NCBI Conserved Domain Search

NewSearch

CDD Home

Conserved domains on [gi\|94967429\|ref\|YP_589477.1\|]
response regulator receiver protein [Candidatus Koribacter versatilis Ellin345]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH

of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

2e-20

93.00

100.00

3,7,0,64,73,64,38,112,102,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   8 LFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVIVLSGN 87
cd00156       1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIR--KRGPDIPIIFLTAH 78

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 94967429  88 AMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
cd00156      79 GDDEDAVEALKAGADDYLTKPFSP-EELLARIRALL 113

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

1e-18

86.87

92.79

2,6,0,65,73,65,38

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVIVLSG 86
pfam00072     1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIR--RRPPTTPVIVLTA 78

                        90       100
                ....*....|....*....|....*
gi 94967429  87 NAMERDRATAQKLGISHYFRKDASP 111
pfam00072    79 HGDEEDAVEALKAGANDFLSKPFDP 103

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

8e-16

77.19

95.38

4,0,1,37,37,39,11,48,51,23,73,74,51

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   1 MSKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATG-EEALQRAQNET-PDMILLDMMLPRLDGMMVLRILRsgEKTRN 78
COG0784       2 LLSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGeEEALELLRELPqPDLILLDINMPGMDGIELLRRLR--ARGPN 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 94967429  79 IPVIVLSGNAMERDRATAQKLGISHYFRKDASPITELVTTMRAMLG 124
COG0784      80 IPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

6e-12

64.52

100.00

1,4,0,55

                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 94967429   5 PKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLP 59
smart00448    1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

1e-06

46.55

82.17

2,2,3,28,30,32,77

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   3 KQPKILFVEDSIFFRKAVTQTLTNEGFE-VQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPV 81
PRK10610      4 KELKFLVVDDFSTMRRIVRNLLKELGFNnVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPV 83

                        90       100
                ....*....|....*....|....*.
gi 94967429  82 IVLSGNAMERDRATAQKLGISHYFRK 107
PRK10610     84 LMVTAEAKKENIIAAAQAGASGYVVK 109

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

5e-19

88.08

50.66

4,4,0,43,48,43,24,73,67,39,113,106,10

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   5 PKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNEtPDMILLDMMLPRLDGMMVLRILRSgEKTRNIPVIVL 84
COG0745       1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRA-KKGSGPPIIVL 78

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 94967429  85 SGNAMERDRATAQKLGISHYFRKDASPItELVTTMRAML 123
COG0745      79 TARDDEEDRVLGLEAGADDYLTKPFSPR-ELLARLRALL 116

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

2e-18

85.84

52.65

2,3,1,108,112,109,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   4 QPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIV 83
TIGR02154     2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIM 81

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 94967429  84 LSGNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
TIGR02154    82 LTARGEEEDRVRGLETGADDYITKPFSP-RELLARIKAVL 120

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

9e-17

80.34

30.56

2,2,12,71,73,84,38

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   3 KQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSG-EKTRNIPV 81
COG3437      13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMsPSTRRIPV 92

                        90       100       110
                ....*....|....*....|....*....|
gi 94967429  82 IVLSGNAMERDRATAQKLGISHYFRKDASP 111
COG3437      93 ILLTAYADSEDRQRALEAGADDYLSKPISP 122

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

3e-16

78.93

49.17

3,1,3,70,74,73,37,112,110,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   2 SKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgeKTRNIPV 81
CHL00148      4 SSKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIR---KESDVPI 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 94967429  82 IVLSGNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
CHL00148     81 IMLTALGDVSDRITGLELGADDYVVKPFSP-KELEARIRSVL 121

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

4e-16

78.42

26.44

2,4,132,103,110,235,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   5 PKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIVL 84
COG3706     133 KKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILL 212

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  85 SGNAMERDRATAQKLGISHYFRKdasPITELVTTMRAM 122
COG3706     213 SSKDDDELVVRAFELGVNDYITK---PIEEGELRARLR 247

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

7e-15

74.18

22.63

2,0,0,72,74,72,33

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   1 MSKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSgeKTRNIP 80
COG2204       1 MMMMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKS--RDPDLP 78

                        90       100
                ....*....|....*....|....*..
gi 94967429  81 VIVLSGNAMERDRATAQKLGISHYFRK 107
COG2204      79 VIVMTGHGDIDTAVEALRLGAFDFLEK 105

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

7e-14

71.10

16.85

1,5,3,77

                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVI 82
PRK09581      4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVV 80

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

2e-13

69.60

55.45

5,5,1,19,24,21,8,32,30,39,73,69,38,112,107,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTL-TNEGFEVQ-TAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVIV 83
COG2197       2 KVLIVDDHPLVREGLRQLLeLEPDLEVVgEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLR--ARGPDIKVVV 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 94967429  84 LSGNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
COG2197      80 LTAHDDPAYVIRALRAGADGYLLKDASP-EELVEAIRAVA 118

-1

138611

PRK11517

transcriptional regulatory protein YedW; Provisional

false

true

false

223

5e-13

68.03

51.12

3,5,1,71,79,72,31,111,103,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTrniPVIVLS 85
PRK11517      2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQT---PVICLT 78

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  86 GNAMERDRATAQKLGISHYFRKDASpITELVTTMRAML 123
PRK11517     79 ARDSVDDRVRGLDSGANDYLVKPFS-FSELLARVRAQL 115

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

1e-12

66.78

48.71

4,5,2,39,45,41,31,79,72,32,112,104,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAqNETPDMILLDMMLPRLDGMMVLRILRSGEKTrniPVIVLS 85
PRK10955      3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDTLKALRQTHQT---PVIMLT 78

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  86 GNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
PRK10955     79 ARGSELDRVLGLELGADDYLPKPFND-RELVARIRAIL 115

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

2e-12

65.90

51.09

2,5,3,106,112,109,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIVLS 85
PRK10161      4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLT 83

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  86 GNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
PRK10161     84 ARGEEEDRVRGLETGADDYITKPFSP-KELVARIKAVM 120

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

3e-12

65.78

51.53

3,2,1,70,74,71,37,112,108,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   3 KQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSgeKTRNIPVI 82
PRK11083      2 QQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRA--FHPALPVI 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 94967429  83 VLSGNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
PRK11083     80 FLTARSDEVDRLVGLEIGADDYVAKPFSP-REVAARVRTIL 119

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

6e-12

64.42

22.90

5,5,3,22,27,26,4,31,31,37,68,69,3,75,72,10

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNE-GFEV-QTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLR-ILRsgekTRNIPVI 82
PRK00742      4 RVLVVDDSAFMRRLLSEILNSDpDIEVvGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRkIMA----LRPTPVV 79


                ...
gi 94967429  83 VLS 85
PRK00742     80 MVS 82

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

7e-12

64.24

50.21

3,0,1,75,77,76,34,112,110,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   1 MSKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKtrNIP 80
PRK09468      2 MQENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNN--PTP 79

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 94967429  81 VIVLSGNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
PRK09468     80 IIMLTAKGEEVDRIVGLEMGADDYLPKPFNP-RELLARIRAVL 121

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

false

true

false

225

1e-11

63.32

50.22

3,6,3,65,74,68,36,111,104,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgeKTRNIPVIVLSG 86
PRK10529      4 VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLR---QWSAIPVIVLSA 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 94967429  87 NAMERDRATAQKLGISHYFRKDASpITELVTTMRAML 123
PRK10529     81 RSEESDKIAALDAGADDYLSKPFG-IGELQARLRVAL 116

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

3e-11

62.41

31.16

4,5,8,59,64,68,12,79,80,28,110,108,5

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGM-MVLRILRSGEKTrniPVIVL 84
PRK10693      9 QILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLkFVEHLRNRGDQT---PVLVI 85

                        90       100       110
                ....*....|....*....|....*....|.
gi 94967429  85 SGNAMERDRATAQKLGISHYFRKdasPITEL 115
PRK10693     86 SATENMADIAKALRLGVEDVLLK---PVKDL 113

-1

138104

PRK10710

DNA-binding transcriptional regulator BaeR; Provisional

false

true

false

240

8e-11

60.53

48.75

3,2,8,69,74,77,37,112,114,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   3 KQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgeKTRNIPVI 82
PRK10710      9 NTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIR---RFSDIPIV 85

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 94967429  83 VLSGNAMERDRATAQKLGISHYFRKDASPiTELVTTMRAML 123
PRK10710     86 MVTAKIEEIDRLLGLEIGADDYICKPYSP-REVVARVKTIL 125

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

8e-11

60.58

52.29

3,6,0,71,79,71,31,111,102,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRniPVIVLSG 86
TIGR01387     1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQT--PVLFLTA 78

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 94967429  87 NAMERDRATAQKLGISHYFRKDASpITELVTTMRAML 123
TIGR01387    79 RDSVADKVKGLDLGADDYLVKPFS-FSELLARVRTLL 114

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

5e-10

58.02

22.53

7,5,2,22,27,26,3,30,30,46,78,76,10,89,86,5,94,92,13,110,105,4

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNE--GFE-VQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTrnIPVI 82
COG4753       3 KVLIVDDEPLIREGLKSLIDWEalGIEvVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSPD--TEFI 80

                        90       100       110
                ....*....|....*....|....*....|...
gi 94967429  83 VLSGNAmERDRA-TAQKLGISHYFRKdasPITE 114
COG4753      81 ILSGYD-EFEYAkKAMKLGVKDYLLK---PVDK 109

-1

34205

COG4567

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [..

false

true

false

182

1e-09

56.90

58.79

2,0,5,71,73,76,36

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   1 MSKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIP 80
COG4567       6 IGPDKSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALR--ERRADMR 83

                        90       100
                ....*....|....*....|....*....
gi 94967429  81 VIVLSGNAMERDRATAQKLGISHYFRKDA 109
COG4567      84 IVVLTGYASIATAVEAVKLGACDYLAKPA 112

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

1e-09

57.16

18.82

2,0,0,74,76,74,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   1 MSKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEktRNIP 80
PRK11361      1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHE--TRTP 78


                ....*...
gi 94967429  81 VIVLSGNA 88
PRK11361     79 VILMTAYA 86

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

2e-09

56.25

51.80

3,5,1,66,73,67,37,111,104,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVIVLS 85
PRK10643      2 KILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIR--QKKYTLPVLILT 79

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  86 GNAMERDRATAQKLGISHYFRKDASpITELVTTMRAML 123
PRK10643     80 ARDTLEDRIAGLDVGADDYLVKPFA-LEELHARIRALL 116

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

3e-09

55.84

48.61

4,6,8,18,24,27,6,30,34,41,73,75,38

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTL-TNEGFE-VQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVIVL 84
PRK10651      9 ILLIDDHPMLRTGVKQLIsMAPDITvVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLR--EKSLSGRIVVF 86

                        90       100
                ....*....|....*....|....*..
gi 94967429  85 SGNAMERDRATAQKLGISHYFRKDASP 111
PRK10651     87 SVSNHEEDVVTALKRGADGYLLKDMEP 113

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

3e-09

55.67

34.29

4,4,1,24,28,27,42,73,69,12,85,83,38

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   5 PKILFVEDSIFFRKAVTQTLTNEG--FEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILrsgEKTRNIPVI 82
COG2201       2 IRVLVVDDSALMRKVISDILNSDPdiEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKI---MRLRPLPVI 78

                        90       100       110       120
                ....*....|....*....|....*....|....*....|...
gi 94967429  83 VLS--GNAMERDRATAQKLGISHYFRKDASPITELVTTMRAML 123
COG2201      79 MVSslTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELL 121

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

4e-09

55.02

50.88

3,5,1,70,77,71,33,111,104,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKtrNIPVIVLS 85
PRK09836      2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANK--GMPILLLT 79

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  86 GNAMERDRATAQKLGISHYFRKDASpITELVTTMRAML 123
PRK09836     80 ALGTIEHRVKGLELGADDYLVKPFA-FAELLARVRTLL 116

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

4e-09

55.05

45.09

2,3,1,69,75,70,32

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   4 QPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSgekTRNIPVIV 83
PRK10766      2 SYHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRS---RSTVGIIL 78

                        90       100
                ....*....|....*....|....
gi 94967429  84 LSGNAMERDRATAQKLGISHYFRK 107
PRK10766     79 VTGRTDSIDRIVGLEMGADDYVTK 102

-1

139916

PRK13856

two-component response regulator VirG; Provisional

false

true

false

241

5e-09

54.82

48.13

4,6,3,57,66,60,25,91,86,19,111,105,14

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGmmvLRILRSGEKTRNIPVIVLSG 86
PRK13856      4 VLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDG---LEIVRSLATKSDVPIIIISG 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 94967429  87 NAMER-DRATAQKLGISHYFRKDASpITELVTTMRAMLGV 125
PRK13856     81 DRLEEaDKVVALELGATDFIAKPFG-TREFLARIRVALRV 119

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

1e-08

53.67

51.57

3,5,1,70,77,71,33,111,104,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKtrNIPVIVLS 85
PRK10816      2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDV--SLPILVLT 79

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  86 GNAMERDRATAQKLGISHYFRKDASpITELVTTMRAML 123
PRK10816     80 ARESWQDKVEVLSAGADDYVTKPFH-IEEVMARMQALM 116

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

3e-08

52.43

16.63

2,6,0,66,74,66,11

                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSgeKTRNIPVIVLS 85
TIGR01818     1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKK--RHPQLPVIVMT 77

-1

138099

PRK10701

DNA-binding transcriptional regulator RstA; Provisional

false

true

false

240

3e-08

52.03

27.92

1,5,2,67

                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRS 72
PRK10701      3 TIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRP 69

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

4e-08

51.82

8.91

2,29,693,78,110,771,4

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429  30 EVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIVLSGNAMERDRATAQKLGISHYFRKda 109
PRK11107    694 HVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAVTAHAMAGERERLLGAGMDDYLAK-- 771


                ....*
gi 94967429 110 sPITE 114
PRK11107    772 -PIDE 775

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

9e-08

50.62

42.57

2,0,0,71,73,71,15

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   1 MSKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIP 80
COG4566       1 MPREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLA--ERGIRLP 78


                ....*...
gi 94967429  81 VIVLSGNA 88
COG4566      79 VIFLTGHG 86

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

3e-07

49.02

29.39

1,30,30,77

                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 94967429  31 VQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIVLSGNAMERDRATAQKLGISHYFRK 107
TIGR02875    31 VGVAHNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLK 107

-1

138454

PRK11173

two-component response regulator; Provisional

false

true

false

237

3e-07

48.52

46.84

4,4,3,67,74,70,37,112,107,3,117,110,4

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   5 PKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgeKTRNIPVIVL 84
PRK11173      4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELR---EQANVALMFL 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 94967429  85 SGNAMERDRATAQKLGISHYFRKDASPiTELvtTMRA 121
PRK11173     81 TGRDNEVDKILGLEIGADDYITKPFNP-REL--TIRA 114

-1

137827

PRK10336

DNA-binding transcriptional regulator QseB; Provisional

false

true

false

219

8e-07

47.62

45.66

2,5,1,66,73,67,34

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVIVLS 85
PRK10336      2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWR--EKGQREPVLILT 79

                        90       100
                ....*....|....*....|..
gi 94967429  86 GNAMERDRATAQKLGISHYFRK 107
PRK10336     80 ARDALAERVEGLRLGADDYLCK 101

-1

138397

PRK11091

aerobic respiration control sensor protein ArcB; Provisional

false

true

false

779

9e-07

47.29

11.30

4,6,527,6,12,536,12,27,548,56,83,605,10

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVED---SIFFRKAVTQTLtneGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIV 83
PRK11091    528 ILLVEDielNVIVARSLLEKL---GNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDLPPLV 604

                        90
                ....*....|.
gi 94967429  84 -LSGNAMERDR 93
PRK11091    605 aLTANVLKDKQ 615

-1

132001

TIGR02956

TMAO_torS

TMAO reductase sytem sensor TorS

false

true

false

968

3e-06

45.54

12.09

4,5,703,73,78,777,29,110,806,4,116,810,10

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRN-IPVIVL 84
TIGR02956   704 RVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQHAFDLALLDINLPDGDGVTLLQQLRAIYGAKNeVKFIAF 783

                        90       100       110       120
                ....*....|....*....|....*....|....*....|..
gi 94967429  85 SGNAMERDRATAQKLGISHYFRKdasPITElvTTMRAMLGVV 126
TIGR02956   784 SAHVFNEDVAQYLAAGFDGFLAK---PVVE--EQLTAMIAVI 820

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

4e-06

45.03

9.19

3,6,826,65,73,891,16,89,909,4

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVIVLSG 86
PRK10841    827 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIR--QLGLTLPVIGVTA 904


                ....*....
gi 94967429  87 NAM--ERDR 93
PRK10841    905 NALaeEKQR 913

-1

137869

PRK10403

transcriptional regulator NarP; Provisional

false

true

false

215

5e-06

44.85

49.30

4,5,7,19,24,27,7,31,35,57,90,92,21

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTL-TNEGFEV-QTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIV 83
PRK10403      8 QVLIVDDHPLMRRGVRQLLeLDPGFEVvAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILT 87

                        90       100
                ....*....|....*....|....*...
gi 94967429  84 LSGNAmeRDRATAQKLGISHYFRKDASP 111
PRK10403     88 VSDAS--SDIFALIDAGADGYLLKDSDP 113

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

6e-06

44.53

17.91

2,2,1,69,73,70,15

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   3 KQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIPVI 82
PRK10923      2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIK--QRHPMLPVI 79


                ....*.
gi 94967429  83 VLSGNA 88
PRK10923     80 IMTAHS 85

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

6e-06

44.34

8.35

2,0,954,71,73,1025,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429    1 MSKQPKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRsgEKTRNIP 80
PRK09959     955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLR--EQNSSLP 1032

                         90       100
                 ....*....|....*....|..
gi 94967429   81 VIVLSGNAMERDRATAQKLGIS 102
PRK09959    1033 IWGLTANAQANEREKGLNCGMN 1054

-1

137324

PRK09483

response regulator; Provisional

false

true

false

216

7e-06

44.33

52.78

6,6,3,21,27,25,4,31,30,37,68,68,4,75,72,36,112,108,9

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNE-GFEV-QTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLR-ILRSgekTRNIPVIV 83
PRK09483      4 VLLVDDHELVRAGIRRILEDIkGIKVvGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRkILRS---TPDVKIIM 80

                        90       100       110
                ....*....|....*....|....*....|....*...
gi 94967429  84 LSGNAMERDRATAQKLGISHYFRKDASPiTELVTTMRA 121
PRK09483     81 LTVHTENPLPAKVMQAGAAGYLSKGAAP-QEVVSAIRS 117

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

1e-05

43.75

21.88

4,4,155,23,28,178,57,86,235,7,93,243,12

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   5 PKILFVEDSIFFRKAVTQTLTNEgFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVIVL 84
PRK09581    156 GRILLVDDDVSQAERIANILKEE-FRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLL 234

                        90       100
                ....*....|....*....|..
gi 94967429  85 SgNAMERDR-ATAQKLGISHYF 105
PRK09581    235 V-DEDEDPRlVKALELGVNDYL 255

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

2e-05

43.07

19.12

3,5,2,21,26,24,5,31,30,37

                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 94967429   6 KILFVEDSIFFRKAVTQTLTN-EGFEV-QTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLR 68
PRK12555      3 NVGIVDDSALAREALRRIIARrPDHRVlGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLR 67

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

3e-05

42.12

45.54

4,5,1,21,26,23,4,30,28,42,74,70,33

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTN-EGFE-VQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSgeKTRNIPVIV 83
COG4565       2 NVLIIEDDPMVAEIHRRYVKQiPGFSvVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRS--QHYPVDVIV 79

                        90       100
                ....*....|....*....|....
gi 94967429  84 LSGNAMERDRATAQKLGISHYFRK 107
COG4565      80 ITAASDMETIKEALRYGVVDYLIK 103

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

5e-05

41.44

18.62

2,16,0,60,80,60,21

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429  17 RKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTrnipVIVLSGNAMERDRATA 96
COG3706       1 VKLLEAKLPLEYKEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEPAT----VVMVTALDDSAPRVRG 76


                ....*
gi 94967429  97 QKLGI 101
COG3706      77 LKAGA 81

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

2e-04

39.18

22.71

2,4,0,71,77,71,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   5 PKILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKtrNIPVIVL 84
COG3947       1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIES--AVPIIFI 78


                ....
gi 94967429  85 SGNA 88
COG3947      79 SSHA 82

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

0.002

36.54

22.45

2,6,7,70,78,77,29

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTrnIPVIVLSG 86
PRK10365      8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPA--IPVLIMTA 85

                        90       100
                ....*....|....*....|.
gi 94967429  87 NAMERDRATAQKLGISHYFRK 107
PRK10365     86 YSSVETAVEALKTGALDYLIK 106

-1

131961

TIGR02915

PEP_resp_reg

putative PEP-CTERM system response regulator

false

true

false

445

0.002

36.27

26.07

5,6,0,18,26,18,33,59,56,9,68,66,9,80,75,41

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   7 ILFVEDSIFFRKAVTQTLtnEGFEVQTAATGEEALQRAQNETPDMILLDMMLP-----RLDGMMVLR-ILRSGEKTRnip 80
TIGR02915     1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHEPAVVTLDLGLPpdadgASEGLAALQqILAIAPDTK--- 75

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 94967429  81 VIVLSGNAMERDRATAQKLGISHYFRKDASPITELVTTMRA 121
TIGR02915    76 VIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRA 116

-1

137611

PRK09958

DNA-binding transcriptional activator EvgA; Provisional

false

true

false

204

0.002

36.03

37.25

2,7,3,29,36,33,46

                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 94967429   8 LFVEDSIFFRKAVTQTLTNEGFEVQTAAT-GEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKTRNIPVI 82
PRK09958      4 IIIDDHPLAIAAIRNLLIKNDIEILAELTeGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV 79

-1

138589

PRK11466

hybrid sensory histidine kinase TorS; Provisional

false

true

false

912

0.003

35.39

7.46

2,5,682,44,49,727,23

                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFEVQTAATGEEALQRAQNETP-DMILLDMMLPRLDGMMVLRILRS 72
PRK11466    683 RLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPfAAALVDFDLPDYDGITLARQLAQ 750

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

0.003

35.33

31.97

3,5,2,25,30,29,45,78,74,6

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEGFE--VQTAATGEEALQRAQNETPDMILLDMMLPRLDGMMVLRILRSGEKtrnIPVIV 83
COG3279       3 KVLIVDDEPLAREELRRILNEIPDIeiVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDP---RPAIV 79


                .
gi 94967429  84 L 84
COG3279      80 F 80

-1

138717

PRK11697

putative two-component response-regulatory protein YehT; Provisional

false

true

false

239

0.004

35.24

25.52

3,5,2,23,28,26,2,30,29,34

                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 94967429   6 KILFVEDSIFFRKAVTQTLTNEG-FE-VQTAATGEEALQRAQNETPDMILLDMMLPRLDGM 64
PRK11697      3 KVLIVDDEPLAREELRELLQEEGdIEiVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGL 63

-1

active site	0	8	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC