NCBI Conserved Domain Search

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Conserved domains on [gi\|94967430\|ref\|YP_589478.1\|]
response regulator receiver protein [Candidatus Koribacter versatilis Ellin345]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

1e-16

79.52

89.38

2,0,12,40,43,52,61

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
cd00156      13 LRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMP---GMDGLELLRRIRKRGPDIPIIFLTAHGDDEDAVEALK 89

                        90       100
                ....*....|....*....|....
gi 94967430  81 LNVDKFLGKPISMPKLLTTVKEFV 104
cd00156      90 AGADDYLTKPFSPEELLARIRALL 113

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

1e-16

79.93

88.29

2,0,13,40,43,53,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
pfam00072    14 LRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMP---GMDGLELLRRIRRRPPTTPVIVLTAHGDEEDAVEALK 90

                        90       100
                ....*....|....*....|.
gi 94967430  81 LNVDKFLGKPISMPKLLTTVK 101
pfam00072    91 AGANDFLSKPFDPEELVAALR 111

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

7e-11

60.63

76.15

3,0,20,25,25,47,14,42,61,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEV--GHKHFSLVITDLRMesgRDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEG 78
COG0784      21 LKRLLEDLGYEVVEAADGEEEALELlrELPQPDLILLDINM---PGMDGIELLRRLRARGPNIPVILLTAYADEADRERA 97

                        90       100
                ....*....|....*....|..
gi 94967430  79 WRLNVDKFLGKPISMPKLLTTV 100
COG0784      98 LAAGADDYLTKPIFLEEELLAA 119

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

7e-04

37.56

70.91

1,0,15,39

                        10        20        30
                ....*....|....*....|....*....|....*....
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRM 39
smart00448   16 LKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMM 54

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

7e-16

77.26

21.12

2,0,19,40,43,59,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
COG2204      20 LEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMP---GMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALR 96

                        90       100
                ....*....|....*....|.
gi 94967430  81 LNVDKFLGKPISMPKLLTTVK 101
COG2204      97 LGAFDFLEKPFDLDRLLAIVE 117

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

5e-13

67.67

46.72

4,0,15,25,26,40,13,42,53,13,55,67,55

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVgHKHFSLVITDLRMesgRDEDGLGLIRHIR-QHNPGLPVFVLTASGAPETESEGW 79
COG0745      16 LKEYLEEEGYEVDVAADGEEALEAA-REQPDLVLLDLML---PDLDGLELCRRLRaKKGSGPPIIVLTARDDEEDRVLGL 91

                        90       100       110
                ....*....|....*....|....*....|.
gi 94967430  80 RLNVDKFLGKPISMPKLLTTVKEFVGQFYGA 110
COG0745      92 EAGADDYLTKPFSPRELLARLRALLRRNAGA 122

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

8e-12

63.96

45.50

2,5,20,35,43,55,66

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   6 EQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDK 85
PRK10643     21 QTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLP---DEDGLHFLARIRQKKYTLPVLILTARDTLEDRIAGLDVGADD 97

                        90       100
                ....*....|....*....|....
gi 94967430  86 FLGKPISMPKLLTTVKEFVGQFYG 109
PRK10643     98 YLVKPFALEELHARIRALLRRHNN 121

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

7e-10

57.44

21.17

2,0,13,40,43,53,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
TIGR01818    14 LEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMP---GEDGLDLLPQIKKRHPQLPVIVMTAHSDLDTAVAAYQ 90

                        90       100
                ....*....|....*....|.
gi 94967430  81 LNVDKFLGKPISMPKLLTTVK 101
TIGR01818    91 RGAFEYLPKPFDLDEAVTLVE 111

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

7e-10

57.23

28.06

3,0,29,40,43,69,16,59,88,42

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNP---GLPVFVLTASGAPETESE 77
COG3437      30 LRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMP---EMDGAEVLNKLKAMSPstrRIPVILLTAYADSEDRQR 106

                        90       100
                ....*....|....*....|....
gi 94967430  78 GWRLNVDKFLGKPISMPKLLTTVK 101
COG3437     107 ALEAGADDYLSKPISPKELVARVS 130

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

5e-09

54.26

20.63

2,8,28,32,43,60,59

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   9 GFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFLG 88
PRK10365     29 GYNVALANSGRQALEQVREQVFDLVLCDVRMA---EMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLI 105

                        90
                ....*....|....
gi 94967430  89 KPISMPKLLTTVKE 102
PRK10365    106 KPLDFDNLQATLEK 119

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

1e-08

53.39

18.74

2,14,33,26,43,59,63

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430  15 ARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFLGKPISMP 94
COG4753      34 AANGKEALELIQETQPDIVITDINMP---GMDGLDLIKAIKEQSPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKA 110

                        90
                ....*....|..
gi 94967430  95 KLLTTVKEFVGQ 106
COG4753     111 ELEEALKKIIGK 122

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

2e-08

52.30

39.75

3,3,23,34,38,57,4,44,61,57

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   4 FFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLrMESGrdEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNV 83
PRK09468     24 YLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDL-MLPG--EDGLSICRRLRSQNNPTPIIMLTAKGEEVDRIVGLEMGA 100

                        90
                ....*....|....*...
gi 94967430  84 DKFLGKPISMPKLLTTVK 101
PRK09468    101 DDYLPKPFNPRELLARIR 118

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

2e-08

51.94

43.36

2,0,15,40,43,55,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
PRK09836     16 LTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLP---DVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLE 92

                        90       100
                ....*....|....*....|.
gi 94967430  81 LNVDKFLGKPISMPKLLTTVK 101
PRK09836     93 LGADDYLVKPFAFAELLARVR 113

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

5e-08

50.98

40.18

2,11,28,29,43,57,61

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430  12 VRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFLGKPI 91
COG4565      29 VGTAGTLEEAKMIIEEFKPDLILLDIYMP---DGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDYLIKPF 105

                        90
                ....*....|...
gi 94967430  92 SMPKLLTTVKEFV 104
COG4565     106 TFERLQQALTRYR 118

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

2e-07

49.73

7.69

2,8,981,32,43,1013,60

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430    9 GFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFLG 88
PRK09959     982 GYDVDEATDGVQALHKVSMQHYDLLITDVNMP---NMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLNCGMNLCLF 1058

                         90
                 ....*....|....*
gi 94967430   89 KPISMPKLLTTVKEF 103
PRK09959    1059 KPLTLDVLKTHLSQL 1073

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

3e-07

48.41

41.23

2,11,28,29,43,57,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430  12 VRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFLGKPI 91
COG2197      29 VGEASNGEEALDLARELKPDVVLLDLSMP---GMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDA 105

                        90
                ....*....|
gi 94967430  92 SMPKLLTTVK 101
COG2197     106 SPEELVEAIR 115

-1

138211

PRK10840

transcriptional regulator RcsB; Provisional

false

true

false

216

4e-07

48.03

34.72

2,30,50,57,87,110,15

                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94967430  31 SLVITDLRMESGRDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFL---GKPISMPKLLTTVKE 102
PRK10840     51 HVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVlkqGAPTDLPKALAALQK 125

-1

34205

COG4567

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [..

false

true

false

182

6e-07

47.65

45.60

2,4,28,36,43,64,47

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   5 FEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVD 84
COG4567      29 MERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLG---DGSGLAVIEALRERRADMRIVVLTGYASIATAVEAVKLGAC 105


                ....*.
gi 94967430  85 KFLGKP 90
COG4567     106 DYLAKP 111

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

7e-07

47.22

22.07

3,5,152,35,43,187,14,57,203,45

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   6 EQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQH--NPGLPVFVLTASGAPETESEGWRLNV 83
COG3706     153 QVEGFRVVEATDGEEALLQLAELPPDLVLLDANMP---DMDGLELCTRLRQLerTRDIPIILLSSKDDDELVVRAFELGV 229

                        90
                ....*....|....*....
gi 94967430  84 DKFLGKPISMPKLLTTVKE 102
COG3706     230 NDYITKPIEEGELRARLRR 248

-1

137244

PRK09390

fixJ

response regulator FixJ; Provisional

false

true

false

202

2e-06

46.17

45.05

2,7,25,33,43,58,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   8 AGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFL 87
PRK09390     26 AGFEVRLFESAQAFLDALPGLRFGCVVTDVRMP---GIDGIELLRRLKARGSPLPVIVMTGHGDVPLAVEAMKLGAIDFI 102

                        90
                ....*....|....
gi 94967430  88 GKPISMPKLLTTVK 101
PRK09390    103 EKPFEDERLIGAIE 116

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

5e-06

44.43

38.57

4,4,19,36,43,55,25,75,80,8,83,95,10

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   5 FEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTAsgapeteSEGWRLNV- 83
PRK10816     20 LQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLP---DEDGLSLIRRWRSNDVSLPILVLTA-------RESWQDKVe 89

                        90
                ....*....|....*.
gi 94967430  84 ------DKFLGKPISM 93
PRK10816     90 vlsagaDDYVTKPFHI 105

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

8e-06

43.68

20.35

2,0,19,40,43,59,53

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
PRK11361     20 LSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMP---EMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALR 96

                        90
                ....*....|....*.
gi 94967430  81 LNVDKFLGKPISMPKL 96
PRK11361     97 CGAFDYVIKPFDLDEL 112

-1

137827

PRK10336

DNA-binding transcriptional regulator QseB; Provisional

false

true

false

219

2e-05

42.23

37.44

2,8,23,33,44,56,49

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   9 GFAVRIARTAAEAKEEVGHKHFSLVITDLRMESgrdEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFLG 88
PRK10336     24 GFSVDWFTQGRQGKEALYSAPYDAVILDLTLPG---MDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLC 100


                ....*
gi 94967430  89 KPISM 93
PRK10336    101 KPFAL 105

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

2e-05

42.15

48.51

2,0,19,40,43,59,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
COG4566      20 LAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMP---GMSGLELQDRLAERGIRLPVIFLTGHGDIPMAVQAMK 96

                        90       100
                ....*....|....*....|.
gi 94967430  81 LNVDKFLGKPISMPKLLTTVK 101
COG4566      97 AGAVDFLEKPFSEQDLLDAVE 117

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

3e-05

41.95

41.96

4,3,20,37,43,57,15,61,72,16,77,90,24

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   4 FFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNpglPVFVLTASGAPETESE--GWRL 81
PRK10766     21 YFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLP---GEDGLMLTRELRSRS---TVGIILVTGRTDSIDRivGLEM 94

                        90       100
                ....*....|....*....|
gi 94967430  82 NVDKFLGKPISMPKLLTTVK 101
PRK10766     95 GADDYVTKPFELRELLVRVK 114

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

false

true

false

225

1e-04

40.21

41.33

3,4,20,38,45,58,14,60,72,41

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   5 FEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMESGrdeDGLGLIRHIRQHNPgLPVFVLTASGAPETESEGWRLNVD 84
PRK10529     21 LEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDG---DGIEFIRDLRQWSA-IPVIVLSARSEESDKIAALDAGAD 96

                        90
                ....*....|....*..
gi 94967430  85 KFLGKPISMPKLLTTVK 101
PRK10529     97 DYLSKPFGIGELQARLR 113

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

2e-04

38.85

42.92

3,3,20,39,45,59,10,55,71,46

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   4 FFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMESGrdeDGLGLIRHIR--QHNPGLPVFVLTASGAPETESEGWRL 81
TIGR02154    21 NLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGT---SGIELCRRLRrrPETRAIPIIMLTARGEEEDRVRGLET 97

                        90       100
                ....*....|....*....|
gi 94967430  82 NVDKFLGKPISMPKLLTTVK 101
TIGR02154    98 GADDYITKPFSPRELLARIK 117

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

3e-04

38.63

42.20

3,6,19,31,38,50,6,46,56,55

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   7 QAGFAVRIARTAAEAKEEVGHKHFSLVITDLrMESGRDedGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKF 86
TIGR01387    20 ESGYVVDAASNGRDGLHLALKDDYDLIILDV-MLPGMD--GWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADDY 96

                        90
                ....*....|....*
gi 94967430  87 LGKPISMPKLLTTVK 101
TIGR01387    97 LVKPFSFSELLARVR 111

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

3e-04

38.53

29.08

3,0,22,41,44,63,47,94,110,10

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMESgrdEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWR 80
PRK10693     23 LDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR---MNGLKFVEHLRNRGDQTPVLVISATENMADIAKALR 99

                        90       100
                ....*....|....*....|....
gi 94967430  81 LNVDKFLGKPIsmpKLLTTVKEFV 104
PRK10693    100 LGVEDVLLKPV---KDLNRLREAV 120

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

7e-04

37.50

41.38

4,0,16,28,29,44,12,44,56,15,60,71,41

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKhFSLVITDLRMESgrdEDGLGLIRHIRQHNPgLPVFVLTASGAPETESEGWR 80
PRK10955     17 LKELLEMEGFNVIVAHDGEQALDLLDDS-IDLLLLDVMMPK---KNGIDTLKALRQTHQ-TPVIMLTARGSELDRVLGLE 91

                        90       100
                ....*....|....*....|.
gi 94967430  81 LNVDKFLGKPISMPKLLTTVK 101
PRK10955     92 LGADDYLPKPFNDRELVARIR 112

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

8e-04

37.21

20.68

2,7,25,33,43,58,64

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   8 AGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGAPETESEGWRLNVDKFL 87
PRK10923     26 AGLTCTTFENGNEVLEALASKTPDVLLSDIRMP---GMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL 102

                        90       100
                ....*....|....*....|
gi 94967430  88 GKPISMPKLLTTVKEFVGQF 107
PRK10923    103 PKPFDIDEAVALVERAISHY 122

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

0.001

36.62

41.92

3,4,21,38,45,59,12,57,73,44

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   5 FEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMESGrdeDGLGLIRHIRQH--NPGLPVFVLTASGAPETESEGWRLN 82
PRK10161     22 LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGG---SGIQFIKHLKREsmTRDIPVVMLTARGEEEDRVRGLETG 98

                        90
                ....*....|....*....
gi 94967430  83 VDKFLGKPISMPKLLTTVK 101
PRK10161     99 ADDYITKPFSPKELVARIK 117

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

0.002

35.72

26.32

3,0,15,40,43,55,27,72,82,28

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   1 MSEFFEQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPGLPVFVLTASGapETESEGWR 80
COG3947      16 LSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMP---YMNGIEFAEQVRDIESAVPIIFISSHA--EYADDSFG 90

                        90       100
                ....*....|....*....|
gi 94967430  81 LNVDKFLGKPISMPKLLTTV 100
COG3947      91 MNLDDYLPKPVTPEKLNRAI 110

-1

138611

PRK11517

transcriptional regulatory protein YedW; Provisional

false

true

false

223

0.007

34.14

31.39

4,27,42,10,38,52,6,46,58,14,61,72,40

                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 94967430  28 KHFSLVITDLrMESGRDedGLGLIRHIRQHNPGlPVFVLTASGAPETESEGWRLNVDKFLGKPISMPKLLTTVK 101
PRK11517     43 DDYALIILDI-MLPGMD--GWQILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVR 112

-1

138397

PRK11091

aerobic respiration control sensor protein ArcB; Provisional

false

true

false

779

0.007

33.81

12.71

6,5,545,35,43,580,17,60,599,5,65,605,3,68,611,10,82,621,23

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967430   6 EQAGFAVRIARTAAEAKEEVGHKHFSLVITDLRMEsgrDEDGLGLIRHIRQHNPG--LPVFV-LTA---SGAPETESEGw 79
PRK11091    546 EKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLP---DMTGLDVARELRERYGRedLPPLVaLTAnvlKDKQEYLDAG- 621

                        90       100
                ....*....|....*....|....*.
gi 94967430  80 rlnVDKFLGKPISMPKLLTTVKEFVG 105
PRK11091    622 ---MDDVLSKPLSVPALTAMIKKFWD 644

-1

active site	0	6	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC