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Conserved domains on  [gi|7839167|ref|NP_058155|]
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gag protein [Saccharomyces cerevisiae S288c]

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List of domain hits

Name Accession Description Interval E-value
TYA pfam01021
TYA transposon protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion ...
17-114 4.13e-54

TYA transposon protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. TYA a is cleaved to form 46kd protein which can form mature virion like particles.


:

Pssm-ID: 144563  Cd Length: 98  Bit Score: 177.55  E-value: 4.13e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     17 ACASVTSKEVHTNQDPLDVSASKTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQA 96
Cdd:pfam01021   1 ACASVTSKEVHTNQDPLDVSASKLPEYDKDSTKANSQQETTPGSSAVPENHHHASPQTAQVPLPQNGPYQQQCMMTPNQA 80
                          90
                  ....*....|....*...
gi 7839167     97 NPSGWSFYGHPSMIPYTP 114
Cdd:pfam01021  81 NPSGWSVYGHPSMMPYTP 98
 
Name Accession Description Interval E-value
TYA pfam01021
TYA transposon protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion ...
17-114 4.13e-54

TYA transposon protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. TYA a is cleaved to form 46kd protein which can form mature virion like particles.


Pssm-ID: 144563  Cd Length: 98  Bit Score: 177.55  E-value: 4.13e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     17 ACASVTSKEVHTNQDPLDVSASKTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQA 96
Cdd:pfam01021   1 ACASVTSKEVHTNQDPLDVSASKLPEYDKDSTKANSQQETTPGSSAVPENHHHASPQTAQVPLPQNGPYQQQCMMTPNQA 80
                          90
                  ....*....|....*...
gi 7839167     97 NPSGWSFYGHPSMIPYTP 114
Cdd:pfam01021  81 NPSGWSVYGHPSMMPYTP 98
PHA03247 PHA03247
large tegument protein UL36; Provisional
47-175 3.84e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 3.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     47 STKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANP-SGWSFYGHPSMIPYTPY--QMSPMYFP 123
Cdd:PHA03247 2894 STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPtTDPAGAGEPSGAVPQPWlgALVPGRVA 2973
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 7839167    124 PgPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPML 175
Cdd:PHA03247 2974 V-PRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSL 3024
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
4-171 2.11e-03

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 255446 [Multi-domain]  Cd Length: 768  Bit Score: 39.22  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167      4 QQLSQHSPISHGSACASVTSKEVHTNQDPLDVSASKTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNG 83
Cdd:pfam09606 369 HQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSV 448
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     84 PypqqcmmtqNQANPSGwsfyghPSMIPYTPYQMSPMyfpPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMT 163
Cdd:pfam09606 449 S---------GGMIPSP------PALMPSPSPQMSQS---PASQRTIQQDMVSPGGPLNTPGQSSVNSPANPQEEQLYRE 510
                         170
                  ....*....|.
gi 7839167    164 STK---KYVRP 171
Cdd:pfam09606 511 KYKqlsKYIEP 521
 
Name Accession Description Interval E-value
TYA pfam01021
TYA transposon protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion ...
17-114 4.13e-54

TYA transposon protein; Ty are yeast transposons. A 5.7kb transcript codes for p3 a fusion protein of TYA and TYB. The TYA protein is analogous to the gag protein of retroviruses. TYA a is cleaved to form 46kd protein which can form mature virion like particles.


Pssm-ID: 144563  Cd Length: 98  Bit Score: 177.55  E-value: 4.13e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     17 ACASVTSKEVHTNQDPLDVSASKTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQA 96
Cdd:pfam01021   1 ACASVTSKEVHTNQDPLDVSASKLPEYDKDSTKANSQQETTPGSSAVPENHHHASPQTAQVPLPQNGPYQQQCMMTPNQA 80
                          90
                  ....*....|....*...
gi 7839167     97 NPSGWSFYGHPSMIPYTP 114
Cdd:pfam01021  81 NPSGWSVYGHPSMMPYTP 98
PHA03247 PHA03247
large tegument protein UL36; Provisional
47-175 3.84e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 3.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     47 STKANSQQTTTPASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQANP-SGWSFYGHPSMIPYTPY--QMSPMYFP 123
Cdd:PHA03247 2894 STESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPtTDPAGAGEPSGAVPQPWlgALVPGRVA 2973
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 7839167    124 PgPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMTSTKKYVRPPPML 175
Cdd:PHA03247 2974 V-PRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSL 3024
PHA03247 PHA03247
large tegument protein UL36; Provisional
56-149 1.11e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     56 TTPASSAVPENPHHASP--QPASVPPPQNGPYPQQCMMTQNQANPSGWSFYGHPSMI----PYTPYQMSPMYFPPGPQSQ 129
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPpaAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVlapaAALPPAASPAGPLPPPTSA 2834
                          90       100
                  ....*....|....*....|
gi 7839167    130 FPQYPSSVGTPLSTPSPESG 149
Cdd:PHA03247 2835 QPTAPPPPPGPPPPSLPLGG 2854
Med15 pfam09606
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ...
4-171 2.11e-03

ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.


Pssm-ID: 255446 [Multi-domain]  Cd Length: 768  Bit Score: 39.22  E-value: 2.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167      4 QQLSQHSPISHGSACASVTSKEVHTNQDPLDVSASKTEECEKASTKANSQQTTTPASSAVPENPHHASPQPASVPPPQNG 83
Cdd:pfam09606 369 HQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSV 448
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     84 PypqqcmmtqNQANPSGwsfyghPSMIPYTPYQMSPMyfpPGPQSQFPQYPSSVGTPLSTPSPESGNTFTDSSSADSDMT 163
Cdd:pfam09606 449 S---------GGMIPSP------PALMPSPSPQMSQS---PASQRTIQQDMVSPGGPLNTPGQSSVNSPANPQEEQLYRE 510
                         170
                  ....*....|.
gi 7839167    164 STK---KYVRP 171
Cdd:pfam09606 511 KYKqlsKYIEP 521
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
53-132 2.55e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 255543 [Multi-domain]  Cd Length: 806  Bit Score: 38.99  E-value: 2.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     53 QQTTTPASSAVPENPHHASPQPASvpPPQNGPYPQQCMMTQNQA---NPSGWSFYGHPSMIPYTPYQMSPMYFPPGPQSQ 129
Cdd:pfam09770 161 AQLQQRQQAPQLPQPPQQVLPQGM--PPRQAAFPQQGPPEQPPGypqPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238

                  ...
gi 7839167    130 FPQ 132
Cdd:pfam09770 239 QPP 241
DUF605 pfam04652
Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ...
58-170 4.54e-03

Vta1 like; Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region.


Pssm-ID: 252721 [Multi-domain]  Cd Length: 312  Bit Score: 37.35  E-value: 4.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167     58 PASSAVPENPHHASPQPASVPPPQNGPYPQQCMMTqnqanPSGWSFYGH-PSMIPYTPYQMSPmyfppgPQSQFPQYPSS 136
Cdd:pfam04652 176 PASASPSDPPSSSPGEPSFPSPPEGPDSPSDSSLP-----PAPSSFQSDtPPSSPEEPTNPSP------PPSPFAPSPPP 244
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 7839167    137 VGTPLSTPSPESGNTFTDSSSA--------DSDMTSTKKYVR 170
Cdd:pfam04652 245 QQQVPPLSTAKPSPPHTSATPApigpitpdDDAIAKAQKHAK 286
PHA03369 PHA03369
capsid maturational protease; Provisional
44-142 6.09e-03

capsid maturational protease; Provisional


Pssm-ID: 223061 [Multi-domain]  Cd Length: 663  Bit Score: 37.67  E-value: 6.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7839167    44 EKASTKANSQQTTTPASS---AVPENPHHASPQPASVPPPQNGPYPQQCMMTQNQAN------PSGWSFYGHPSMI-PYT 113
Cdd:PHA03369 341 LKAHNEILKTASLTAPSRvlaAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARspmtayPPVPQFCGDPGLVsPYN 420
                         90       100
                 ....*....|....*....|....*....
gi 7839167   114 PYQMSPMYFPPGPQSQFPQYPSSVGTPLS 142
Cdd:PHA03369 421 PQSPGTSYGPEPVGPVPPQPTNPYVMPIS 449
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.11
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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