Prp40p [Saccharomyces cerevisiae S288C]
PRP40 family protein( domain architecture ID 11473808)
PRP40 family protein similar to Saccharomyces cerevisiae pre-mRNA-processing protein PRP40 required for pre-spliceosome formation, which is the first step of pre-mRNA splicing
List of domain hits
Name | Accession | Description | Interval | E-value | |||||||||
PRP40 | COG5104 | Splicing factor [RNA processing and modification]; |
1-583 | 0e+00 | |||||||||
Splicing factor [RNA processing and modification]; : Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 846.29 E-value: 0e+00
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Name | Accession | Description | Interval | E-value | |||||||||
PRP40 | COG5104 | Splicing factor [RNA processing and modification]; |
1-583 | 0e+00 | |||||||||
Splicing factor [RNA processing and modification]; Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 846.29 E-value: 0e+00
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WW | pfam00397 | WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
4-29 | 9.32e-10 | |||||||||
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Pssm-ID: 425661 [Multi-domain] Cd Length: 30 Bit Score: 53.66 E-value: 9.32e-10
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
4-31 | 2.47e-09 | |||||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 52.53 E-value: 2.47e-09
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
4-31 | 4.54e-09 | |||||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 51.83 E-value: 4.54e-09
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Name | Accession | Description | Interval | E-value | |||||||||
PRP40 | COG5104 | Splicing factor [RNA processing and modification]; |
1-583 | 0e+00 | |||||||||
Splicing factor [RNA processing and modification]; Pssm-ID: 227435 [Multi-domain] Cd Length: 590 Bit Score: 846.29 E-value: 0e+00
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WW | pfam00397 | WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
4-29 | 9.32e-10 | |||||||||
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Pssm-ID: 425661 [Multi-domain] Cd Length: 30 Bit Score: 53.66 E-value: 9.32e-10
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
134-185 | 2.00e-09 | |||||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 53.23 E-value: 2.00e-09
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
4-31 | 2.47e-09 | |||||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 52.53 E-value: 2.47e-09
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
4-31 | 4.54e-09 | |||||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 51.83 E-value: 4.54e-09
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WW | pfam00397 | WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds ... |
44-70 | 5.16e-09 | |||||||||
WW domain; The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Pssm-ID: 425661 [Multi-domain] Cd Length: 30 Bit Score: 51.74 E-value: 5.16e-09
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
203-256 | 8.36e-09 | |||||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 51.81 E-value: 8.36e-09
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WW | cd00201 | Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; ... |
44-70 | 2.44e-08 | |||||||||
Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs. Pssm-ID: 238122 [Multi-domain] Cd Length: 31 Bit Score: 49.83 E-value: 2.44e-08
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WW | smart00456 | Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds ... |
44-71 | 4.75e-08 | |||||||||
Domain with 2 conserved Trp (W) residues; Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Pssm-ID: 197736 [Multi-domain] Cd Length: 33 Bit Score: 49.14 E-value: 4.75e-08
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
358-410 | 2.33e-07 | |||||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 47.45 E-value: 2.33e-07
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FF | pfam01846 | FF domain; This domain has been predicted to be involved in protein-protein interaction. This ... |
203-254 | 1.94e-06 | |||||||||
FF domain; This domain has been predicted to be involved in protein-protein interaction. This domain was recently shown to bind the hyperphosphorylated C-terminal repeat domain of RNA polymerase II, confirming its role in protein-protein interactions. Pssm-ID: 426471 [Multi-domain] Cd Length: 50 Bit Score: 44.76 E-value: 1.94e-06
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
356-413 | 8.57e-06 | |||||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 43.33 E-value: 8.57e-06
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
494-552 | 1.67e-04 | |||||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 39.48 E-value: 1.67e-04
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FF | smart00441 | Contains two conserved F residues; A novel motif that often accompanies WW domains. Often ... |
133-188 | 6.70e-03 | |||||||||
Contains two conserved F residues; A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues. Pssm-ID: 128718 [Multi-domain] Cd Length: 55 Bit Score: 34.86 E-value: 6.70e-03
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Blast search parameters | ||||
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