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Conserved domains on  [gi|17565428|ref|NP_504575|]
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Protein CRT-1 [Caenorhabditis elegans]

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
17-327 2.82e-163

Calreticulin family;


:

Pssm-ID: 249724  Cd Length: 359  Bit Score: 465.62  E-value: 2.82e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428    17 VYFKEEFND-ASWEKRWVQSKH-KDDFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVK 94
Cdd:pfam00262   1 VYFFEQFDDdDLWEKRWIPSKAkKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKFPKPFSNKGKTLVVQYEVK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428    95 HEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILN------YKGENKLIKKEITCKsDELTHLY 167
Cdd:pfam00262  81 LQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDICGSdTKKVHFIFRhkpitgYKEEKHLIKKPISRC-DKLTHLY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   168 TLILNSDNTYEVKIDGESAQTGSLEEDWD--LLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWE------------- 232
Cdd:pfam00262 160 TLIIRPDNTFEILIDGEVVKSGSLLEDFDppFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDedepefipdpnav 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   233 --------KPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNP-----------------EYKGEWKPKQIKNPAYKGKWIHP 287
Cdd:pfam00262 240 kpegwledEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPkcekacgcgkppmiknpKYKGKWKPPMIDNPNYKGVWKPR 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 17565428   288 EIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIII 327
Cdd:pfam00262 320 KIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILFDNILI 359
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
17-327 2.82e-163

Calreticulin family;


Pssm-ID: 249724  Cd Length: 359  Bit Score: 465.62  E-value: 2.82e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428    17 VYFKEEFND-ASWEKRWVQSKH-KDDFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVK 94
Cdd:pfam00262   1 VYFFEQFDDdDLWEKRWIPSKAkKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKFPKPFSNKGKTLVVQYEVK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428    95 HEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILN------YKGENKLIKKEITCKsDELTHLY 167
Cdd:pfam00262  81 LQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDICGSdTKKVHFIFRhkpitgYKEEKHLIKKPISRC-DKLTHLY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   168 TLILNSDNTYEVKIDGESAQTGSLEEDWD--LLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWE------------- 232
Cdd:pfam00262 160 TLIIRPDNTFEILIDGEVVKSGSLLEDFDppFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDedepefipdpnav 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   233 --------KPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNP-----------------EYKGEWKPKQIKNPAYKGKWIHP 287
Cdd:pfam00262 240 kpegwledEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPkcekacgcgkppmiknpKYKGKWKPPMIDNPNYKGVWKPR 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 17565428   288 EIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIII 327
Cdd:pfam00262 320 KIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILFDNILI 359
Granin pfam01271
Granin (chromogranin or secretogranin);
202-303 6.01e-03

Granin (chromogranin or secretogranin);


Pssm-ID: 250493 [Multi-domain]  Cd Length: 585  Bit Score: 37.28  E-value: 6.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   202 KIKDPDAKKPEDWDERE--YIDDAEDAKpedweKPEHIPDPDAKKPEDWDDEMDG-EWEPPMIDNPEYKGEWKPKQIKNP 278
Cdd:pfam01271 182 KLDGQSKQKRERSDEREksYQDDEDDTY-----RQNNIPYEDVVGGEDWNPIEEGeEDQTQEEVKRSKERTHKGRSLPDE 256
                          90       100
                  ....*....|....*....|....*....
gi 17565428   279 AYKGKwiHP----EIENPEYTPDDELYSY 303
Cdd:pfam01271 257 SKRSG--QLgledEAEEEKEEKGQESRGL 283
 
Name Accession Description Interval E-value
Calreticulin pfam00262
Calreticulin family;
17-327 2.82e-163

Calreticulin family;


Pssm-ID: 249724  Cd Length: 359  Bit Score: 465.62  E-value: 2.82e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428    17 VYFKEEFND-ASWEKRWVQSKH-KDDFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQYTVK 94
Cdd:pfam00262   1 VYFFEQFDDdDLWEKRWIPSKAkKDDDGKWKVEAGKFYGGEEKDKGLVTKDDAKFYAISAKFPKPFSNKGKTLVVQYEVK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428    95 HEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPDICGP-TRRVHVILN------YKGENKLIKKEITCKsDELTHLY 167
Cdd:pfam00262  81 LQQGIDCGGAYIKLLSKDFDQKDFSGETPYTIMFGPDICGSdTKKVHFIFRhkpitgYKEEKHLIKKPISRC-DKLTHLY 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   168 TLILNSDNTYEVKIDGESAQTGSLEEDWD--LLPAKKIKDPDAKKPEDWDEREYIDDAEDAKPEDWE------------- 232
Cdd:pfam00262 160 TLIIRPDNTFEILIDGEVVKSGSLLEDFDppFNPPKEIPDPTDKKPEDWDDREKIPDPEAKKPEDWDedepefipdpnav 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   233 --------KPEHIPDPDAKKPEDWDDEMDGEWEPPMIDNP-----------------EYKGEWKPKQIKNPAYKGKWIHP 287
Cdd:pfam00262 240 kpegwledEPEYIPDPDATKPEDWDDEEDGEWEAPMIPNPkcekacgcgkppmiknpKYKGKWKPPMIDNPNYKGVWKPR 319
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 17565428   288 EIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIII 327
Cdd:pfam00262 320 KIPNPDYFEDPNPYNLEPIGAIGFELWQVKSGILFDNILI 359
Granin pfam01271
Granin (chromogranin or secretogranin);
202-303 6.01e-03

Granin (chromogranin or secretogranin);


Pssm-ID: 250493 [Multi-domain]  Cd Length: 585  Bit Score: 37.28  E-value: 6.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17565428   202 KIKDPDAKKPEDWDERE--YIDDAEDAKpedweKPEHIPDPDAKKPEDWDDEMDG-EWEPPMIDNPEYKGEWKPKQIKNP 278
Cdd:pfam01271 182 KLDGQSKQKRERSDEREksYQDDEDDTY-----RQNNIPYEDVVGGEDWNPIEEGeEDQTQEEVKRSKERTHKGRSLPDE 256
                          90       100
                  ....*....|....*....|....*....
gi 17565428   279 AYKGKwiHP----EIENPEYTPDDELYSY 303
Cdd:pfam01271 257 SKRSG--QLgledEAEEEKEEKGQESRGL 283
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.11
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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