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Conserved domains on  [gi|30262203|ref|NP_844580.1|]
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hypothetical protein BA_2188 [Bacillus anthracis str. Ames]

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PP2Cc super family cl00120
Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and ...
29-98 6.20e-04

Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.


The actual alignment was detected with superfamily member smart00331:

Pssm-ID: 260203  Cd Length: 193  Bit Score: 38.48  E-value: 6.20e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30262203     29 VRAKETQDLNESGQDFLAFQDNGTSFIFVLCDGVGlsfHGEMAAEFLGMkLLNLFETYQESGWDIAELLN 98
Cdd:smart00331   6 IAQYYEDATQVGGDFYDVVKLPEGRLLIAIADVMG---KGLAAALAMSM-ARSALRTLLSEGISLSQILE 71
 
Name Accession Description Interval E-value
PP2C_SIG smart00331
Sigma factor PP2C-like phosphatases;
29-98 6.20e-04

Sigma factor PP2C-like phosphatases;


Pssm-ID: 214624  Cd Length: 193  Bit Score: 38.48  E-value: 6.20e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30262203     29 VRAKETQDLNESGQDFLAFQDNGTSFIFVLCDGVGlsfHGEMAAEFLGMkLLNLFETYQESGWDIAELLN 98
Cdd:smart00331   6 IAQYYEDATQVGGDFYDVVKLPEGRLLIAIADVMG---KGLAAALAMSM-ARSALRTLLSEGISLSQILE 71
 
Name Accession Description Interval E-value
PP2C_SIG smart00331
Sigma factor PP2C-like phosphatases;
29-98 6.20e-04

Sigma factor PP2C-like phosphatases;


Pssm-ID: 214624  Cd Length: 193  Bit Score: 38.48  E-value: 6.20e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30262203     29 VRAKETQDLNESGQDFLAFQDNGTSFIFVLCDGVGlsfHGEMAAEFLGMkLLNLFETYQESGWDIAELLN 98
Cdd:smart00331   6 IAQYYEDATQVGGDFYDVVKLPEGRLLIAIADVMG---KGLAAALAMSM-ARSALRTLLSEGISLSQILE 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.14
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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