PDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRG----GELKALAEELFQRLNEAYEVLSDPERRAEYD 69
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 64-163 1.26e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 1.26e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  64 GNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMA 143
Cdd:COG3914  119 GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198

                         90       100
                 ....*....|....*....|
gi 688542101 144 AIRCLQKVLEREPDNSQAQQ 163
Cdd:COG3914  199 AIAAYRRALELDPDNADAHS 218
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 49-212 2.11e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 2.11e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  49 SDEELEREAEGFKEQGnayyvkkDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGH 128
Cdd:COG3914   77 LAALLELAALLLQALG-------RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAY 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 129 MREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEM--------KNAESILEYERMAEISFEKRDFR-MVVFCMDRVLD 199
Cdd:COG3914  150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLgnalqdlgRLEEAIAAYRRALELDPDNADAHsNLLFALRQACD 229

                        170
                 ....*....|...
gi 688542101 200 SASACHRFKVLKA 212
Cdd:COG3914  230 WEVYDRFEELLAA 242
PRK14293 PRK14293
molecular chaperone DnaJ;
410-477 2.82e-13

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 71.17  E-value: 2.82e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAE------DRFKEINRAYEVLSDPETRARYD 65
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
84-413 4.02e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 69.27  E-value: 4.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  84 IDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQq 163
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 164 emknaesileyermaeisfekrdfrmvvfcmdrvldsasachrfkVLKAECLALLGRYPEAQSVASDILRMDSTNGDALY 243
Cdd:COG0457   80 ---------------------------------------------NNLGLALQALGRYEEALEDYDKALELDPDDAEALY 114

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 244 VRGLCLYyedcidkavqffvqalrmapdhekarlacrnakalkakkeegnkafKEGSYEEAYELYTEALTIDPNNiktnA 323
Cdd:COG0457  115 NLGLALL----------------------------------------------ELGRYDEAIEAYERALELDPDD----A 144

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 324 KLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKNLLKNAQLEL 403
Cdd:COG0457  145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                        330
                 ....*....|
gi 688542101 404 KKSKRKDYYK 413
Cdd:COG0457  225 LALALLLALR 234
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
44-158 9.43e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 67.63  E-value: 9.43e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  44 EMDLTSDEELEREAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDS 123
Cdd:COG4785   60 AERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD 139

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 688542101 124 FMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDN 158
Cdd:COG4785  140 YAYAYLNRGIALYYLGRYELAIADLEKALELDPND 174
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 240-385 1.79e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.83  E-value: 1.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 240 DALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLAcrnakalkakkeEGNKAFKEGSYEEAYELYTEALTIDPNNi 319
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFAL------------LGEILLQLGDLDEAIVLLHEALELDPDE- 71

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 688542101 320 ktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ 385
Cdd:COG4783   72 ---PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 97-276 2.22e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.64  E-value: 2.22e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  97 RAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMknaesileyer 176
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNL----------- 152

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 177 maeisfekrdfrmvvfcmdrvldsasachrfkvlkAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCID 256
Cdd:COG3914  153 -----------------------------------GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197

                        170       180
                 ....*....|....*....|
gi 688542101 257 KAVQFFVQALRMAPDHEKAR 276
Cdd:COG3914  198 EAIAAYRRALELDPDNADAH 217
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 409-477 2.49e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 68.48  E-value: 2.49e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14286   4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG-----NKESEEKFKEATEAYEILRDPKKRQAYD 67
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 409-477 3.15e-12

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 68.31  E-value: 3.15e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRhsGASAEvqkeeekKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PTZ00037  28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDK--GGDPE-------KFKEISRAYEVLSDPEKRKIYD 87
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 407-484 3.82e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 67.66  E-value: 3.82e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101 407 KRKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHDLED 484
Cdd:PRK14296   2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAH------DKMVEINEAADVLLDKDKRKQYDQfGHAAFD 74
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 62-267 5.11e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.29  E-value: 5.11e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  62 EQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNA 141
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 142 MAAIRCLQKVLEREPDNSQAqqemknaesileYERMAEISFEKRDFRMVVFCMDRVLDSASACHRFKVLKAECLALLGRY 221
Cdd:COG2956  161 DEAIEALEKALKLDPDCARA------------LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 688542101 222 PEAQSVASDILRMDSTNGDALYVRGLCLYYEDcIDKAVQFFVQALR 267
Cdd:COG2956  229 EEALELLRKALELDPSDDLLLALADLLERKEG-LEAALALLERQLR 273
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 408-480 5.33e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 67.32  E-value: 5.33e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101 408 RKDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTVLSDPKKKTRYDS-GH 480
Cdd:PRK14285   2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKG-----NKEAESIFKEATEAYEVLIDDNKRAQYDRfGH 70
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
57-186 1.85e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 1.85e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHL 136
Cdd:COG0457   76 AEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 688542101 137 LLGNAMAAIRCLQKVLEREPDNSQAQQEMKNAESILEYERMAEISFEKRD 186
Cdd:COG0457  156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 54-184 2.81e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 2.81e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  54 EREAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGK 133
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 688542101 134 CHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMKNAESILEYERMAEISFEK 184
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 43-376 3.47e-11

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 65.88  E-value: 3.47e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   43 PEMDLTSDEELereAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDD 122
Cdd:TIGR02917 114 PGKTLLDDEGA---AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  123 SFMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAqqemknaesileYERMAEISFEKRDFRMVVFCMDRVLDSAS 202
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAV------------LLALATILIEAGEFEEAEKHADALLKKAP 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  203 ACHRFKVLKAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKAR--LAC- 279
Cdd:TIGR02917 259 NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARrlLASi 338

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  280 --RNAKALKAKKE-----------------EGNKAFKEGSYEEAYELYTEALTIDPNNIKTNAKLYCnratvgSKL--NK 338
Cdd:TIGR02917 339 qlRLGRVDEAIATlspalgldpddpaalslLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI------SKLsqGD 412

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 688542101  339 LEQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEA 376
Cdd:TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA 450
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 202-353 4.46e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.59  E-value: 4.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 202 SACHRFKVLKAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLAcrn 281
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN--- 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 688542101 282 akalkakkeEGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLD 353
Cdd:COG4783   78 ---------LGLALLKAGDYDEALALLEKALKLDPEH----PEAYLRLARAYRALGRPDEAIAALEKALELD 136
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
410-471 4.94e-11

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 58.65  E-value: 4.94e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 688542101 410 DYYKVLGVDKNATEDEIKKAYRKRALMHHPDRH-SGASAEVQKEEEKKFKEVGEAFTVLSDPK 471
Cdd:COG1076    5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLaAGLPEEEQRLALQKAAAINEAYETLKDPR 67
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 64-235 9.36e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 62.44  E-value: 9.36e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  64 GNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMA 143
Cdd:COG2956  117 AEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 144 AIRCLQKVLEREPDNSQAqqemknaesileYERMAEISFEKRDFRMVVFCMDRVLDSASACHRFKVLkAECLALLGRYPE 223
Cdd:COG2956  197 AIAALERALEQDPDYLPA------------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEA 263

                        170
                 ....*....|..
gi 688542101 224 AQSVASDILRMD 235
Cdd:COG2956  264 ALALLERQLRRH 275
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 18-156 1.32e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.97  E-value: 1.32e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  18 ASHASLHPPPLYSKMATVDYDSSVDPEMDLTSDEELEREAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNR 97
Cdd:COG5010   15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101  98 AATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKVLEREP 156
Cdd:COG5010   95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 57-158 1.81e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 1.81e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHL 136
Cdd:COG4783   38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117

                         90       100
                 ....*....|....*....|..
gi 688542101 137 LLGNAMAAIRCLQKVLEREPDN 158
Cdd:COG4783  118 ALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 257-383 2.06e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 58.48  E-value: 2.06e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 257 KAVQFFVQALRMAPDHEKARLACrnakalkakkeeGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKL 336
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLL------------GRAYLRLGRYDEALAAYEKALRLDPDN----ADALLDLAEALLAA 64

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 688542101 337 NKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKV 383
Cdd:COG4235   65 GDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 97-385 2.88e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 2.88e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  97 RAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMKNAESILEYER 176
Cdd:COG3914    4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 177 MAEISFEKRDFRMVVFCMDRVLDSASACHRFKVLKAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCID 256
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 257 KAVQFFVQALRMAPDHEKARLACrnAKALkakkeegnkaFKEGSYEEAYELYTEALTIDPNNIKTNAKLYCNRATVG--S 334
Cdd:COG3914  164 EAIAALRRALELDPDNAEALNNL--GNAL----------QDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACdwE 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 688542101 335 KLNKLEQAIEDCTKAIKLDETYIKAYLRRAqcymDTEQYEEAVRDYEKVYQ 385
Cdd:COG3914  232 VYDRFEELLAALARGPSELSPFALLYLPDD----DPAELLALARAWAQLVA 278
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 282-383 2.93e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.28  E-value: 2.93e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 282 AKALKAKKEEGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYL 361
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARL 76

                         90       100
                 ....*....|....*....|..
gi 688542101 362 RRAQCYMDTEQYEEAVRDYEKV 383
Cdd:COG4783   77 NLGLALLKAGDYDEALALLEKA 98
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 56-160 4.31e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 4.31e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  56 EAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCH 135
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222

                         90       100
                 ....*....|....*....|....*
gi 688542101 136 LLLGNAMAAIRCLQKVLEREPDNSQ 160
Cdd:COG2956  223 EKLGDPEEALELLRKALELDPSDDL 247
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 52-179 7.70e-10

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 60.57  E-value: 7.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  52 ELEREAEgfkeqgnAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMRE 131
Cdd:PLN03088   4 DLEDKAK-------EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 688542101 132 GKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMKNAEsileyERMAE 179
Cdd:PLN03088  77 GTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD-----EKIAE 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
295-385 7.84e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.95  E-value: 7.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 295 AFKEGSYEEAYELYTEALTIDPNniktNAKLYCNRATVGSKLNKLEQAIEdCTKAIKLDETYIKAYLRRAQCYMDTEQYE 374
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPD----NADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76

                         90
                 ....*....|.
gi 688542101 375 EAVRDYEKVYQ 385
Cdd:COG3063   77 EALAYLERALE 87
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 409-481 1.56e-09

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 59.64  E-value: 1.56e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEvqkeeeKKFKEVGEAFTVLSDPKKKTRYDS-GHD 481
Cdd:PRK14300   3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAE------KKFKEINAAYDVLKDEQKRAAYDRfGHD 70
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 64-392 1.73e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 60.48  E-value: 1.73e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   64 GNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMA 143
Cdd:TIGR02917 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  144 AIRCLQKVLEREPDNSQAQQEMKNAESILEYERMAEISFEKRdfrmvvfcmdRVLDSASACHRFKVLKaecLAL-LGRYP 222
Cdd:TIGR02917 450 ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA----------LSIEPDFFPAAANLAR---IDIqEGNPD 516

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  223 EAQSVASDILRMDSTNGDALyvRGLCLYYEDC--IDKAVQFFVQALRMAPDHEKARLA-----------------CRNAK 283
Cdd:TIGR02917 517 DAIQRFEKVLTIDPKNLRAI--LALAGLYLRTgnEEEAVAWLEKAAELNPQEIEPALAlaqyylgkgqlkkalaiLNEAA 594

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  284 ALKAKKEE-----GNKAFKEGSYEEAYELYTEALTIDPNNIKTNAKLycnrATVGSKLNKLEQAIEDCTKAIKLDETYIK 358
Cdd:TIGR02917 595 DAAPDSPEawlmlGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL----ADAYAVMKNYAKAITSLKRALELKPDNTE 670

                         330       340       350
                  ....*....|....*....|....*....|....
gi 688542101  359 AYLRRAQCYMDTEQYEEAVRDYeKVYQTEKTKEH 392
Cdd:TIGR02917 671 AQIGLAQLLLAAKRTESAKKIA-KSLQKQHPKAA 703
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 143-277 2.14e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.78  E-value: 2.14e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 143 AAIRCLQKVLEREPDNSQAqqemknaesileYERMAEISFEKRDFRMVVFCMDRVLDSASACHRFKVLKAECLALLGRYP 222
Cdd:COG4235    1 EAIARLRQALAANPNDAEG------------WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE 68

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 688542101 223 EAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARL 277
Cdd:COG4235   69 EAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 265-388 3.26e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 55.74  E-value: 3.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 265 ALRMAPDHEKARLACRNAKALKAKKEEGNKAFKEGSYEEAYELYTEALTIDPNNiktnAKLYCNRATVGSKLNKLEQAIE 344
Cdd:COG5010   34 ANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN----PELYYNLALLYSRSGDKDEAKE 109

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 688542101 345 DCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEK 388
Cdd:COG5010  110 YYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 63-409 4.08e-09

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 59.33  E-value: 4.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   63 QGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYRE--------------------------------- 109
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEaekhadallkkapnsplahylkalvdfqkknye 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  110 -ALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMknAESILEYERMAEISFEKRDFr 188
Cdd:TIGR02917 279 dARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL--ASIQLRLGRVDEAIATLSPA- 355

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  189 mvvfcMDRVLDSASAchrFKVLKAECLAlLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRM 268
Cdd:TIGR02917 356 -----LGLDPDDPAA---LSLLGEAYLA-LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL 426

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  269 APDHEKARLAC--------RNAKALKAKKE----EGNKA----------FKEGSYEEAYELYTEALTIDPNNIKTNAKLy 326
Cdd:TIGR02917 427 DPELGRADLLLilsylrsgQFDKALAAAKKlekkQPDNAslhnllgaiyLGKGDLAKAREAFEKALSIEPDFFPAAANL- 505

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  327 cnrATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKNLLKNAQLELKKS 406
Cdd:TIGR02917 506 ---ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ 582


                  ...
gi 688542101  407 KRK 409
Cdd:TIGR02917 583 LKK 585
PRK10266 PRK10266
curved DNA-binding protein;
409-477 1.14e-08

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 56.75  E-value: 1.14e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAEVQkeeekkFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK10266   4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR------FKEVAEAWEVLSDEQRRAEYD 66
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
66-160 1.55e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.09  E-value: 1.55e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  66 AYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEdSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAI 145
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|....*
gi 688542101 146 RCLQKVLEREPDNSQ 160
Cdd:COG3063   80 AYLERALELDPSALR 94
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
208-399 3.87e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 54.15  E-value: 3.87e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 208 KVLKAECLALLGRYPEAQsvasdilrMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLacrnakalka 287
Cdd:COG4785   50 AAALAAAALAAERIDRAL--------ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYN---------- 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 288 kkEEGNKAFKEGSYEEAYELYTEALTIDPNNIKTnaklYCNRATVGSKLNKLEQAIEDCTKAIKLD----ETYIKAYLRR 363
Cdd:COG4785  112 --NRGLAYLLLGDYDAALEDFDRALELDPDYAYA----YLNRGIALYYLGRYELAIADLEKALELDpndpERALWLYLAE 185

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 688542101 364 AQcYMDTEQYEEAVRDYEKVYQTEK-TKEHKNLLKNA 399
Cdd:COG4785  186 RK-LDPEKALALLLEDWATAYLLQGdTEEARELFKLA 221
djlA PRK09430
co-chaperone DjlA;
409-440 6.92e-08

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 53.66  E-value: 6.92e-08
                         10        20        30
                 ....*....|....*....|....*....|....
gi 688542101 409 KDYYKVLGVDKNATEDEIKKAYRKraLM--HHPD 440
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRK--LMseHHPD 231
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 168-318 7.50e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 7.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 168 AESILEYERMAEISFEKRDFRMVVFCMDRVLDSASACHRFKVLKAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGL 247
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 688542101 248 CLYYEDCIDKAVQFFVQALRMAPDHEKARLacRNAKALKAKkeegnkafkeGSYEEAYELYTEALTIDPNN 318
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYL--RLARAYRAL----------GRPDEAIAALEKALELDPDD 139
PRK14288 PRK14288
molecular chaperone DnaJ;
411-477 2.59e-07

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 52.77  E-value: 2.59e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101 411 YYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGasaevQKEEEKKFKEVGEAFTVLSDPKKKTRYD 477
Cdd:PRK14288   5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAG-----DKEAEEKFKLINEAYGVLSDEKKRALYD 66
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
66-161 4.37e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 4.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  66 AYYVKKDYAEAFNFYTKAID---LCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAM 142
Cdd:COG4785   45 ALALAAAALAAAALAAERIDralALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYD 124

                         90
                 ....*....|....*....
gi 688542101 143 AAIRCLQKVLEREPDNSQA 161
Cdd:COG4785  125 AALEDFDRALELDPDYAYA 143
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 402-484 4.40e-06

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 48.88  E-value: 4.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 402 ELKKSKRKDYYKVLGVDK---NATEDEIKKAYRKRALMHHPDRhsgASAEVQKEEEKKFKEVGEAFTVLSDPKKKTRYDS 478
Cdd:COG5269   36 DFKNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDK---TAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112


                 ....*.
gi 688542101 479 GHDLED 484
Cdd:COG5269  113 NDFDAD 118
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 56-121 1.72e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.80  E-value: 1.72e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 688542101  56 EAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLD 121
Cdd:COG4783   71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 223-365 1.73e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 1.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 223 EAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACrnAKALkakkeegnkaFKEGSYE 302
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL--AEAL----------LAAGDTE 68

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 688542101 303 EAYELYTEALTIDPNNIKTNAKLycnrATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQ 365
Cdd:COG4235   69 EAEELLERALALDPDNPEALYLL----GLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 66-171 1.82e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 43.83  E-value: 1.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  66 AYYVKKDYAEAFNFYTKAIDLCPK-----NASYYgnRAATLMMLSRYREALEDSQQAVRL--DDSFM-KGHMREGKCHLL 137
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNsplapDALYW--LGEAYYALGDYDEAAEAFEKLLKRypDSPKApDALLKLGLSYLE 79

                         90       100       110
                 ....*....|....*....|....*....|....
gi 688542101 138 LGNAMAAIRCLQKVLEREPDNSQAQQEMKNAESI 171
Cdd:COG1729   80 LGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 219-319 1.96e-05

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 47.39  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  219 GRYPEAQSVASDILRMDSTNGDAlyVRGLC-LYYEDCIDKAVQFfVQALrmAPDHEKARLACRNAKALKAKKEEGNKAFK 297
Cdd:PRK11447  399 KDYAAAERYYQQALRMDPGNTNA--VRGLAnLYRQQSPEKALAF-IASL--SASQRRSIDDIERSLQNDRLAQQAEALEN 473

                          90       100
                  ....*....|....*....|..
gi 688542101  298 EGSYEEAYELYTEALTIDPNNI 319
Cdd:PRK11447  474 QGKWAQAAELQRQRLALDPGSV 495
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 54-186 2.73e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 2.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   54 EREAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKnasyygnrAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGK 133
Cdd:TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--------SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 688542101  134 CHLLLGN-AMA------AIRCLQKVLEREPDNSQA-------QQEMKNAESIleyeRMAEISFEKRD 186
Cdd:TIGR02917 772 LRTALAElYLAqkdydkAIKHYQTVVKKAPDNAVVlnnlawlYLELKDPRAL----EYAERALKLAP 834
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 219-408 4.20e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 4.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  219 GRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLAcrnakalkakkeEGNKAFKE 298
Cdd:TIGR02917 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA------------LATILIEA 240

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  299 GSYEEAYELYTEALTIDPNNIKTNAKlycnRATVGSKLNKLEQAIEDCTKAIKLDETYIKA-YLRRAQCYM--DTEQYEE 375
Cdd:TIGR02917 241 GEFEEAEKHADALLKKAPNSPLAHYL----KALVDFQKKNYEDARETLQDALKSAPEYLPAlLLAGASEYQlgNLEQAYQ 316

                         170       180       190
                  ....*....|....*....|....*....|...
gi 688542101  376 AVRDYEKvyQTEKTKEHKNLLKNAQLELKKSKR 408
Cdd:TIGR02917 317 YLNQILK--YAPNSHQARRLLASIQLRLGRVDE 347
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 214-316 6.92e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.41  E-value: 6.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 214 CLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACRNAKAlkakkeegn 293
Cdd:COG5010   63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL--------- 133

                         90       100
                 ....*....|....*....|...
gi 688542101 294 kafKEGSYEEAYELYTEALTIDP 316
Cdd:COG5010  134 ---SLGQDDEAKAALQRALGTSP 153
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 293-481 7.95e-05

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 45.55  E-value: 7.95e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  293 NKAFKEGSYEEAYELYTEALTIDPNNIKTNAKLYCNRATVGSklNKLEQAIEDCTKAIKLDETYIKAYLRRAQcymdtEQ 372
Cdd:PTZ00341  478 HQSVNEIVEEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDE--NEEQQTADEHVEEPTIAEEHVEEEISTAE-----EH 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  373 YEEAVRDYEKVYQTEKTKEHKNLLknaqlelkkskrkdYYKVLGVDKNATEDEIKKAYRKRALMHHPDRHSGASAevqke 452
Cdd:PTZ00341  551 IEEPASDVQQDSEAAPTIEIPDTL--------------FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEG----- 611

                         170       180       190
                  ....*....|....*....|....*....|
gi 688542101  453 eEKKFKEVGEAFTVLSDPKKKTRYDS-GHD 481
Cdd:PTZ00341  612 -FHKFKKINEAYQILGDIDKKKMYNKfGYD 640
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 128-407 1.05e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  128 HMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEmknaesileyerMAEISFEKRDFRMVVFCMDRVLDSASACHRF 207
Cdd:TIGR02917  25 LIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFL------------LGKIYLALGDYAAAEKELRKALSLGYPKNQV 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  208 KVLKAECLALLGRYPEAQSVASDILRMDSTNGDALY-VRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACRNAKAlk 286
Cdd:TIGR02917  93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLaLRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-- 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  287 akkeegnkafKEGSYEEAYELYTEALTIDPNNIKtnAKLYcnRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQC 366
Cdd:TIGR02917 171 ----------AENRFDEARALIDEVLTADPGNVD--ALLL--KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATI 236

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 688542101  367 YMDTEQYEEAVRDYEKVYQTEKTKEHKNLLKnAQLELKKSK 407
Cdd:TIGR02917 237 LIEAGEFEEAEKHADALLKKAPNSPLAHYLK-ALVDFQKKN 276
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
214-317 1.09e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 1.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 214 CLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFvQALRMAPDHEKARLAcrnakalkakkeEGN 293
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLN------------LAE 67

                         90       100
                 ....*....|....*....|....
gi 688542101 294 KAFKEGSYEEAYELYTEALTIDPN 317
Cdd:COG3063   68 LLLELGDYDEALAYLERALELDPS 91
TPR_1 pfam00515
Tetratricopeptide repeat;
323-356 2.60e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 2.60e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 688542101  323 AKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETY 356
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
64-104 3.09e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.22  E-value: 3.09e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 688542101   64 GNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMML 104
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 294-386 3.63e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 3.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 294 KAFKEGSYEEAYELYTEALTIDPNNIKTNAKLYcNRATVGSKLNKLEQAIEDCTKAIKL---DETYIKAYLRRAQCYMDT 370
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLEL 80

                         90
                 ....*....|....*.
gi 688542101 371 EQYEEAVRDYEKVYQT 386
Cdd:COG1729   81 GDYDKARATLEELIKK 96
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 57-90 3.64e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 3.64e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 688542101    57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKN 90
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 323-385 4.41e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.56  E-value: 4.41e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 688542101 323 AKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ 385
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALE 66
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
64-123 5.84e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.00  E-value: 5.84e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  64 GNAYYVKKDYAEAFNFyTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDS 123
Cdd:COG3063   33 GLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 44-158 6.93e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 42.28  E-value: 6.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   44 EMDLTSDEELEREAEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDS 123
Cdd:TIGR00990 318 EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE 397

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 688542101  124 FMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDN 158
Cdd:TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 91-184 7.27e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 7.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  91 ASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLGNAMAAIRCLQKVLEREPDNSQAQQEMKNAES 170
Cdd:COG5010   54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLL 133

                         90
                 ....*....|....
gi 688542101 171 ILEYERMAEISFEK 184
Cdd:COG5010  134 SLGQDDEAKAALQR 147
TPR_1 pfam00515
Tetratricopeptide repeat;
57-90 1.28e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 1.28e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 688542101   57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKN 90
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 58-170 1.47e-03

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 40.69  E-value: 1.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  58 EGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLD-----DSFMK-GHMRE 131
Cdd:cd24142    1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDpdggyEKYLYlGQLSG 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 688542101 132 GKchlllgnamAAIRCLQK---VLEREPDNSQAQQEMKNAES 170
Cdd:cd24142   81 GE---------EALQYYEKgieILEEELQALQAASAEAEEEA 113
TPR_17 pfam13431
Tetratricopeptide repeat;
79-112 1.62e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.98  E-value: 1.62e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 688542101   79 FYTKAIDLCPKNASYYGNRAATLMMLSRYREALE 112
Cdd:pfam13431   1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 210-353 1.72e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.17  E-value: 1.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 210 LKAECLALLGRYPEAQSVASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACrnakalkakk 289
Cdd:COG5010   25 EKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL---------- 94

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101 290 eeGNKAFKEGSYEEAYELYTEALTIDPNniktNAKLYCNRATVGSKLNKLEQAIEDCTKAIKLD 353
Cdd:COG5010   95 --ALLYSRSGDKDEAKEYYEKALALSPD----NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 75-290 3.19e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 40.35  E-value: 3.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101   75 EAFNFYTKAIDLCPKNASYYGNRAATLMMLSRYREALEDSQQAVRLDDSFMKGHMREGKCHLLLG---NAMAAIRCLQKV 151
Cdd:TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGsiaSSMATFRRCKKN 462

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101  152 LEREPDNSQAQQEM-----KNAESILEYERMAEISFEKRDFRMVVFCMdrvLDSASACHRFKvlkaeclallGRYPEAQS 226
Cdd:TIGR00990 463 FPEAPDVYNYYGELlldqnKFDEAIEKFDTAIELEKETKPMYMNVLPL---INKALALFQWK----------QDFIEAEN 529

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688542101  227 VASDILRMDSTNGDALYVRGLCLYYEDCIDKAVQFFVQALRMAPDHEKARLACRNAKALKAKKE 290
Cdd:TIGR00990 530 LCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQ 593
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 341-385 4.50e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 4.50e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 688542101 341 QAIEDCTKAIKLDETYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ 385
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR 45
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 323-356 4.93e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.73  E-value: 4.93e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 688542101   323 AKLYCNRATVGSKLNKLEQAIEDCTKAIKLDETY 356
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
256-353 6.58e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.30  E-value: 6.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688542101 256 DKAVQFFVQALRMAPDHEKARLACrnakalkakkeeGNKAFKEGSYEEAYElYTEALTIDPNNiktnAKLYCNRATVGSK 335
Cdd:COG3063    9 EEAEEYYEKALELDPDNADALNNL------------GLLLLEQGRYDEAIA-LEKALKLDPNN----AEALLNLAELLLE 71

                         90
                 ....*....|....*...
gi 688542101 336 LNKLEQAIEDCTKAIKLD 353
Cdd:COG3063   72 LGDYDEALAYLERALELD 89
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 57-89 8.45e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.04  E-value: 8.45e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 688542101   57 AEGFKEQGNAYYVKKDYAEAFNFYTKAIDLCPK 89
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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