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Conserved domains on  [gi|358356396|ref|NP_001240308.1|]
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60S ribosomal protein L15 isoform 1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ribosomal_L15e pfam00827
Ribosomal L15;
2-193 4.72e-122

Ribosomal L15;


:

Pssm-ID: 144426  Cd Length: 192  Bit Score: 346.46  E-value: 4.72e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATY 81
Cdd:pfam00827   1 GAYKYIRELWKKKQSDVMRFLLRVRCWEWRQLPAIVRVERPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPRPKGGRY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   82 GKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREM 161
Cdd:pfam00827  81 GKPKRMGVNKLKPAKSLQSIAEERAGRKCPNLRVLNSYWVGQDGTYKYYEVILVDPFHPAIRNDPRINWICKPVHKHREF 160
                         170       180       190
                  ....*....|....*....|....*....|...
gi 358356396  162 RGLTSAGRKSRGL-GKGHKFHHTIgGSRRAAWR 193
Cdd:pfam00827 161 RGLTSAGRKSRGLrGKGHGTEKTR-PSIRANWK 192
 
Name Accession Description Interval E-value
Ribosomal_L15e pfam00827
Ribosomal L15;
2-193 4.72e-122

Ribosomal L15;


Pssm-ID: 144426  Cd Length: 192  Bit Score: 346.46  E-value: 4.72e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATY 81
Cdd:pfam00827   1 GAYKYIRELWKKKQSDVMRFLLRVRCWEWRQLPAIVRVERPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPRPKGGRY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   82 GKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREM 161
Cdd:pfam00827  81 GKPKRMGVNKLKPAKSLQSIAEERAGRKCPNLRVLNSYWVGQDGTYKYYEVILVDPFHPAIRNDPRINWICKPVHKHREF 160
                         170       180       190
                  ....*....|....*....|....*....|...
gi 358356396  162 RGLTSAGRKSRGL-GKGHKFHHTIgGSRRAAWR 193
Cdd:pfam00827 161 RGLTSAGRKSRGLrGKGHGTEKTR-PSIRANWK 192
PTZ00026 PTZ00026
60S ribosomal protein L15; Provisional
1-204 3.13e-113

60S ribosomal protein L15; Provisional


Pssm-ID: 185402  Cd Length: 204  Bit Score: 324.36  E-value: 3.13e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:PTZ00026   1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396  81 YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:PTZ00026  81 YGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 358356396 161 MRGLTSAGRKSRGL-GKGHKfHHTIGGSRRAAWRRRNTLQLHRYR 204
Cdd:PTZ00026 161 LRGLTSAGRKSRGLrVKGHR-ASKLRPSRRANWKRRNRIVLRRYR 204
RPL15A COG1632
Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; linked to ...
1-204 7.33e-75

Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; linked to 3D-structure


Pssm-ID: 224547  Cd Length: 195  Bit Score: 226.48  E-value: 7.33e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:COG1632    2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRVRRGGRNRKRPKKGR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396  81 ygKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:COG1632   82 --RPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRV 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 358356396 161 MRGLTSAGRKSRGLGKGHKfhhtiggsrRAAWRRRNTLQLHRYR 204
Cdd:COG1632  160 FRGLTSAGKKSRGLRKGGK---------GAEKKRPSTRALQRYR 194
PRK04243 PRK04243
50S ribosomal protein L15e; Validated
1-195 8.44e-62

50S ribosomal protein L15e; Validated


Pssm-ID: 235263  Cd Length: 196  Bit Score: 193.21  E-value: 8.44e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:PRK04243   3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKGGR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396  81 ygKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:PRK04243  83 --RPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRV 160
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 358356396 161 MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRR 195
Cdd:PRK04243 161 FRGLTSAGKKGRGLRKKGKGTEKVRPSIRANERRG 195
 
Name Accession Description Interval E-value
Ribosomal_L15e pfam00827
Ribosomal L15;
2-193 4.72e-122

Ribosomal L15;


Pssm-ID: 144426  Cd Length: 192  Bit Score: 346.46  E-value: 4.72e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396    2 GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATY 81
Cdd:pfam00827   1 GAYKYIRELWKKKQSDVMRFLLRVRCWEWRQLPAIVRVERPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPRPKGGRY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   82 GKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREM 161
Cdd:pfam00827  81 GKPKRMGVNKLKPAKSLQSIAEERAGRKCPNLRVLNSYWVGQDGTYKYYEVILVDPFHPAIRNDPRINWICKPVHKHREF 160
                         170       180       190
                  ....*....|....*....|....*....|...
gi 358356396  162 RGLTSAGRKSRGL-GKGHKFHHTIgGSRRAAWR 193
Cdd:pfam00827 161 RGLTSAGRKSRGLrGKGHGTEKTR-PSIRANWK 192
PTZ00026 PTZ00026
60S ribosomal protein L15; Provisional
1-204 3.13e-113

60S ribosomal protein L15; Provisional


Pssm-ID: 185402  Cd Length: 204  Bit Score: 324.36  E-value: 3.13e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:PTZ00026   1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396  81 YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:PTZ00026  81 YGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRE 160
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 358356396 161 MRGLTSAGRKSRGL-GKGHKfHHTIGGSRRAAWRRRNTLQLHRYR 204
Cdd:PTZ00026 161 LRGLTSAGRKSRGLrVKGHR-ASKLRPSRRANWKRRNRIVLRRYR 204
RPL15A COG1632
Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; linked to ...
1-204 7.33e-75

Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]; linked to 3D-structure


Pssm-ID: 224547  Cd Length: 195  Bit Score: 226.48  E-value: 7.33e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:COG1632    2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRVRRGGRNRKRPKKGR 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396  81 ygKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:COG1632   82 --RPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRV 159
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 358356396 161 MRGLTSAGRKSRGLGKGHKfhhtiggsrRAAWRRRNTLQLHRYR 204
Cdd:COG1632  160 FRGLTSAGKKSRGLRKGGK---------GAEKKRPSTRALQRYR 194
PRK04243 PRK04243
50S ribosomal protein L15e; Validated
1-195 8.44e-62

50S ribosomal protein L15e; Validated


Pssm-ID: 235263  Cd Length: 196  Bit Score: 193.21  E-value: 8.44e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396   1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT 80
Cdd:PRK04243   3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKGGR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 358356396  81 ygKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHRE 160
Cdd:PRK04243  83 --RPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRV 160
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 358356396 161 MRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRR 195
Cdd:PRK04243 161 FRGLTSAGKKGRGLRKKGKGTEKVRPSIRANERRG 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.14
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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