NCBI Conserved Domain Search

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Conserved domains on [gi\|15807665\|ref\|NP_296212.1\|]
hypothetical protein DR_2492 [Deinococcus radiodurans R1]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

30163

cd01948

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

true

false

true

240

3e-52

200.06

100.00

4,2,0,11,14,11,66,80,81,105,187,186,54

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   3 RELAQAFYDGQgFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAW-- 80
cd01948       1 ADLRRALERGE-FELYYQPIVDLRTGRIVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWqa 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  81 --PQLRLSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSN 158
cd01948      80 ggPDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSS 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 159 LSRLRAPWVRGVKLDRSLTSDLPEPSGefSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPLT 238
cd01948     160 LSYLKRLPVDYLKIDRSFVRDIETDPE--DRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYLFSRPLP 237


                ...
gi 15807665 239 AEQ 241
cd01948     238 AEE 240

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

32382

COG2200

Rtn

c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]

false

256

2e-53

204.02

98.83

4,0,3,13,14,16,68,82,87,103,187,190,66

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   1 MARELAQAFYDGQgFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAW 80
COG2200       4 LERDLRQALENGE-FSLYYQPIVDLATGRIVGYEALLRWRHPDGGLISPGEFIPLAEETGLIVELGRWVLEEACRQLRTW 82

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  81 PQ---LRLSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYS 157
COG2200      83 PRagpLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYS 162

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 158 NLSRLRAPWVRGVKLDRSLTSDLPEPSGefSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPL 237
COG2200     163 SLSYLKRLPPDILKIDRSFVRDLETDAR--DQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYLFSRPL 240

                       250
                ....*....|....*.
gi 15807665 238 TAEQLSGLLAAQEQFA 253
COG2200     241 PADALDALLSSSQSRV 256

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

128367

smart00052

EAL

Putative diguanylate phosphodiesterase

false

241

6e-48

185.88

99.59

5,2,1,11,14,12,66,80,82,100,181,182,5,187,187,54

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   3 RELAQAFYDGQgFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAW-- 80
smart00052    2 RELRQALENGQ-FLLYYQPIVSLRTGRLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWqa 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  81 --PQLRLSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSN 158
smart00052   81 qgPPLRISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYSS 160

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 159 LSRLRAPWVRGVKLDRSLTSDLpEPSGEfSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPLT 238
smart00052  161 LSYLKRLPVDLLKIDKSFVRDL-QTDPE-DEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLP 238


                ...
gi 15807665 239 AEQ 241
smart00052  239 LDD 241

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

109613

pfam00563

EAL

EAL domain

false

236

1e-41

164.90

100.00

5,1,0,12,14,12,66,80,85,28,110,113,74,187,187,49

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   2 ARELAQAFYDGQgFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAW- 80
pfam00563     1 EQALREALENGE-FSLYFQPIVDLRTGKVLGYEALLRWQHPDGGLIPPDEFLPLAERLGLIAELDRWVLEKALAQLAEWr 79

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  81 ------PQLRLSVNVSAVQLSRPEFAAQLFGVLDstGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGA 154
pfam00563    80 gnallpPDLPLSVNLSPASLLDPSFLEALLALKQ--GGLPPSRLVLEITESDLDEDLRLLEALARLRSLGFRLALDDFGT 157

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 155 GYSNLSRLRAPWVRGVKLDRSLTSDLPEPSgefSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALS 234
pfam00563   158 GYSSLSYLSRLPPDYIKIDRSFIKDLSDPE---SRALLRALIALARELGIKVVAEGVETEEQLELLKELGIDYVQGYLFS 234


                ..
gi 15807665 235 YP 236
pfam00563   235 KP 236

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

34606

COG5001

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF...

false

true

false

663

5e-40

159.42

34.39

3,12,413,70,82,484,103,187,587,54

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  13 QGFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAWPQ-LRLSVNVSA 91
COG5001     414 QELSVHFQPIVDIVSGKTIALEALARWHSPEIGPVPPDVFIGIAERSGQIVELTRLLLAKALREARAWPMdVRVSINLSA 493

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  92 VQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSNLSRLRAPWVRGVK 171
COG5001     494 RDLASMENVRRLLAIVSESCIAPHRLDFEITETAIVCDFDQARDALAALHELGVRTALDDFGTGYSSLSHLRALPLDKIK 573

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 172 LDRSLTSDLPEPSGefSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPLTAEQ 241
COG5001     574 IDRSFVSDLEENPT--SEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGYHYARPMPAEE 641

-1

138538

PRK11359

cAMP phosphodiesterase; Provisional

false

true

false

799

4e-32

133.04

30.54

4,4,547,9,14,556,70,84,631,101,187,732,59

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   5 LAQAFYDGQgFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAWPQLR 84
PRK11359    548 LKEAISNNQ-LKLVYQPQIFAETGELYGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRSQN 626

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  85 -----LSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSNL 159
PRK11359    627 ihipaLSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFKRIQILRDMGVGLSVDDFGTGFSGL 706

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 160 SRLRAPWVRGVKLDRSLTSDLPEPSGefSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPLTA 239
PRK11359    707 SRLVSLPVTEIKIDKSFVDRCLTEKR--ILALLEAITSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPA 784


                ....*..
gi 15807665 240 EQLSGLL 246
PRK11359    785 EEIPGWM 791

-1

34551

COG4943

Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]

Predicted signal transduction protein containing sensor and EAL domains [Signal...

false

true

false

524

6e-30

125.84

47.14

5,2,270,11,14,281,66,80,351,55,136,406,49,187,455,62

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   3 RELAQAFYDGQgFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAW-- 80
COG4943     271 RRLQRAIERRE-LCVHYQPIVDLATGKCVGAEALARWPQEDGTVVSPDVFIPLAEESGMIEQITDYVIRNVFRDLGDLlr 349

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  81 --PQLRLSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLnIEQLYRRGIGITIDDFGAGYSN 158
COG4943     350 qhRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQIALELTERTFADPKKMTPI-ILRLREAGHEIYIDDFGTGYSN 428

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 159 LSRLRAPWVRGVKLDRSLTSDLPEPSGefSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPLT 238
COG4943     429 LHYLQSLPVDALKIDKSFVDTLGTDSA--SHLIAPHIIEMAKSLGLKIVAEGVETEEQVDWLRKRGVHYGQGWLFSKALP 506

                       250
                ....*....|.
gi 15807665 239 AEQLSGLLAAQ 249
COG4943     507 AQAFLDWAEQQ 517

-1

137662

PRK10060

RNase II stability modulator; Provisional

false

true

false

663

1e-28

121.37

37.71

7,4,412,9,14,421,11,26,432,55,81,491,81,162,573,3,166,576,18,186,594,68

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   5 LAQAFYDGQgFSLAYQPIYDLaSGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAWP--- 81
PRK10060    413 LRKALENDQ-LVIHYQPKITW-RGEVRSLEALVRWQSPERGLIPPLEFISYAEESGLIVPLGRWVILDVVRQAAKWRdkg 490

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  82 -QLRLSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSNLS 160
PRK10060    491 iNLRVAVNVSARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENEELALSVIQQFSQLGAQVHLDDFGTGYSSLS 570

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 161 RL-RAPwVRGVKLDRSLTSDLPEPSgeFSRQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPLTA 239
PRK10060    571 QLaRFP-IDAIKLDQSFVRDIHKQP--VSQSLVRAIVAVAQALNLQVIAEGVETAKEDAFLTKNGVNERQGFLFAKPMPA 647

                       250
                ....*....|....*
gi 15807665 240 EQLSGLLAAQEQFAL 254
PRK10060    648 VAFERWYKRYQKLRL 662

-1

139666

PRK13561

putative phosphodiesterase; Provisional

false

true

false

651

5e-23

103.31

36.10

4,10,409,72,82,485,80,162,568,22,189,590,54

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  11 DGQGFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAWPQ----LRLS 86
PRK13561    410 ENHQFAIWLQPQVEMRSGKLVSAEALLRMQQPDGSWDLPDGLIDRIESCGLMVTVGHWVLEESCRLLAAWQErgimLPLS 489

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  87 VNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSNLSRL---R 163
PRK13561    490 VNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLqhmK 569

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 164 APWVRGVKLDRSLTSDLPEPSgefsrQLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPLTAEQLS 243
PRK13561    570 SLPIDVLKIDKMFVDGLPEDS-----SMVAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGVGVAQGFLFARPLPIEIFE 644

-1

138768

PRK11829

biofilm formation regulator HmsP; Provisional

false

true

false

728

8e-19

88.99

32.28

5,3,476,6,10,482,71,81,557,77,158,637,27,190,664,47

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   4 ELAQAFyDGQGFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAWP-- 81
PRK11829    477 DLLQAI-ENHDFTLFLQPQWDMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKar 555

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  82 --QLRLSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSN- 158
PRK11829    556 gvSLPLSVNISGLQVQNKQFLPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSl 635

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 159 --LSRLRAPWVRGVKLDRSLTSDLPEPSGefsrqLTRNAVNLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYP 236
PRK11829    636 ryLNHLKSLPIHMIKLDKSFVKNLPEDDA-----IARIISCVSDVLKVRVMAEGVETEEQRQWLLEHGIQCGQGFLFSPP 710


                .
gi 15807665 237 L 237
PRK11829    711 L 711

-1

137979

PRK10551

hypothetical protein; Provisional

false

true

false

518

6e-17

82.79

46.53

7,2,265,11,14,276,57,71,337,11,82,349,53,136,402,46,185,448,11,196,460,46

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   3 RELAQAFYDGQgFSLAYQPIYDLASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLD----EACRAAQ 78
PRK10551    266 REILTAIKREQ-FYVVYQPVVDTQTLRVTGLEVLLRWRHPTAGEIPPDAFINYAEAQKLIVPLTQHLFEliarDAAELQK 344

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  79 AWPQ-LRLSVNVSAVQLSRPEFAAQLFGVLDSTGMTTQRLELELTETALLHENEQVQLnIEQLYRRGIGITIDDFGAGYS 157
PRK10551    345 VLPVgAKLGINIAPAHLHSDSFKADVQRLLASLPADHFQIVLEITERDMLQEEEALKL-FAWLHSQGIEIAIDDFGTGHS 423

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665 158 NLSRLRAPWVRGVKLDRSLTSDLPEpsgEFSRQLTRNAV-NLAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYP 236
PRK10551    424 ALIYLERFTLDYLKIDRGFINAIGT---ETVTSPVLDAVlTLAKRLNMLTVAEGVETPEQARWLREHGVNFLQGYWISRP 500


                ....*.
gi 15807665 237 LTAEQL 242
PRK10551    501 LPLDDF 506

-1

137515

PRK09776

putative sensor protein; Provisional

false

true

false

1116

6e-05

43.16

19.18

5,35,899,40,75,942,98,184,1040,13,197,1062,39,239,1101,12

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665   36 LLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACR---AAQAWPQLRLSVNVSAVQLSRPEFAAQLFGVLDSTGM 112
PRK09776     900 SLRLWDCEGEIIDEGAFRPAAEDPALMHALDRWVIHELFQqgaRAVASKGLSIAIPLSVASLSSATLLPFLLEQLENSPL 979

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  113 TTQRLELELTETALLHENEQVQLNIEQLYRRGIGITIDDFGAGYSNLSRLRAPWVRGVKLDrsltsdlpepsGEFSRQLT 192
PRK09776     980 PPRLLHLEITETALLNHAEAASRLVQKLRLAGCRVVLDDFGRGLSSFNYLKAFMADYLKID-----------GELCANLQ 1048

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15807665  193 RNAVN---------LAQYQHTVITAEGLESAAHVEAARQLGCPLGQGYALSYPltaEQLSGLLAAQEQ 251
PRK09776    1049 GNLMDemlvsiingIAQRLGMKTIAGPVELPLTLDTLSGIGVDLAQGYVIGRP---QPLDLLLNSSYF 1113

-1

138376

PRK11059

regulatory protein CsrD; Provisional

false

true

false

642

6e-04

39.48

14.80

3,13,415,11,25,426,56,81,484,26

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807665  14 GFSLAYQPIYDlASGVPVKVEALLRWRHPQLGQISPAEFIPIAQRTGQIAQIGLXVLDEACRAAQAWP--QLRLSVNVSA 91
PRK11059    416 GPRLYQQPVVT-RDGQVHHRELMCRIRDGQGNEVRAAEFMPMVLQCGLSEQYDRQVIERVLPLLSYWPeeSQNLSINLSV 494

                        90
                ....*....|....*.
gi 15807665  92 VQLSRPEFAAQLFGVL 107
PRK11059    495 DSLLSRAFQRWLRDTL 510

-1