NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|8050588|gb|AAF71714|]
View 

beta-lactamase [Cloning vector pUC21]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PRK15442 PRK15442
beta-lactamase TEM; Provisional
3-286 0e+00

beta-lactamase TEM; Provisional


:

Pssm-ID: 185339 [Multi-domain]  Cd Length: 284  Bit Score: 605.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588     3 IQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRI 82
Cdd:PRK15442   1 IQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    83 DAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 162
Cdd:PRK15442  81 DAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588   163 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 242
Cdd:PRK15442 161 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 240
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 8050588   243 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
Cdd:PRK15442 241 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 284
 
Name Accession Description Interval E-value
PRK15442 PRK15442
beta-lactamase TEM; Provisional
3-286 0e+00

beta-lactamase TEM; Provisional


Pssm-ID: 185339 [Multi-domain]  Cd Length: 284  Bit Score: 605.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588     3 IQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRI 82
Cdd:PRK15442   1 IQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    83 DAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 162
Cdd:PRK15442  81 DAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588   163 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 242
Cdd:PRK15442 161 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 240
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 8050588   243 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
Cdd:PRK15442 241 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 284
PenP COG2367
Beta-lactamase class A [Defense mechanisms];
37-282 9.49e-47

Beta-lactamase class A [Defense mechanisms];


Pssm-ID: 225242 [Multi-domain]  Cd Length: 329  Bit Score: 159.52  E-value: 9.49e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588   37 QLGARVGYIELDLNSGkILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKH-LTDGM 115
Cdd:COG2367  60 ATDGRVGVYVLDVDTG-ELIAINGDERFPAASTIKLPVLAALLEQVDAGRIGLDERLTITKDDRVGGSGVLQYLvGGGGS 138
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588  116 TVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW-EPELNEAI----PNDERDTTMPVAMATTLRK 190
Cdd:COG2367 139 TLRELLTKMITASDNTATNMLIERLGGPKALNEWLRSIGLPNTRLRRPyMPDLNRFNgpydPRDSGKTTTPADDAATLLQ 218
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588  191 LLTGELLTLASR-----QQLIDWMEADKVAGP--LLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTG 263
Cdd:COG2367 219 LILGAVLSPSDRatglsGYLAEWALLANTIGRdwLLRAGLPFDWAIAHKTGTGLGGTANDVGIIWAPVPKPIVAAVIGER 298
                       250       260
                ....*....|....*....|..
gi 8050588  264 SQATMDER---NRQIAEIGASL 282
Cdd:COG2367 299 PGKKADATavyTALPAELAREV 320
Beta-lactamase2 pfam13354
Beta-lactamase enzyme family; This family is closely related to Beta-lactamase, pfam00144, the ...
49-253 6.45e-40

Beta-lactamase enzyme family; This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and pfam00768 D-alanyl-D-alanine carboxypeptidase.


Pssm-ID: 433139 [Multi-domain]  Cd Length: 202  Bit Score: 137.77  E-value: 6.45e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588     49 LNSGKILeSFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 128
Cdd:pfam13354   1 LDTGEEL-GVNGDRSFPAASTIKVPILVALFEAVDEGKLSLDERLTVTAEDIVGGSGILQYLPGGELSLRDLLTLMIAVS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    129 DNTAANLLLTTIgGPKELTAFLHNMGDHVTRLDRWEPELnEAIPNDERDTTMPVAMATTLRKLLTGELLtlaSRQQLIDW 208
Cdd:pfam13354  80 DNTATNLLIDRL-GLDAVNARLKSLGLKDTRLRRKLPDL-EAAPKGKENTTTARDMAKLLEALYRGELL---SPESLLDI 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 8050588    209 MeADKVAGPLLRSALPAGWFIADKSGaGERGSRGIIAALGPDGKP 253
Cdd:pfam13354 155 L-RNQTFRDRLPAGLPEGARVAHKTG-DLDGVRHDVGIVYTDGRP 197
 
Name Accession Description Interval E-value
PRK15442 PRK15442
beta-lactamase TEM; Provisional
3-286 0e+00

beta-lactamase TEM; Provisional


Pssm-ID: 185339 [Multi-domain]  Cd Length: 284  Bit Score: 605.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588     3 IQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRI 82
Cdd:PRK15442   1 IQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRV 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    83 DAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 162
Cdd:PRK15442  81 DAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588   163 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 242
Cdd:PRK15442 161 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 240
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 8050588   243 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 286
Cdd:PRK15442 241 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW 284
PenP COG2367
Beta-lactamase class A [Defense mechanisms];
37-282 9.49e-47

Beta-lactamase class A [Defense mechanisms];


Pssm-ID: 225242 [Multi-domain]  Cd Length: 329  Bit Score: 159.52  E-value: 9.49e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588   37 QLGARVGYIELDLNSGkILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKH-LTDGM 115
Cdd:COG2367  60 ATDGRVGVYVLDVDTG-ELIAINGDERFPAASTIKLPVLAALLEQVDAGRIGLDERLTITKDDRVGGSGVLQYLvGGGGS 138
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588  116 TVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW-EPELNEAI----PNDERDTTMPVAMATTLRK 190
Cdd:COG2367 139 TLRELLTKMITASDNTATNMLIERLGGPKALNEWLRSIGLPNTRLRRPyMPDLNRFNgpydPRDSGKTTTPADDAATLLQ 218
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588  191 LLTGELLTLASR-----QQLIDWMEADKVAGP--LLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTG 263
Cdd:COG2367 219 LILGAVLSPSDRatglsGYLAEWALLANTIGRdwLLRAGLPFDWAIAHKTGTGLGGTANDVGIIWAPVPKPIVAAVIGER 298
                       250       260
                ....*....|....*....|..
gi 8050588  264 SQATMDER---NRQIAEIGASL 282
Cdd:COG2367 299 PGKKADATavyTALPAELAREV 320
Beta-lactamase2 pfam13354
Beta-lactamase enzyme family; This family is closely related to Beta-lactamase, pfam00144, the ...
49-253 6.45e-40

Beta-lactamase enzyme family; This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and pfam00768 D-alanyl-D-alanine carboxypeptidase.


Pssm-ID: 433139 [Multi-domain]  Cd Length: 202  Bit Score: 137.77  E-value: 6.45e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588     49 LNSGKILeSFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 128
Cdd:pfam13354   1 LDTGEEL-GVNGDRSFPAASTIKVPILVALFEAVDEGKLSLDERLTVTAEDIVGGSGILQYLPGGELSLRDLLTLMIAVS 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    129 DNTAANLLLTTIgGPKELTAFLHNMGDHVTRLDRWEPELnEAIPNDERDTTMPVAMATTLRKLLTGELLtlaSRQQLIDW 208
Cdd:pfam13354  80 DNTATNLLIDRL-GLDAVNARLKSLGLKDTRLRRKLPDL-EAAPKGKENTTTARDMAKLLEALYRGELL---SPESLLDI 154
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 8050588    209 MeADKVAGPLLRSALPAGWFIADKSGaGERGSRGIIAALGPDGKP 253
Cdd:pfam13354 155 L-RNQTFRDRLPAGLPEGARVAHKTG-DLDGVRHDVGIVYTDGRP 197
Beta-lactamase pfam00144
Beta-lactamase; This family appears to be distantly related to pfam00905 and pfam00768 ...
59-280 1.44e-22

Beta-lactamase; This family appears to be distantly related to pfam00905 and pfam00768 D-alanyl-D-alanine carboxypeptidase.


Pssm-ID: 395092 [Multi-domain]  Cd Length: 327  Bit Score: 94.88  E-value: 1.44e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588     59 RPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHysqndlvEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLT 138
Cdd:pfam00144  45 TADTLFRIASVTKTFTAAAVLQLVERGKLDLDDPVS-------KYLPEFAGPGKGGITLRDLLTHTSGLPPLFAPDDLEE 117
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    139 TIGGPKELTAFL---------------HN---------------------MGDHVTR-LDRWEPELNEAIPNDERDTTMP 181
Cdd:pfam00144 118 AAADAAELVRALaalppvwppgtrwgySNtaygllgellervtgqsyeelLGDRILRpLGMTDTELGVPEPGDPRDAAGY 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    182 ----------------------VAMATTLRKLLT----GELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGA 235
Cdd:pfam00144 198 tgegppvrvppgplpagaygglKSTARDLARFLLallgGLLLSAAALAQLTDWLRGGTTGVGGIRAGLGLGWVLADKTGA 277
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 8050588    236 GER-----GSRGIIAALGPDGKpsRIVVIYTTGSQATMD--ERNRQIAEIGA 280
Cdd:pfam00144 278 GPGlfghtGGYGTYLAVDPDIG--LVVVVLSNRLGPNPDaaEDARLIALAAA 327
DacC COG1686
D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];
7-153 5.50e-06

D-alanyl-D-alanine carboxypeptidase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 224600 [Multi-domain]  Cd Length: 389  Bit Score: 46.98  E-value: 5.50e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 8050588    7 RVALIPFFAAFCLPVFAHPETLVKVkDAEdqlgarvGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQ 86
Cdd:COG1686  12 LALVSLFLAAALASAQTVAAAAPEI-AAK-------AAIVIDADSGKVLYSKNADARRPPASLTKLMTAYVVLEALKAGK 83
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 8050588   87 EQLGRRIHYSQNDLVEYSPVTEKhLTDG--MTVRELCSAAITMSDNTAANLLLTTIGGPKEltAFLHNM 153
Cdd:COG1686  84 IKLDDKVTISENAWAKGGGSKMF-LKPGetVTVRDLLKGLLVQSANDAAVALAEHLAGSED--AFVAKM 149
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH