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Conserved domains on  [gi|528990681|ref|XP_005218721|]
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CCR4-NOT transcription complex subunit 1 isoform X8 [Bos taurus]

Protein Classification

CCR4-NOT transcription complex subunit 1( domain architecture ID 13872477)

CCR4-NOT transcription complex subunit 1 is a scaffolding component of the CCR4-NOT complex which is one of the major cellular mRNA deadenylases and is linked to various cellular processes including bulk mRNA degradation, miRNA-mediated repression, translational repression during translational initiation and general transcription regulation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CDC39 super family cl34904
Cell division control protein, negative regulator of transcription [Cell division and ...
 835-2371 0e+00

Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription];


The actual alignment was detected with superfamily member COG5103:

Pssm-ID: 227434 [Multi-domain]  Cd Length: 2005  Bit Score: 681.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  835 FSKEIDDEANSYFQRIYNHpphpTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGG 914
Cdd:COG5103   597 KEIDIEEEASSYIQQIYNS----QRGIESSINQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGS 672

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  915 IIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSR 994
Cdd:COG5103   673 LIKFRLLPKPYLRVAIRYIKGSLKHPENSKMFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNNRILIYKSIVEMDSNEN 752

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  995 DPPVKmqgsittpgsialaqaqaqaqvpakaplagqvstmvttsttttvaktvtvTRPTGvsfkkdvpPSINTTNIDTLL 1074
Cdd:COG5103   753 TEVEK--------------------------------------------------ANPTH--------PMLPLEDFVRLI 774

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1075 VATDQTERivEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP 1154
Cdd:COG5103   775 VKCDANNE--GRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVTQRSTAEENCRRLYGKVVERLGSK 852

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1155 EFNKMVLNETYRNIKVLLtsDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQqeLLYVVPFV 1234
Cdd:COG5103   853 DLYLRFSRKTLEFLKMLL--DYRCESPSEKKVLKNLGSWLGRITLAKNKPITSEQFDFKKFLVESVECRR--ILFVVPFV 928

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1235 AKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQlsap 1314
Cdd:COG5103   929 SKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIKPSKSLGNHLVLKSRLEK---- 1004

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1315 kkdvKQPEELPPITTTTTSTTPAtsttctatvppqpQYSYHDINVYSLAGLAPHITLNPtiplfqaHPQLKQCVRQAIER 1394
Cdd:COG5103  1005 ----ELPEDVLNAKFPDGTDYLA-------------QYIIEDSSQITVTDLVARHVGSP-------KPAIKNLTQLALDL 1060

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1395 AVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKnSFASALRT 1474
Cdd:COG5103  1061 SVREICGAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVR-SYAMKLCS 1139

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1475 ASPQQREMMDQAAAQlaqdNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQegRRYCDPVVLTYQAE---RMPEQ 1551
Cdd:COG5103  1140 VLDFSAEKVDKIAME----NQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRK--TTPNLPFVDPAAANlslNLPSS 1213

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1552 IRLKVGGVDPKQLAVYEEFARNVPGFLPTND--------LSQPTGFLAQPMKQAWATDDVAQiyDKCITELEQHLHAIPP 1623
Cdd:COG5103  1214 LELSIGKATPQQFSLYEDFDRLSLSTIMGHIekiainaiDTDSADSTDALNNNLNNTVENEA--NQTALEYQENLLIIKA 1291

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1624 TLAM----NPQA--QALRSLLEVVVLSRNSRDaiaalglLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQdgrayg 1697
Cdd:COG5103  1292 QLVQlskkIPYSskKNVIADEEHGLLKEGKNQ-------FETVFRRILESIASSDDKDLECIQLCRYILGHLSK------ 1358

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1698 SPWCNKQITRCL------------------IECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNyMAVAFAMQ 1759
Cdd:COG5103  1359 SPSKEEVLSRCLekickisfktqkevlgwlIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLADG-NVTDFAIA 1437

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1760 LVKILLVDERSVAHVteadlFHTIETLMRINAHSRGNAPEGLPQLMEVvrsnyeamidrahggpnfMMHSgISQASEYDd 1839
Cdd:COG5103  1438 LLASLVTAEVPICTV-----YDFICTLEMLAGSSDPKVKDFFQKISNT------------------MMHI-VAKGNKQQ- 1492

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1840 ppgLREKAEYLLREWVNLYHSAAAgRDSTKAfsAFVGQvellerkMHQQGILKTDDLITRFFRlcteMCVEISYRAQAEq 1919
Cdd:COG5103  1493 ---LNDQIIIVFSEWVELLRNCRF-NDTVPE--MFLPQ-------LMERGDYSASLDIRSFFK----VSLEHFIRAFHE- 1554

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1920 qhnpaANPTmirAKCYHNLDAFVRLIALLVKHSGEATNTVTkiNLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIML 1999
Cdd:COG5103  1555 -----RIPT---AYCYLKIDALPSLIKNRLYEEGSTEGTVS--VLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRI 1624

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2000 LLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLaHTPQQKGWPMYAQLLIDLFKYLAP 2079
Cdd:COG5103  1625 LIETLDVIDEDTSCFVNNRSVVYSIFEALQPSRFPGFTFAWLELLSHKFLLPKVL-LVNNDKINDLFSEGLMSFLKFLDL 1703

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2080 FLRNVELTkpMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSE 2159
Cdd:COG5103  1704 SEEGVVLV--MEALYCGFLRTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPH 1781

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2160 INIAPRIltnFTGVMPP--QFKKDLDSYLKTRSPV-TFLSDLRSNLQVSNEPGNRYNL---QLINALVLYVGTQAIahih 2233
Cdd:COG5103  1782 IKNFPNQ---FRDRIVPleGQNSFFDLEACLRSALqNRTSVKVTDLYIGKNTPLWVYLidnLNEMDAVSHTVVESI---- 1854

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2234 nKGSTPSMSTIthSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF--AEANTEA--IQEQITRV 2309
Cdd:COG5103  1855 -KFMIERFMHK--SEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFksHGYNPQKllIKEQMTTV 1931

                        1530      1540      1550      1560      1570      1580
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528990681 2310 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQV 2371
Cdd:COG5103  1932 LLERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSANNV 1993
CNOT1_HEAT pfam16418
CCR4-NOT transcription complex subunit 1 HEAT repeat; This domain is a HEAT repeat found in ...
 500-656 6.03e-55

CCR4-NOT transcription complex subunit 1 HEAT repeat; This domain is a HEAT repeat found in CCR4-NOT transcription complex subunit 1.


:

Pssm-ID: 465113  Cd Length: 146  Bit Score: 188.58  E-value: 6.03e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681   500 HELISTLMPIFLGNHPNSAIILHYAWHgqgQSPsirQLIMHAMAEWYMRgeqyDQAKLSRILDVAQDLKALSMLLNGTPF 579
Cdd:pfam16418    1 QELIDELFPLFLQGHPNSDLVLHSLWE---VDP---QLLLKRLVDYYAR----DPLNLSRILDVAQELKILDELLNLLPF 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528990681   580 AFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEkDQPKSAQLPPETLATMLACLQ 656
Cdd:pfam16418   71 NFALDLAALASRRGYLDLEKWLQDKLKEHGEPFAQALLDFLEIKAKLELEVQANQ-PEPSSVPLSVETVHTLLKVLQ 146
 
Name Accession Description Interval E-value
CDC39 COG5103
Cell division control protein, negative regulator of transcription [Cell division and ...
 835-2371 0e+00

Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription];


Pssm-ID: 227434 [Multi-domain]  Cd Length: 2005  Bit Score: 681.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  835 FSKEIDDEANSYFQRIYNHpphpTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGG 914
Cdd:COG5103   597 KEIDIEEEASSYIQQIYNS----QRGIESSINQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGS 672

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  915 IIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSR 994
Cdd:COG5103   673 LIKFRLLPKPYLRVAIRYIKGSLKHPENSKMFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNNRILIYKSIVEMDSNEN 752

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  995 DPPVKmqgsittpgsialaqaqaqaqvpakaplagqvstmvttsttttvaktvtvTRPTGvsfkkdvpPSINTTNIDTLL 1074
Cdd:COG5103   753 TEVEK--------------------------------------------------ANPTH--------PMLPLEDFVRLI 774

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1075 VATDQTERivEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP 1154
Cdd:COG5103   775 VKCDANNE--GRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVTQRSTAEENCRRLYGKVVERLGSK 852

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1155 EFNKMVLNETYRNIKVLLtsDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQqeLLYVVPFV 1234
Cdd:COG5103   853 DLYLRFSRKTLEFLKMLL--DYRCESPSEKKVLKNLGSWLGRITLAKNKPITSEQFDFKKFLVESVECRR--ILFVVPFV 928

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1235 AKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQlsap 1314
Cdd:COG5103   929 SKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIKPSKSLGNHLVLKSRLEK---- 1004

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1315 kkdvKQPEELPPITTTTTSTTPAtsttctatvppqpQYSYHDINVYSLAGLAPHITLNPtiplfqaHPQLKQCVRQAIER 1394
Cdd:COG5103  1005 ----ELPEDVLNAKFPDGTDYLA-------------QYIIEDSSQITVTDLVARHVGSP-------KPAIKNLTQLALDL 1060

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1395 AVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKnSFASALRT 1474
Cdd:COG5103  1061 SVREICGAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVR-SYAMKLCS 1139

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1475 ASPQQREMMDQAAAQlaqdNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQegRRYCDPVVLTYQAE---RMPEQ 1551
Cdd:COG5103  1140 VLDFSAEKVDKIAME----NQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRK--TTPNLPFVDPAAANlslNLPSS 1213

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1552 IRLKVGGVDPKQLAVYEEFARNVPGFLPTND--------LSQPTGFLAQPMKQAWATDDVAQiyDKCITELEQHLHAIPP 1623
Cdd:COG5103  1214 LELSIGKATPQQFSLYEDFDRLSLSTIMGHIekiainaiDTDSADSTDALNNNLNNTVENEA--NQTALEYQENLLIIKA 1291

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1624 TLAM----NPQA--QALRSLLEVVVLSRNSRDaiaalglLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQdgrayg 1697
Cdd:COG5103  1292 QLVQlskkIPYSskKNVIADEEHGLLKEGKNQ-------FETVFRRILESIASSDDKDLECIQLCRYILGHLSK------ 1358

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1698 SPWCNKQITRCL------------------IECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNyMAVAFAMQ 1759
Cdd:COG5103  1359 SPSKEEVLSRCLekickisfktqkevlgwlIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLADG-NVTDFAIA 1437

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1760 LVKILLVDERSVAHVteadlFHTIETLMRINAHSRGNAPEGLPQLMEVvrsnyeamidrahggpnfMMHSgISQASEYDd 1839
Cdd:COG5103  1438 LLASLVTAEVPICTV-----YDFICTLEMLAGSSDPKVKDFFQKISNT------------------MMHI-VAKGNKQQ- 1492

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1840 ppgLREKAEYLLREWVNLYHSAAAgRDSTKAfsAFVGQvellerkMHQQGILKTDDLITRFFRlcteMCVEISYRAQAEq 1919
Cdd:COG5103  1493 ---LNDQIIIVFSEWVELLRNCRF-NDTVPE--MFLPQ-------LMERGDYSASLDIRSFFK----VSLEHFIRAFHE- 1554

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1920 qhnpaANPTmirAKCYHNLDAFVRLIALLVKHSGEATNTVTkiNLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIML 1999
Cdd:COG5103  1555 -----RIPT---AYCYLKIDALPSLIKNRLYEEGSTEGTVS--VLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRI 1624

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2000 LLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLaHTPQQKGWPMYAQLLIDLFKYLAP 2079
Cdd:COG5103  1625 LIETLDVIDEDTSCFVNNRSVVYSIFEALQPSRFPGFTFAWLELLSHKFLLPKVL-LVNNDKINDLFSEGLMSFLKFLDL 1703

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2080 FLRNVELTkpMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSE 2159
Cdd:COG5103  1704 SEEGVVLV--MEALYCGFLRTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPH 1781

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2160 INIAPRIltnFTGVMPP--QFKKDLDSYLKTRSPV-TFLSDLRSNLQVSNEPGNRYNL---QLINALVLYVGTQAIahih 2233
Cdd:COG5103  1782 IKNFPNQ---FRDRIVPleGQNSFFDLEACLRSALqNRTSVKVTDLYIGKNTPLWVYLidnLNEMDAVSHTVVESI---- 1854

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2234 nKGSTPSMSTIthSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF--AEANTEA--IQEQITRV 2309
Cdd:COG5103  1855 -KFMIERFMHK--SEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFksHGYNPQKllIKEQMTTV 1931

                        1530      1540      1550      1560      1570      1580
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528990681 2310 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQV 2371
Cdd:COG5103  1932 LLERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSANNV 1993
Not1 pfam04054
CCR4-Not complex component, Not1; The Ccr4-Not complex is a global regulator of transcription ...
 2000-2355 0e+00

CCR4-Not complex component, Not1; The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID.


Pssm-ID: 427680  Cd Length: 365  Bit Score: 594.11  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2000 LLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAhTPQQKGWPMYAQLLIDLFKYLAP 2079
Cdd:pfam04054    1 LCELNSVEELLEEEDQEFLLAFASALHSLQPIYFPGFTFAWLSLISHRMFLPKLLR-LPDQKGWPLYTKLLIDLLKFLGE 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2080 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSE 2159
Cdd:pfam04054   80 YLKKAELSDVIKVLYKGTLRILLVLLHDFPEFLAENHYQLCNAIPPHCIQLRNIILSAFPRNMKLPDPFTPGLKVDRLPE 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2160 INIAPRILTNFTGVM-PPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSN-------EPGNRYNLQLINALVLYVGTQAIAH 2231
Cdd:pfam04054  160 IRQAPKILYDPVADLqEAGLKKPVDNYLRSIPSESLLATILHALYLSEyketgfgFVPISVNVKLINALVLYVGIHAVAE 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2232 IHNKGSTPSMStiTHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEA----IQEQIT 2307
Cdd:pfam04054  240 AQKKGSSAVFN--PKSPHVALLSNLIHELDPEGRYYLLSAIANQLRYPNSHTHYFSCVLLHLFGSDMSDPeeteIQEQIT 317

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*...
gi 528990681  2308 RVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLF 2355
Cdd:pfam04054  318 RVLLERLIVNRPHPWGLLITFIELLKNPKYNFWELPFIKAAPEIEELF 365
NOT1_connector cd20710
Connector domain of NOT1; This NOT1 connector domain is one of several catalytically inactive ...
 1597-1809 2.10e-60

Connector domain of NOT1; This NOT1 connector domain is one of several catalytically inactive subunits of the multisubunit CCR4-NOT complex assembly that plays a central role in post-translational gene regulation in eukaryotes. CCR4-NOT contains the catalytic center formed by two deadenylase subunits CCR4 and CAF1, and the conserved core complex which contains a minimum of four catalytically inactive subunits, NOT1, NOT2, NOT3 and CAF40/NOT9. NOT1 is the largest subunit which functions as a central scaffold for complex assembly in human orthologs. The Chaetomium thermophilum NOT1 connector domain consists of five alpha-helical hairpin repeats of the HEAT type that structurally resemble MIF4G domains, and hence is also called the MIF4G-C domain. However, NOT1 MIF4G-C does not interact with DEAD-box helicases such as DDX6 like MIF4G does. Structural conservation of this domain suggests an important role but its function is as yet unknown.


Pssm-ID: 411008 [Multi-domain]  Cd Length: 202  Bit Score: 206.34  E-value: 2.10e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1597 AWATDDVAQIYDKCITELEQHLHAIPPT-LAMNPQAQALRSLLEVVVLSRNSRDA--IAALGLLQKAVEGLLDATSgada 1673
Cdd:cd20710     1 ALSPDQLLERFDKLLAELERLLAEAPEEhISDLPPDHEIRSLLRQILQLIISSEQrdELALALAQKIVQLLYESSE---- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1674 dlLLRYRECHLLVLKALQDGraygSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMA 1753
Cdd:cd20710    77 --SQLAREVLVALLEKLCDL----SPKVAKEVTSWLIYSDDERKFNVPVTVALIRSGLLNLAEYDAQLAKLIENGRNPAA 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 528990681 1754 VAFAMQLVKILLVDERSVAhvTEADLFHTIETLMRINAHSRgnAPEGLPQLMEVVR 1809
Cdd:cd20710   151 LEFAAQLLRELLLDDRPVA--LRADFANTLEALAKLAQESP--SPEGLQQLLEKLR 202
CNOT1_HEAT pfam16418
CCR4-NOT transcription complex subunit 1 HEAT repeat; This domain is a HEAT repeat found in ...
 500-656 6.03e-55

CCR4-NOT transcription complex subunit 1 HEAT repeat; This domain is a HEAT repeat found in CCR4-NOT transcription complex subunit 1.


Pssm-ID: 465113  Cd Length: 146  Bit Score: 188.58  E-value: 6.03e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681   500 HELISTLMPIFLGNHPNSAIILHYAWHgqgQSPsirQLIMHAMAEWYMRgeqyDQAKLSRILDVAQDLKALSMLLNGTPF 579
Cdd:pfam16418    1 QELIDELFPLFLQGHPNSDLVLHSLWE---VDP---QLLLKRLVDYYAR----DPLNLSRILDVAQELKILDELLNLLPF 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528990681   580 AFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEkDQPKSAQLPPETLATMLACLQ 656
Cdd:pfam16418   71 NFALDLAALASRRGYLDLEKWLQDKLKEHGEPFAQALLDFLEIKAKLELEVQANQ-PEPSSVPLSVETVHTLLKVLQ 146
 
Name Accession Description Interval E-value
CDC39 COG5103
Cell division control protein, negative regulator of transcription [Cell division and ...
 835-2371 0e+00

Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription];


Pssm-ID: 227434 [Multi-domain]  Cd Length: 2005  Bit Score: 681.35  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  835 FSKEIDDEANSYFQRIYNHpphpTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGG 914
Cdd:COG5103   597 KEIDIEEEASSYIQQIYNS----QRGIESSINQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGS 672

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  915 IIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSR 994
Cdd:COG5103   673 LIKFRLLPKPYLRVAIRYIKGSLKHPENSKMFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNNRILIYKSIVEMDSNEN 752

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  995 DPPVKmqgsittpgsialaqaqaqaqvpakaplagqvstmvttsttttvaktvtvTRPTGvsfkkdvpPSINTTNIDTLL 1074
Cdd:COG5103   753 TEVEK--------------------------------------------------ANPTH--------PMLPLEDFVRLI 774

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1075 VATDQTERivEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP 1154
Cdd:COG5103   775 VKCDANNE--GRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVTQRSTAEENCRRLYGKVVERLGSK 852

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1155 EFNKMVLNETYRNIKVLLtsDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQqeLLYVVPFV 1234
Cdd:COG5103   853 DLYLRFSRKTLEFLKMLL--DYRCESPSEKKVLKNLGSWLGRITLAKNKPITSEQFDFKKFLVESVECRR--ILFVVPFV 928

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1235 AKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQlsap 1314
Cdd:COG5103   929 SKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIKPSKSLGNHLVLKSRLEK---- 1004

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1315 kkdvKQPEELPPITTTTTSTTPAtsttctatvppqpQYSYHDINVYSLAGLAPHITLNPtiplfqaHPQLKQCVRQAIER 1394
Cdd:COG5103  1005 ----ELPEDVLNAKFPDGTDYLA-------------QYIIEDSSQITVTDLVARHVGSP-------KPAIKNLTQLALDL 1060

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1395 AVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSISTNLKnSFASALRT 1474
Cdd:COG5103  1061 SVREICGAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVR-SYAMKLCS 1139

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1475 ASPQQREMMDQAAAQlaqdNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQegRRYCDPVVLTYQAE---RMPEQ 1551
Cdd:COG5103  1140 VLDFSAEKVDKIAME----NQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRK--TTPNLPFVDPAAANlslNLPSS 1213

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1552 IRLKVGGVDPKQLAVYEEFARNVPGFLPTND--------LSQPTGFLAQPMKQAWATDDVAQiyDKCITELEQHLHAIPP 1623
Cdd:COG5103  1214 LELSIGKATPQQFSLYEDFDRLSLSTIMGHIekiainaiDTDSADSTDALNNNLNNTVENEA--NQTALEYQENLLIIKA 1291

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1624 TLAM----NPQA--QALRSLLEVVVLSRNSRDaiaalglLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQdgrayg 1697
Cdd:COG5103  1292 QLVQlskkIPYSskKNVIADEEHGLLKEGKNQ-------FETVFRRILESIASSDDKDLECIQLCRYILGHLSK------ 1358

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1698 SPWCNKQITRCL------------------IECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNyMAVAFAMQ 1759
Cdd:COG5103  1359 SPSKEEVLSRCLekickisfktqkevlgwlIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLADG-NVTDFAIA 1437

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1760 LVKILLVDERSVAHVteadlFHTIETLMRINAHSRGNAPEGLPQLMEVvrsnyeamidrahggpnfMMHSgISQASEYDd 1839
Cdd:COG5103  1438 LLASLVTAEVPICTV-----YDFICTLEMLAGSSDPKVKDFFQKISNT------------------MMHI-VAKGNKQQ- 1492

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1840 ppgLREKAEYLLREWVNLYHSAAAgRDSTKAfsAFVGQvellerkMHQQGILKTDDLITRFFRlcteMCVEISYRAQAEq 1919
Cdd:COG5103  1493 ---LNDQIIIVFSEWVELLRNCRF-NDTVPE--MFLPQ-------LMERGDYSASLDIRSFFK----VSLEHFIRAFHE- 1554

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1920 qhnpaANPTmirAKCYHNLDAFVRLIALLVKHSGEATNTVTkiNLLNKVLGIVVGVLLQDHDVRQSEFQQLPYHRIFIML 1999
Cdd:COG5103  1555 -----RIPT---AYCYLKIDALPSLIKNRLYEEGSTEGTVS--VLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRI 1624

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2000 LLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLaHTPQQKGWPMYAQLLIDLFKYLAP 2079
Cdd:COG5103  1625 LIETLDVIDEDTSCFVNNRSVVYSIFEALQPSRFPGFTFAWLELLSHKFLLPKVL-LVNNDKINDLFSEGLMSFLKFLDL 1703

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2080 FLRNVELTkpMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSE 2159
Cdd:COG5103  1704 SEEGVVLV--MEALYCGFLRTILVYLHDFPGFLITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPH 1781

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2160 INIAPRIltnFTGVMPP--QFKKDLDSYLKTRSPV-TFLSDLRSNLQVSNEPGNRYNL---QLINALVLYVGTQAIahih 2233
Cdd:COG5103  1782 IKNFPNQ---FRDRIVPleGQNSFFDLEACLRSALqNRTSVKVTDLYIGKNTPLWVYLidnLNEMDAVSHTVVESI---- 1854

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 2234 nKGSTPSMSTIthSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF--AEANTEA--IQEQITRV 2309
Cdd:COG5103  1855 -KFMIERFMHK--SEILTMLWIRMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFksHGYNPQKllIKEQMTTV 1931

                        1530      1540      1550      1560      1570      1580
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528990681 2310 LLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQV 2371
Cdd:COG5103  1932 LLERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSANNV 1993
Not1 pfam04054
CCR4-Not complex component, Not1; The Ccr4-Not complex is a global regulator of transcription ...
 2000-2355 0e+00

CCR4-Not complex component, Not1; The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID.


Pssm-ID: 427680  Cd Length: 365  Bit Score: 594.11  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2000 LLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAhTPQQKGWPMYAQLLIDLFKYLAP 2079
Cdd:pfam04054    1 LCELNSVEELLEEEDQEFLLAFASALHSLQPIYFPGFTFAWLSLISHRMFLPKLLR-LPDQKGWPLYTKLLIDLLKFLGE 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2080 FLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSE 2159
Cdd:pfam04054   80 YLKKAELSDVIKVLYKGTLRILLVLLHDFPEFLAENHYQLCNAIPPHCIQLRNIILSAFPRNMKLPDPFTPGLKVDRLPE 159

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2160 INIAPRILTNFTGVM-PPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSN-------EPGNRYNLQLINALVLYVGTQAIAH 2231
Cdd:pfam04054  160 IRQAPKILYDPVADLqEAGLKKPVDNYLRSIPSESLLATILHALYLSEyketgfgFVPISVNVKLINALVLYVGIHAVAE 239

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  2232 IHNKGSTPSMStiTHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEA----IQEQIT 2307
Cdd:pfam04054  240 AQKKGSSAVFN--PKSPHVALLSNLIHELDPEGRYYLLSAIANQLRYPNSHTHYFSCVLLHLFGSDMSDPeeteIQEQIT 317

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|....*...
gi 528990681  2308 RVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLF 2355
Cdd:pfam04054  318 RVLLERLIVNRPHPWGLLITFIELLKNPKYNFWELPFIKAAPEIEELF 365
CNOT1_CAF1_bind pfam16415
CCR4-NOT transcription complex subunit 1 CAF1-binding domain; This is the CAF1-binding domain ...
 1083-1307 1.24e-124

CCR4-NOT transcription complex subunit 1 CAF1-binding domain; This is the CAF1-binding domain of CCR4-NOT transcription complex. It adopts a MIF4G (middle portion of eIF4G) fold.


Pssm-ID: 465111  Cd Length: 225  Bit Score: 391.48  E-value: 1.24e-124
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  1083 IVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLN 1162
Cdd:pfam16415    2 QEEPPEEVQDKILFIVNNLSEDNLESKLKELKELLEEEYYPWFAQYLVVKRASIEPNFHKLYLKLLDKLNSPLLYEEVLN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  1163 ETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQqeLLYVVPFVAKVLESSI 1242
Cdd:pfam16415   82 ETYRNIKVLLNSEKTLTSSSERSLLKNLGSWLGSITLARNKPILHKNIAFKELLLEAYDKGR--LIVVIPFVCKVLEQAK 159

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528990681  1243 RSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1307
Cdd:pfam16415  160 KSKVFKPPNPWTMGILKLLVELYHLADLKLNLKFEIEVLCKNLNLDIKDIEPSTLLRDRDRLEEL 224
CNOT1_TTP_bind pfam16417
CCR4-NOT transcription complex subunit 1 TTP binding domain; This is the TTP binding domain of ...
 816-999 8.79e-97

CCR4-NOT transcription complex subunit 1 TTP binding domain; This is the TTP binding domain of CCR4-NOT transcription complex subunit 1. It adopts a MIF4G (middle portion of eIF4G) fold.


Pssm-ID: 465112  Cd Length: 183  Bit Score: 309.92  E-value: 8.79e-97
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681   816 QPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNhpphPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR 895
Cdd:pfam16417    4 QYKEIIQDFPQLDSSTDQQFSQEVEKEANSYFQRLYN----GEISIEEFIEMLKQFKSSKNKREQEVFACMITNLFDEYK 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681   896 FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISH 975
Cdd:pfam16417   80 FFPQYPDKELLITGQLFGSIIEHGLVSYKALGIALRYVLEALRKPPGSKMFEFGIKALEQFKSRLKEWPQYCQHLDSIPH 159

                          170       180
                   ....*....|....*....|....
gi 528990681   976 FMQFPHHLQEYIEYGQQSRDPPVK 999
Cdd:pfam16417  160 LREFPPDLVEYIEYGLKQQESPPQ 183
DUF3819 pfam12842
CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819; This is an uncharacterized ...
 1382-1528 7.12e-69

CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819; This is an uncharacterized domain that is found on the CCR4-Not complex component Not1. Not1 is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID.


Pssm-ID: 463726  Cd Length: 143  Bit Score: 228.17  E-value: 7.12e-69
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681  1382 PQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRNLTAGMAMITCREPLLMSIS 1461
Cdd:pfam12842    1 PDLKRLVQAAIERAIREIISPVVERSVTIAVITTEELVLKDFATEPDENKMRKAAHLMVRNLAGSLALVTCKEPLRESIS 80

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528990681  1462 TNLKNSFASALrtasPQQREMMDQAAAQLAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHA 1528
Cdd:pfam12842   81 NNLRSLLSNLL----PNVNEQPEQAIQLAANDNLDLACAFIEKAAMEKAIPEIDERLAPAYELRRRH 143
NOT1_connector cd20710
Connector domain of NOT1; This NOT1 connector domain is one of several catalytically inactive ...
 1597-1809 2.10e-60

Connector domain of NOT1; This NOT1 connector domain is one of several catalytically inactive subunits of the multisubunit CCR4-NOT complex assembly that plays a central role in post-translational gene regulation in eukaryotes. CCR4-NOT contains the catalytic center formed by two deadenylase subunits CCR4 and CAF1, and the conserved core complex which contains a minimum of four catalytically inactive subunits, NOT1, NOT2, NOT3 and CAF40/NOT9. NOT1 is the largest subunit which functions as a central scaffold for complex assembly in human orthologs. The Chaetomium thermophilum NOT1 connector domain consists of five alpha-helical hairpin repeats of the HEAT type that structurally resemble MIF4G domains, and hence is also called the MIF4G-C domain. However, NOT1 MIF4G-C does not interact with DEAD-box helicases such as DDX6 like MIF4G does. Structural conservation of this domain suggests an important role but its function is as yet unknown.


Pssm-ID: 411008 [Multi-domain]  Cd Length: 202  Bit Score: 206.34  E-value: 2.10e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1597 AWATDDVAQIYDKCITELEQHLHAIPPT-LAMNPQAQALRSLLEVVVLSRNSRDA--IAALGLLQKAVEGLLDATSgada 1673
Cdd:cd20710     1 ALSPDQLLERFDKLLAELERLLAEAPEEhISDLPPDHEIRSLLRQILQLIISSEQrdELALALAQKIVQLLYESSE---- 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681 1674 dlLLRYRECHLLVLKALQDGraygSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMA 1753
Cdd:cd20710    77 --SQLAREVLVALLEKLCDL----SPKVAKEVTSWLIYSDDERKFNVPVTVALIRSGLLNLAEYDAQLAKLIENGRNPAA 150

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 528990681 1754 VAFAMQLVKILLVDERSVAhvTEADLFHTIETLMRINAHSRgnAPEGLPQLMEVVR 1809
Cdd:cd20710   151 LEFAAQLLRELLLDDRPVA--LRADFANTLEALAKLAQESP--SPEGLQQLLEKLR 202
CNOT1_HEAT pfam16418
CCR4-NOT transcription complex subunit 1 HEAT repeat; This domain is a HEAT repeat found in ...
 500-656 6.03e-55

CCR4-NOT transcription complex subunit 1 HEAT repeat; This domain is a HEAT repeat found in CCR4-NOT transcription complex subunit 1.


Pssm-ID: 465113  Cd Length: 146  Bit Score: 188.58  E-value: 6.03e-55
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528990681   500 HELISTLMPIFLGNHPNSAIILHYAWHgqgQSPsirQLIMHAMAEWYMRgeqyDQAKLSRILDVAQDLKALSMLLNGTPF 579
Cdd:pfam16418    1 QELIDELFPLFLQGHPNSDLVLHSLWE---VDP---QLLLKRLVDYYAR----DPLNLSRILDVAQELKILDELLNLLPF 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528990681   580 AFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEkDQPKSAQLPPETLATMLACLQ 656
Cdd:pfam16418   71 NFALDLAALASRRGYLDLEKWLQDKLKEHGEPFAQALLDFLEIKAKLELEVQANQ-PEPSSVPLSVETVHTLLKVLQ 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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