NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|170784852|ref|NP_082465|]
View 

UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 precursor [Mus musculus]

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Galactosyl_T super family cl21608
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
122-311 5.99e-40

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


The actual alignment was detected with superfamily member pfam01762:

Pssm-ID: 272028  Cd Length: 196  Bit Score: 141.69  E-value: 5.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  122 RRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQQarKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCT 201
Cdd:pfam01762   2 RRNAIRKTWMNQGNSEGGRIKSLFLVGLSADTDG--KVADLVMEEAKLYGDIVQVDFEDTYENLTYKTLTGLLWAVSKCP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  202 NASFVLNGDDDVFAHTDNMVTYLQDH--DPDQHLFVGHLIQNVGPIRVPWSKYFIPALVMAEDRYPPYCGGGGFLLSRFT 279
Cdd:pfam01762  80 SAKYIGKIDDDVYFFPDKLLSLLDNGniDPSESSFYGYVMKEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLSRDA 159
                         170       180       190
                  ....*....|....*....|....*....|...
gi 170784852  280 VAALRRAARVLPMFPIDDVFL-GMCLQQQGLAP 311
Cdd:pfam01762 160 AEKLLKASKHRRFLQIEDVYVtGILANDLGISR 192
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
122-311 5.99e-40

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 250845  Cd Length: 196  Bit Score: 141.69  E-value: 5.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  122 RRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQQarKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCT 201
Cdd:pfam01762   2 RRNAIRKTWMNQGNSEGGRIKSLFLVGLSADTDG--KVADLVMEEAKLYGDIVQVDFEDTYENLTYKTLTGLLWAVSKCP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  202 NASFVLNGDDDVFAHTDNMVTYLQDH--DPDQHLFVGHLIQNVGPIRVPWSKYFIPALVMAEDRYPPYCGGGGFLLSRFT 279
Cdd:pfam01762  80 SAKYIGKIDDDVYFFPDKLLSLLDNGniDPSESSFYGYVMKEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLSRDA 159
                         170       180       190
                  ....*....|....*....|....*....|...
gi 170784852  280 VAALRRAARVLPMFPIDDVFL-GMCLQQQGLAP 311
Cdd:pfam01762 160 AEKLLKASKHRRFLQIEDVYVtGILANDLGISR 192
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
88-358 8.67e-18

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 83.31  E-value: 8.67e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  88 HCRDFPVLREPRVTKcAEPVFLLLAIKSSPANYGRRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQqarkYNRLLELEA 167
Cdd:PLN03133 367 HVIDLEALKSPPLSP-KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQM----VNEELWNEA 441
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852 168 QKYGDILQWDFHDsFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRV 247
Cdd:PLN03133 442 RTYGDIQLMPFVD-YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRN 520
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852 248 PWSKYFIPALVMAEDRYPPYCGGGGFLLSRFTVAALRRAARV--LPMFPIDDVFLGMC---LQQQGLAPG--THSGVRTA 320
Cdd:PLN03133 521 PDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEgrLKMFKLEDVAMGIWiaeMKKEGLEVKyeNDGRIYNE 600
                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 170784852 321 GVfppsprvssfdpcfyRDLLLV-HRFLPFEMLLMWDAL 358
Cdd:PLN03133 601 GC---------------KDGYVVaHYQSPREMLCLWQKL 624
 
Name Accession Description Interval E-value
Galactosyl_T pfam01762
Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose: ...
122-311 5.99e-40

Galactosyltransferase; This family includes the galactosyltransferases UDP-galactose:2-acetamido-2-deoxy-D-glucose3beta-galactosyltransferase and UDP-Gal:beta-GlcNAc beta 1,3-galactosyltranferase. Specific galactosyltransferases transfer galactose to GlcNAc terminal chains in the synthesis of the lacto-series oligosaccharides types 1 and 2.


Pssm-ID: 250845  Cd Length: 196  Bit Score: 141.69  E-value: 5.99e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  122 RRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQQarKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCT 201
Cdd:pfam01762   2 RRNAIRKTWMNQGNSEGGRIKSLFLVGLSADTDG--KVADLVMEEAKLYGDIVQVDFEDTYENLTYKTLTGLLWAVSKCP 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  202 NASFVLNGDDDVFAHTDNMVTYLQDH--DPDQHLFVGHLIQNVGPIRVPWSKYFIPALVMAEDRYPPYCGGGGFLLSRFT 279
Cdd:pfam01762  80 SAKYIGKIDDDVYFFPDKLLSLLDNGniDPSESSFYGYVMKEGPVIRNKKSKWYVSPSDYKCSRYPPYASGPFYVLSRDA 159
                         170       180       190
                  ....*....|....*....|....*....|...
gi 170784852  280 VAALRRAARVLPMFPIDDVFL-GMCLQQQGLAP 311
Cdd:pfam01762 160 AEKLLKASKHRRFLQIEDVYVtGILANDLGISR 192
PLN03133 PLN03133
beta-1,3-galactosyltransferase; Provisional
88-358 8.67e-18

beta-1,3-galactosyltransferase; Provisional


Pssm-ID: 215596 [Multi-domain]  Cd Length: 636  Bit Score: 83.31  E-value: 8.67e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852  88 HCRDFPVLREPRVTKcAEPVFLLLAIKSSPANYGRRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQqarkYNRLLELEA 167
Cdd:PLN03133 367 HVIDLEALKSPPLSP-KKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQM----VNEELWNEA 441
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852 168 QKYGDILQWDFHDsFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRV 247
Cdd:PLN03133 442 RTYGDIQLMPFVD-YYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRN 520
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 170784852 248 PWSKYFIPALVMAEDRYPPYCGGGGFLLSRFTVAALRRAARV--LPMFPIDDVFLGMC---LQQQGLAPG--THSGVRTA 320
Cdd:PLN03133 521 PDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEgrLKMFKLEDVAMGIWiaeMKKEGLEVKyeNDGRIYNE 600
                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 170784852 321 GVfppsprvssfdpcfyRDLLLV-HRFLPFEMLLMWDAL 358
Cdd:PLN03133 601 GC---------------KDGYVVaHYQSPREMLCLWQKL 624
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.12
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH