NCBI Conserved Domain Search

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Conserved domains on [gi\|730273\|sp\|P39048.1\|PATA_ANASP]
RecName: Full=Protein patA; AltName: Full=PAT-1

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List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

6e-21

96.85

100.00

2,263,0,66,331,66,47

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 264 FCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHsyFKNTPVIMVTEK 343
cd00156     1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTAH 78

                      90       100       110
              ....*....|....*....|....*....|....*
gi 730273 344 AGLVDRARAKIVRASGHLTKPFNQGDLLKVIFKHI 378
cd00156    79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

8e-24

106.51

99.10

4,262,0,23,286,23,18,304,42,27,333,69,41

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDDQIFaVIGVTDSLKALMEILCTK-PDIILINVDMPDLDGYELCSLLRKHSYfkNTPVIMVT 341
pfam00072   1 VLIVDDDPLIRELLRQLLEKEGY-VVAEADDGEEALELLKEKrPDLILLDIRMPGMDGLELLRRIRRRPP--TTPVIVLT 77

                      90       100       110
              ....*....|....*....|....*....|...
gi 730273 342 EKAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
pfam00072  78 AHGDEEDAVEALKAGANDFLSKPFDPEELVAAL 110

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

6e-17

83.74

90.00

3,261,6,42,303,50,26,331,76,47

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 262 TIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCT--KPDIILINVDMPDLDGYELCSLLRKHsyFKNTPVIM 339
COG0784     7 RVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRElpQPDLILLDINMPGMDGIELLRRLRAR--GPNIPVIL 84

                      90       100       110
              ....*....|....*....|....*....|....*....
gi 730273 340 VTEKAGLVDRARAKIVRASGHLTKPFNQGDLLKVIFKHI 378
COG0784    85 LTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRL 123

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

7e-07

49.89

100.00

1,260,0,55

                       10        20        30        40        50
               ....*....|....*....|....*....|....*....|....*....|....*
gi 730273  261 YTIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMP 315
smart00448   1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

3e-06

48.09

82.95

3,275,20,10,285,31,85,370,119,8

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 276 IKNFLDDQIF-AVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMVTEKAGLVDRARAKI 354
PRK10610   21 VRNLLKELGFnNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQ 100

                      90       100
              ....*....|....*....|....*..
gi 730273 355 VRASGHLTKPFNQGDL---LKVIFKHI 378
PRK10610  101 AGASGYVVKPFTAATLeekLNKIFEKL 127

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

3e-15

78.04

29.20

2,241,116,19,263,135,108

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 242 NTVNHGYSQTSATSTDKKIytiFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYE 321
COG3706   117 TGGELGVSPLLPEDAPKKI---LVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLE 193

                      90       100       110       120       130
              ....*....|....*....|....*....|....*....|....*....|
gi 730273 322 LCSLLRKHSYFKNTPVIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDLL 371
COG3706   194 LCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELR 243

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

5e-14

73.83

48.03

3,262,2,35,298,37,32,331,69,43

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALmEILCTKPDIILINVDMPDLDGYELCSLLRKHSyFKNTPVIMVTE 342
COG0745     3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEAL-EAAREQPDLVLLDLMLPDLDGLELCRRLRAKK-GSGPPIIVLTA 80

                      90       100       110
              ....*....|....*....|....*....|..
gi 730273 343 KAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
COG0745    81 RDDEEDRVLGLEAGADDYLTKPFSPRELLARL 112

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

3e-10

61.12

54.03

4,260,0,24,284,25,18,302,44,27,331,71,43

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 261 YTIFCIDENPIVLNNIKNFLDDQI-FAVIGVTDSLKALMEILC-TKPDIILINVDMPDLDGYELCSLLRKHsyFKNTPVI 338
COG2197     1 IKVLIVDDHPLVREGLRQLLELEPdLEVVGEASNGEEALDLAReLKPDVVLLDLSMPGMDGLEALKQLRAR--GPDIKVV 78

                      90       100       110
              ....*....|....*....|....*....|....*.
gi 730273 339 MVTEKAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
COG2197    79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAI 114

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

4e-10

61.08

34.72

2,255,9,75,330,85,49

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 256 TDKKIYTIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHS-YFKN 334
COG3437    10 EPDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSpSTRR 89

                      90       100       110       120
              ....*....|....*....|....*....|....*....|....*
gi 730273 335 TPVIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDLLKVIFKHIT 379
COG3437    90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

1e-09

59.26

48.67

1,261,3,110

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 262 TIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMVT 341
TIGR02154   4 RILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLT 83

                      90       100       110
              ....*....|....*....|....*....|
gi 730273 342 EKAGLVDRARAKIVRASGHLTKPFNQGDLL 371
TIGR02154  84 ARGEEEDRVRGLETGADDYITKPFSPRELL 113

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

2e-09

59.16

17.94

1,284,26,82

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 285 FAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMVTEKAGLVDRARAKIVRASGHLTKP 364
PRK09581   27 YTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVMVTALDDPSDRVRGLEAGADDFLTKP 106


              ..
gi 730273 365 FN 366
PRK09581  107 IN 108

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

2e-09

58.38

23.92

2,261,5,69,332,74,42

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 262 TIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVT 341
COG2204     6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRD--PDLPVIVMT 83

                      90       100       110
              ....*....|....*....|....*....|...
gi 730273 342 EKAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
COG2204    84 GHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIV 116

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

3e-09

57.98

12.83

5,261,669,36,298,705,7,305,713,39,346,752,11,357,765,22

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 262 TIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALmEILCTKP-DIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMV 340
PRK11107  670 TVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAV-ELAKQRPfDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAV 748

                      90       100       110       120
              ....*....|....*....|....*....|....*....|.
gi 730273 341 TEKAglVDRARAKIVRA--SGHLTKPFNQGDLLKVIFKHIT 379
PRK11107  749 TAHA--MAGERERLLGAgmDDYLAKPIDEAALKQVLLRWKP 787

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

4e-09

57.36

42.50

4,260,6,37,299,43,5,304,50,26,333,76,32

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 261 YTIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALmeILCTK--PDIILINVDMPDLDGYELCSLLRKHSyfkNTPVI 338
CHL00148    7 EKILVVDDEASIRRILETRLSIIGYEVITASDGEEAL--KLFHQeqPDLVILDVMMPKLDGYGVCQEIRKES---DVPII 81

                      90       100
              ....*....|....*....|....*..
gi 730273 339 MVTEKAGLVDRARAKIVRASGHLTKPF 365
CHL00148   82 MLTALGDVSDRITGLELGADDYVVKPF 108

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

6e-08

53.77

23.85

4,261,156,20,282,176,60,347,236,10,357,251,14

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 262 TIFCIDENPIVLNNIKNFLDdQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMVT 341
PRK09581  157 RILLVDDDVSQAERIANILK-EEFRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLLV 235

                      90       100       110
              ....*....|....*....|....*....|....*
gi 730273 342 EkaglvDRARAKIVRA-----SGHLTKPFNQGDLL 371
PRK09581  236 D-----EDEDPRLVKAlelgvNDYLMRPIDKNELL 265

-1

137611

PRK09958

DNA-binding transcriptional activator EvgA; Provisional

false

true

false

204

2e-07

52.21

52.94

3,265,5,24,289,30,42,333,72,41

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 266 IDENPIVLNNIKNFLDDQIFAVIG-VTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYfkNTPVIMVTEKA 344
PRK09958    6 IDDHPLAIAAIRNLLIKNDIEILAeLTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQY--SGIIIIVSAKN 83

                      90       100       110
              ....*....|....*....|....*....|
gi 730273 345 GLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
PRK09958   84 DHFYGKHCADAGANGFVSKKEGMNNIIAAI 113

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

2e-07

52.14

46.55

3,262,3,35,298,38,31,332,69,42

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALmEILCTKPDIILINVDMPDLDGYELCSLLRKHsyfKNTPVIMVTE 342
PRK10955    4 ILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQAL-DLLDDSIDLLLLDVMMPKKNGIDTLKALRQT---HQTPVIMLTA 79

                      90       100       110
              ....*....|....*....|....*....|..
gi 730273 343 KAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
PRK10955   80 RGSELDRVLGLELGADDYLPKPFNDRELVARI 111

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

1e-06

49.22

46.86

4,260,5,35,297,40,16,313,58,17,332,75,42

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 261 YTIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKalMEILCTKPDIILINVD--MPDLDGYELCSLLRKHSyfKNTPVI 338
PRK09468    6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQ--MDRLLTRESFHLMVLDlmLPGEDGLSICRRLRSQN--NPTPII 81

                      90       100       110
              ....*....|....*....|....*....|....*.
gi 730273 339 MVTEKAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
PRK09468   82 MLTAKGEEVDRIVGLEMGADDYLPKPFNPRELLARI 117

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

2e-06

48.69

24.29

2,257,1,73,332,74,38

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 258 KKIYTIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfKNTPV 337
PRK11361    2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHE--TRTPV 79

                      90       100       110
              ....*....|....*....|....*....|...
gi 730273 338 IMVTEKAGLVDRARAKIVRASGHLTKPFNQGDL 370
PRK11361   80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDEL 112

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

3e-06

47.87

29.36

2,305,43,25,332,68,39

                      10        20        30        40        50        60
              ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 730273 306 DIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDLL 371
TIGR01387  44 DLIILDVMLPGMDGWQILQTLRRSG--KQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELL 107

-1

138104

PRK10710

DNA-binding transcriptional regulator BaeR; Provisional

false

true

false

240

8e-06

46.66

25.00

2,302,52,26,331,78,34

                      10        20        30        40        50        60
              ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 730273 303 TKPDIILINVDMPDLDGYELCSLLRKhsyFKNTPVIMVTEKAGLVDRARAKIVRASGHLTKPF 365
PRK10710   53 TPPDLILLDLMLPGTDGLTLCREIRR---FSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPY 112

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

false

true

false

225

8e-06

46.76

32.89

2,294,35,36,333,71,38

                      10        20        30        40        50        60        70
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 730273 295 KALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfkNTPVIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDLL 371
PRK10529   36 RGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWS---AIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQ 109

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

8e-06

46.50

30.47

5,262,2,19,282,21,12,294,34,36,332,70,20,354,90,22

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDdQIFAVIGVTDSL-KALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVT 341
COG3947     3 IIIVDDDAAIVKLLSVILS-RAGHEVRSCSHPvEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIE--SAVPIIFIS 79

                      90       100       110
              ....*....|....*....|....*....|....*
gi 730273 342 EKAGLVDRARAkiVRASGHLTKPFNQGDLLKVIFK 376
COG3947    80 SHAEYADDSFG--MNLDDYLPKPVTPEKLNRAIDR 112

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

1e-05

46.19

15.63

7,184,758,19,203,779,44,259,823,12,274,835,1,276,836,8,284,848,46,332,894,12

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 185 SSQEISSSTEHNQIPVNNR--RSTKFTSPPHTQPKPEPRLPQINTNKSTEYSKRYASQPNTVNHGysqtsatstdkkIYT 262
PRK10841  759 GRAVITFCRRHIGIPLEKApgEWVHSTATPHELPALLARIYRIELESDDSSNALPATDKAVDDND------------DMM 826

                      90       100       110       120       130       140       150       160
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIvlnNiKNFLDDQI----FAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfKNTPVI 338
PRK10841  827 ILVVDDHPI---N-RRLLADQLgslgYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLG--LTLPVI 900


              ....*.
gi 730273 339 MVTEKA 344
PRK10841  901 GVTANA 906

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

1e-05

46.07

16.32

2,291,19,39,334,58,32

                      10        20        30        40        50        60        70
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 730273 292 DSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfknTPVIMVTEKAGLVDRARAKIVRASGHLTKPFN 366
COG3706    20 KGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEP----ATVVMVTALDDSAPRVRGLKAGADDFLTKPVN 90

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

2e-05

45.31

24.63

6,260,1,24,284,27,11,295,39,33,330,72,11,344,83,15,359,101,17

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 261 YTIFCIDENPIVLNNIKNFLDDQI--FAVIGVTDSLK-ALMEILCTKPDIILINVDMPDLDGYELCSLLRKhsYFKNTPV 337
COG4753     2 YKVLIVDDEPLIREGLKSLIDWEAlgIEVVGTAANGKeALELIQETQPDIVITDINMPGMDGLDLIKAIKE--QSPDTEF 79

                      90       100       110       120
              ....*....|....*....|....*....|....*....|..
gi 730273 338 IMVTekaGLVDRARAKIVRASG---HLTKPFNQGDLLKVIFK 376
COG4753    80 IILS---GYDEFEYAKKAMKLGvkdYLLKPVDKAELEEALKK 118

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

3e-05

44.59

34.50

3,284,27,39,323,67,7,333,74,32

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 285 FAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELC-SLLRKHSyfkNTPVIMVTEKAGLVDRARAKIVRASGHLTK 363
PRK11083   28 FTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCrQLRAFHP---ALPVIFLTARSDEVDRLVGLEIGADDYVAK 104


              ..
gi 730273 364 PF 365
PRK11083  105 PF 106

-1

33502

COG3707

AmiR

Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Response regulator with putative antiterminator output domain [Signal transduction...

false

true

false

194

5e-05

44.08

56.70

6,262,7,29,291,37,27,320,64,13,334,77,7,341,86,14,357,100,17

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDDQIFAVIGVT-DSLKALMEILCTKPDIILINVDMPDLDgyELCSLLRKHSYFKnTPVIMVT 341
COG3707     8 VLVADDEALTRMDIREGLLEAGYQRVGEAaDGLEAVEVCERLQPDVVILDIEMPRRD--IIEALLLASENVA-RPIVALT 84

                      90       100       110
              ....*....|....*....|....*....|....*
gi 730273 342 --EKAGLVDRARAKIVraSGHLTKPFNQGDLLKVI 374
COG3707    85 aySDPALIEAAIEAGV--MAYIVKPLDESRLLPIL 117

-1

138611

PRK11517

transcriptional regulatory protein YedW; Provisional

false

true

false

223

6e-05

43.77

47.53

2,262,2,67,332,69,39

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHsyfKNTPVIMVTE 342
PRK11517    3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLTA 79

                      90       100
              ....*....|....*....|....*....
gi 730273 343 KAGLVDRARAKIVRASGHLTKPFNQGDLL 371
PRK11517   80 RDSVDDRVRGLDSGANDYLVKPFSFSELL 108

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

6e-05

43.66

46.88

6,260,0,22,282,23,21,303,45,28,333,73,8,341,84,14,358,98,7

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 261 YTIFCIDENPIVLNNIKNFLDD-QIFAVIGVTDSLKALMEILCT-KPDIILINVDMPDLDGYELCSLLRKHSYfkNTPVI 338
COG4565     1 INVLIIEDDPMVAEIHRRYVKQiPGFSVVGTAGTLEEAKMIIEEfKPDLILLDIYMPDGNGIELLPELRSQHY--PVDVI 78

                      90       100       110
              ....*....|....*....|....*....|
gi 730273 339 MVT---EKAGLVDRARAKIVrasGHLTKPF 365
COG4565    79 VITaasDMETIKEALRYGVV---DYLIKPF 105

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

7e-05

43.55

34.06

2,304,46,66,370,115,9

                      10        20        30        40        50        60        70
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 730273 305 PDIILINVDMPDLDGYELCSLLRKHSYFKNTPVIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDL---LKVIFKHIT 379
PRK10161   47 PDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELvarIKAVMRRIS 124

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

1e-04

42.58

30.00

4,261,2,19,280,23,41,324,64,18,342,84,23

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 262 TIFCIDENPIVLNNIKNFL--DDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYElcsLLRKHSYFKNTPVIM 339
COG2201     3 RVLVVDDSALMRKVISDILnsDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLE---ALRKIMRLRPLPVIM 79

                      90       100
              ....*....|....*....|....*...
gi 730273 340 VTE--KAGLVDRARAKIVRASGHLTKPF 365
COG2201    80 VSSltEEGAEATLEALELGAVDFIAKPS 107

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

1e-04

42.46

22.90

8,286,29,4,290,34,31,321,66,8,333,74,8,346,82,5,351,88,4,355,93,5,360,103,5

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 287 VIGV-TDSLKALMEILCTKPDIILINVDMPDLDGYE-LCSLLRKHsyfkNTPVIMVTekaglVDRAR-AKIV-RASGH-- 360
PRK00742   30 VVGTaRDGLEAVEKIKKLNPDVITLDVEMPVMDGIEaLRKIMALR----PTPVVMVS-----SLTERgAEITlEALELga 100


              ....*...
gi 730273 361 ---LTKPF 365
PRK00742  101 vdfVPKPF 108

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

1e-04

42.30

22.94

6,286,28,4,290,33,31,321,65,9,334,74,7,344,81,16,360,102,4

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 287 VIGV-TDSLKALMEILCTKPDIILINVDMPDLDGYE-LCSLLRKHSyfknTPVIMVTekaGLVDRARAKIVRASGH---- 360
PRK12555   29 VLGVaTDGLQARDLCKAQPPDVVLLDLEMPRMDGLTfLRRIMRRRP----CPVLIVS---SLTEAGASITYEALGAgald 101


              ....*
gi 730273 361 -LTKP 364
PRK12555  102 aVDKP 106

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

4e-04

41.20

52.31

5,261,7,19,280,28,51,333,79,8,341,90,12,356,102,18

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 262 TIFCIDENPIVLNNIKNFL--DDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYfkNTPVIM 339
PRK10651    8 TILLIDDHPMLRTGVKQLIsmAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSL--SGRIVV 85

                      90       100       110
              ....*....|....*....|....*....|....*...
gi 730273 340 VT---EKAGLVDRARAKivrASGHLTKPFNQGDLLKVI 374
PRK10651   86 FSvsnHEEDVVTALKRG---ADGYLLKDMEPEDLLKAL 120

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

7e-04

40.34

29.10

3,303,46,27,332,73,20,354,93,24

                      10        20        30        40        50        60        70
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 730273 304 KPDIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVTEKAGLVDRARAkiVRASGHLTKPFNQGDLLKVIFKHI 378
COG3279    47 RPDLVFLDIAMPDINGIELAARIRKGD--PRPAIVFVTAHDEYAVAAFE--VEALDYLLKPISEERLAKTLERLR 117

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

7e-04

40.22

55.45

2,260,4,71,333,75,41

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 261 YTIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYfkNTPVIMV 340
COG4566     5 PLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGI--RLPVIFL 82

                      90       100       110
              ....*....|....*....|....*....|....
gi 730273 341 TEKAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
COG4566    83 TGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAV 116

-1

137598

PRK09935

transcriptional regulator FimZ; Provisional

false

true

false

210

7e-04

40.26

55.24

4,258,1,23,281,25,24,305,50,17,324,67,50

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 259 KIYTIFCIDENPIVLNNIKNFLD-DQIFAVIGVTDSLKALMEILCTKP-DIILINVDMPDLDGYELcsLLRKHSYFKNTP 336
PRK09935    2 KPASVIIMDEHPIVRMSIEVLLQkNSNIQVVLKTDDSRITIDYLRTYPvDLVILDIELPGTDGFTL--LKRIKQIQETVK 79

                      90       100       110
              ....*....|....*....|....*....|....*...
gi 730273 337 VIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
PRK09935   80 VLFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAV 117

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

0.001

39.62

28.32

2,305,45,25,332,70,39

                      10        20        30        40        50        60
              ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 730273 306 DIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDLL 371
PRK09836   46 DLIILDIMLPDVNGWDIVRMLRSAN--KGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELL 109

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

0.001

39.34

14.69

2,304,42,18,324,60,50

                      10        20        30        40        50        60        70
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 305 PDIILINVDMPDLDGYELcsLLRKHSYFKNTPVIMVTEKAGLVDRARAKIVRASGHLTKPFNQGDLLKVI 374
TIGR01818  43 PDLLITDVRMPGEDGLDL--LPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLV 110

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

0.003

38.10

48.21

4,260,2,28,289,30,13,302,44,28,333,72,38

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 261 YTIFCIDENPIVLNNIKNFLDDQIFAVIgVTDSLKALMEILC-TKPDIILINVDMPDLDGYELCSLLRKHSyfkNTPVIM 339
PRK10766    3 YHILVVEDEPVTRARLQGYFEQEGYRVS-EAASGAGMREIMQnQHVDLILLDINLPGEDGLMLTRELRSRS---TVGIIL 78

                      90       100       110
              ....*....|....*....|....*....|..
gi 730273 340 VTEKAGLVDRARAKIVRASGHLTKPFNQGDLL 371
PRK10766   79 VTGRTDSIDRIVGLEMGADDYVTKPFELRELL 110

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

0.005

37.49

45.74

2,262,2,68,332,70,34

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVTE 342
PRK10816    3 VLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSND--VSLPILVLTA 80

                      90       100
              ....*....|....*....|....
gi 730273 343 KAGLVDRARAKIVRASGHLTKPFN 366
PRK10816   81 RESWQDKVEVLSAGADDYVTKPFH 104

-1

137827

PRK10336

DNA-binding transcriptional regulator QseB; Provisional

false

true

false

219

0.005

37.61

46.12

4,262,2,34,297,36,8,305,45,25,332,70,33

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 263 IFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKAlMEILCTKP-DIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVT 341
PRK10336    3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQG-KEALYSAPyDAVILDLTLPGMDGRDILREWREKG--QREPVLILT 79

                      90       100
              ....*....|....*....|....
gi 730273 342 EKAGLVDRARAKIVRASGHLTKPF 365
PRK10336   80 ARDALAERVEGLRLGADDYLCKPF 103

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

0.006

37.02

7.44

2,261,959,69,332,1028,20

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273  262 TIFCIDENPIVLNNIKNFLDDQIFAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSyfKNTPVIMVT 341
PRK09959   960 SILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQN--SSLPIWGLT 1037

                       90
               ....*....|.
gi 730273  342 EKAGLVDRARA 352
PRK09959  1038 ANAQANEREKG 1048

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

0.006

37.08

45.04

5,257,0,3,261,3,23,284,27,7,291,35,75,370,110,8

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 258 KKIyTIFCIDENPIVLNNIKNFLDDQI-FAVIGVT-DSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYFKNT 335
TIGR02875   1 HKI-RIVIADDNKEFCNLLKEYLAAQPdMEVVGVAhNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79

                      90       100       110       120
              ....*....|....*....|....*....|....*....|...
gi 730273 336 PVIMVTEKAGLVDRARAKIVRASGHLTKPFNqgdlLKVIFKHI 378
TIGR02875  80 RVIMLSAFGQEKITQRAVALGADYYVLKPFD----LEILAARI 118

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

0.007

36.99

38.29

2,284,24,47,333,71,38

                      10        20        30        40        50        60        70        80
              ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730273 285 FAVIGVTDSLKALMEILCTKPDIILINVDMPDLDGYELCSLLRKHSYfkNTPVIMVTEKAGLVDRARAKIVRASGHLTKP 364
PRK10643   25 YACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKKY--TLPVLILTARDTLEDRIAGLDVGADDYLVKP 102


              ....*..
gi 730273 365 FNQGDLL 371
PRK10643  103 FALEELH 109

-1

active site	0	8	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC