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Conserved domains on  [gi|307568046|pdb|2XG2|1]
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List of domain hits

Name Accession Description Interval E-value
rpmB PRK00359
50S ribosomal protein L28; Reviewed
1-85 8.64e-14

50S ribosomal protein L28; Reviewed


:

Pssm-ID: 234736  Cd Length: 76  Bit Score: 61.40  E-value: 8.64e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2XG2_1        1 MSKVCEISGKRPIVANSIQrrgkakreggvgkKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKV--YELVER 76
Cdd:PRK00359  1 MSRVCEITGKGPMVGNNVS-------------HSNNKTKRRFLPNLQKVRFWVEeeGRFVRLRVSARALRTIdkKGLDAV 67

                ....*....
2XG2_1       77 AKGLRLEGL 85
Cdd:PRK00359 68 LKKARARGL 76
 
Name Accession Description Interval E-value
rpmB PRK00359
50S ribosomal protein L28; Reviewed
1-85 8.64e-14

50S ribosomal protein L28; Reviewed


Pssm-ID: 234736  Cd Length: 76  Bit Score: 61.40  E-value: 8.64e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2XG2_1        1 MSKVCEISGKRPIVANSIQrrgkakreggvgkKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKV--YELVER 76
Cdd:PRK00359  1 MSRVCEITGKGPMVGNNVS-------------HSNNKTKRRFLPNLQKVRFWVEeeGRFVRLRVSARALRTIdkKGLDAV 67

                ....*....
2XG2_1       77 AKGLRLEGL 85
Cdd:PRK00359 68 LKKARARGL 76
L28 TIGR00009
ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ...
1-65 1.68e-09

ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272851  Cd Length: 56  Bit Score: 49.18  E-value: 1.68e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
2XG2_1         1 MSKVCEISGKRPIVANSIQrrgkakreggvgkKTTGISKRRQYPNLQKVRVRVAGQEITFRVAAS 65
Cdd:TIGR00009  1 MSRKCELTGKGPLSGNNVS-------------HSHRKTKRRFKPNLQKKRVWVPGRFKRLRVSAK 52
RpmB COG0227
Ribosomal protein L28 [Translation, ribosomal structure and biogenesis];
1-65 8.66e-06

Ribosomal protein L28 [Translation, ribosomal structure and biogenesis];


Pssm-ID: 223305  Cd Length: 77  Bit Score: 39.22  E-value: 8.66e-06
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*..
2XG2_1       1 MSKVCEISGKRPIVANSiqrRGKAKReggvgkkttgISKRRQYPNLQKVR--VRVAGQEITFRVAAS 65
Cdd:COG0227  1 MSRRCQLTGKGPMSGNN---VSHSHN----------KTKRRFLPNLQKVRfwSLSDGRFKRLRVSAK 54
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
3-65 1.02e-04

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 250161  Cd Length: 61  Bit Score: 35.91  E-value: 1.02e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
2XG2_1         3 KVCEISGKRPIVANsiqRRGKAKReggvgkKTtgisKRRQYPNLQKVRVRVA--GQEITFRVAAS 65
Cdd:pfam00830  1 RRCQLTGKGPMFGN---NVSHSNN------KT----KRRWKPNLQKKRLWSEslGRWVRLKVSTK 52
 
Name Accession Description Interval E-value
rpmB PRK00359
50S ribosomal protein L28; Reviewed
1-85 8.64e-14

50S ribosomal protein L28; Reviewed


Pssm-ID: 234736  Cd Length: 76  Bit Score: 61.40  E-value: 8.64e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2XG2_1        1 MSKVCEISGKRPIVANSIQrrgkakreggvgkKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKV--YELVER 76
Cdd:PRK00359  1 MSRVCEITGKGPMVGNNVS-------------HSNNKTKRRFLPNLQKVRFWVEeeGRFVRLRVSARALRTIdkKGLDAV 67

                ....*....
2XG2_1       77 AKGLRLEGL 85
Cdd:PRK00359 68 LKKARARGL 76
L28 TIGR00009
ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ...
1-65 1.68e-09

ribosomal protein L28; This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272851  Cd Length: 56  Bit Score: 49.18  E-value: 1.68e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
2XG2_1         1 MSKVCEISGKRPIVANSIQrrgkakreggvgkKTTGISKRRQYPNLQKVRVRVAGQEITFRVAAS 65
Cdd:TIGR00009  1 MSRKCELTGKGPLSGNNVS-------------HSHRKTKRRFKPNLQKKRVWVPGRFKRLRVSAK 52
RpmB COG0227
Ribosomal protein L28 [Translation, ribosomal structure and biogenesis];
1-65 8.66e-06

Ribosomal protein L28 [Translation, ribosomal structure and biogenesis];


Pssm-ID: 223305  Cd Length: 77  Bit Score: 39.22  E-value: 8.66e-06
                       10        20        30        40        50        60
               ....*....|....*....|....*....|....*....|....*....|....*....|....*..
2XG2_1       1 MSKVCEISGKRPIVANSiqrRGKAKReggvgkkttgISKRRQYPNLQKVR--VRVAGQEITFRVAAS 65
Cdd:COG0227  1 MSRRCQLTGKGPMSGNN---VSHSHN----------KTKRRFLPNLQKVRfwSLSDGRFKRLRVSAK 54
Ribosomal_L28 pfam00830
Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and ...
3-65 1.02e-04

Ribosomal L28 family; The ribosomal 28 family includes L28 proteins from bacteria and chloroplasts. The L24 protein from yeast also contains a region of similarity to prokaryotic L28 proteins. L24 from yeast is also found in the large ribosomal subunit


Pssm-ID: 250161  Cd Length: 61  Bit Score: 35.91  E-value: 1.02e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
2XG2_1         3 KVCEISGKRPIVANsiqRRGKAKReggvgkKTtgisKRRQYPNLQKVRVRVA--GQEITFRVAAS 65
Cdd:pfam00830  1 RRCQLTGKGPMFGN---NVSHSNN------KT----KRRWKPNLQKKRLWSEslGRWVRLKVSTK 52
PRK02277 PRK02277
orotate phosphoribosyltransferase-like protein; Provisional
72-94 5.70e-03

orotate phosphoribosyltransferase-like protein; Provisional


Pssm-ID: 235023  Cd Length: 200  Bit Score: 32.92  E-value: 5.70e-03
                         10        20
                 ....*....|....*....|...
2XG2_1        72 ELVERAKGLRLEGLSPKEIKKEL 94
Cdd:PRK02277   6 ELIEKAAELKNKGLSTGEIADEL 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.14
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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