NCBI Conserved Domain Search

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Conserved domains on [gi\|15807290\|ref\|NP_296020.1\|]
GGDEF family protein [Deinococcus radiodurans R1]

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List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

30163

cd01948

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

true

false

true

240

2e-72

269.01

96.25

2,576,0,181,761,181,50

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 577 QDLRHAVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQARAWQLP 656
cd01948       1 ADLRRALERGEFELYYQPIVDLRTGRIVGYEALLRWRHPEGGLISPAEFIPLAEETGLIVELGRWVLEEACRQLARWQAG 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 657 ERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTESMVHRDPRLAKQTLRELQALGVKVAMDDFGTGYSSL 736
cd01948      81 GPDLRLSVNLSARQLRDPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGVRIALDDFGTGYSSL 160

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15807290 737 SMLKSLPFGLLKIDREFLQDLsaasEQFAASQQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGYW 811
cd01948     161 SYLKRLPVDYLKIDRSFVRDI----ETDPEDRAIVRAIIALAHSLGLKVVAEGVETEEQLELLRELGCDYVQGYL 231

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

133472

cd01949

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as domain of unknown function 1 (DUF1). It is widely present in bacteria and often links to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain has been suggested to be homologous to the adenylyl cyclase catalytic domain. This prediction correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesiveness in bacteria.

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

true

false

true

157

5e-42

168.15

98.09

3,402,0,25,427,26,62,490,88,66

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 403 HDQLTGLANRSFFYTRARQALDLLA-PGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVRPGDLVGRLSGD 481
cd01949       1 TDPLTGLPNRRAFEERLERLLARARrSGRPLALLLIDLDHFKQINDTYGHAAGDEVLKEVARRLRSSLRESDLVARLGGD 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15807290 482 EFVMLLSDlASPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGYVVAPQDGGDVELLQKRADLALFQAKAQGRN 556
cd01949      81 EFAILLPG-TDLEEAEELAERLRKAIEEPFFIDGEEIRVTASIGIAEYPEDGEDLEELLRRADKALYQAKRSGRN 154

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

128367

smart00052

EAL

Putative diguanylate phosphodiesterase

false

241

1e-71

266.77

95.85

2,576,1,181,761,182,50

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 577 QDLRHAVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQARAWQLP 656
smart00052    2 RELRQALENGQFLLYYQPIVSLRTGRLVGVEALIRWQHPEGGIISPDEFIPLAEETGLIVPLGRWVLEQACQQLAEWQAQ 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 657 ERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTESMVHRDPRLAKQTLRELQALGVKVAMDDFGTGYSSL 736
smart00052   82 GPPLRISINLSARQLISPDLVPRVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYSSL 161

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15807290 737 SMLKSLPFGLLKIDREFLQDLsaasEQFAASQQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGYW 811
smart00052  162 SYLKRLPVDLLKIDKSFVRDL----QTDPEDEAIVQSIIELAQKLGLQVVAEGVETPEQLDLLRSLGCDYGQGYL 232

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

32382

COG2200

Rtn

c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]

false

256

1e-67

253.32

91.80

3,571,0,83,655,83,102,761,185,50

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 572 RRMLSQDLRHAVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQAR 651
COG2200       1 RLQLERDLRQALENGEFSLYYQPIVDLATGRIVGYEALLRWRHPDGGLISPGEFIPLAEETGLIVELGRWVLEEACRQLR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 652 AWQlPERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTESMVHRDPRLAKQTLRELQALGVKVAMDDFGT 731
COG2200      81 TWP-RAGPLRLAVNLSPVQLRSPGLVDLLLRLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGT 159

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 732 GYSSLSMLKSLPFGLLKIDREFLQDLsaasEQFAASQQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGYW 811
COG2200     160 GYSSLSYLKRLPPDILKIDRSFVRDL----ETDARDQAIVRAIVALAHKLGLTVVAEGVETEEQLDLLRELGCDYLQGYL 235

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

109613

pfam00563

EAL

EAL domain

false

236

6e-53

204.57

97.88

5,576,1,77,653,81,29,683,110,26,710,136,47,762,183,49

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 577 QDLRHAVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQARAW--- 653
pfam00563     2 QALREALENGEFSLYFQPIVDLRTGKVLGYEALLRWQHPDGGLIPPDEFLPLAERLGLIAELDRWVLEKALAQLAEWrgn 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 654 QLPERGLTMAVNVSALQFEQSDFVAGVRAcLEQHGLPGHSLVLELTESMVHRDPRLaKQTLRELQALGVKVAMDDFGTGY 733
pfam00563    82 ALLPPDLPLSVNLSPASLLDPSFLEALLA-LKQGGLPPSRLVLEITESDLDEDLRL-LEALARLRSLGFRLALDDFGTGY 159

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15807290 734 SSLSMLKSLPFGLLKIDREFLQDLsaaseQFAASQQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGYW 811
pfam00563   160 SSLSYLSRLPPDYIKIDRSFIKDL-----SDPESRALLRALIALARELGIKVVAEGVETEEQLELLKELGIDYVQGYL 232

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

110022

pfam00990

GGDEF

GGDEF domain

false

160

1e-39

160.10

99.38

3,400,0,24,424,25,74,498,101,58

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 401 ASHDQLTGLANRSFFYTRARQALD-LLAPGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVRPGDLVGRLS 479
pfam00990     1 AAHDPLTGLPNRRYFEEELEQELQrAQRRQSPLALLLLDLDNFKRINDTYGHAVGDEVLQEVAQRLSSSLRRSDLVARLG 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15807290 480 GDEFVMLLSDLASPGDLRL--VAERLLQQLREPCVCGTELVVPTVSLGYVVAPQDGGDVELLQKRADLALFQAKAQGRN 556
pfam00990    81 GDEFAILLPDTSLEGAQELaeRIRRLLAALKIPHTLSGLPLYVTISIGIAAYPNDGEDAEDLLKRADQALYQAKNQGRN 159

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

128563

smart00267

GGDEF

diguanylate cyclase

false

163

1e-38

157.41

100.00

3,398,0,26,424,27,65,490,92,71

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 399 RQASHDQLTGLANRSFFYTRARQALD-LLAPGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVRPGDLVGR 477
smart00267    1 RLAFRDPLTGLPNRRYFEEELEQELQrAQRQGSPFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGDLLAR 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 478 LSGDEFVMLLSDlASPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGYVVAPQDGGDVELLQKRADLALFQAKAQGRNM 557
smart00267   81 LGGDEFALLLPE-TSLEEAIALAERILQQLREPIIIHGIPLYLTISIGVAAYPNPGEDAEDLLKRADTALYQAKKAGRNQ 159


                ....
gi 15807290 558 AVAF 561
smart00267  160 VAVY 163

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

32381

COG2199

c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]

c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction...

false

181

1e-35

146.80

100.00

4,381,0,46,427,47,62,490,109,45,535,155,26

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 382 ERAQAASALRETRVELSRQASHDQLTGLANRSFFYTRARQALDLLA-PGRSLGLIVADIDHLKAINDRFGYAVGDLLITE 460
COG2199       1 ALLRLLTRLRKAEERLERLALHDPLTGLPNRRAFEERLERALARARrHGEPLALLLLDLDHFKQINDTYGHAAGDEVLRE 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 461 LARRLCEAVRPGDLVGRLSGDEFVMLLSDlASPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGYVVAPQDGGD-VELL 539
COG2199      81 VARRLRSNLREGDLVARLGGDEFAVLLPG-TSLEEAARLAERIRAALEEPFFLGGEELRVTVSIGVALYPEDGSDdAELL 159

                       170       180
                ....*....|....*....|..
gi 15807290 540 QKRADLALFQAKAQGRNMAVAF 561
COG2199     160 LRRADLALYRAKRAGRNRVVVF 181

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

129356

TIGR00254

GGDEF

diguanylate cyclase (GGDEF) domain

false

165

3e-33

139.01

100.00

5,399,0,29,428,30,69,498,99,5,503,107,7,511,114,51

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 400 QASHDQLTGLANRSFFYTRARQALDLLAP-GRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVRPGDLVGRL 478
TIGR00254     1 QAVRDPLTGLYNRRYLEEMLDSELKRARRfQRSFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVRGSDVVGRY 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 479 SGDEFVMLLSDLASPGDLRlVAERL---LQQLREPcVCGTELVVPTVSLGYVVAPQDGGDVELLQKRADLALFQAKAQGR 555
TIGR00254    81 GGEEFVVILPGTPLEDALS-KAERLrdaINSKPIE-VAGSETLTVTVSIGVACYPGHGLTLEELLKRADEALYQAKKAGR 158


                ....*..
gi 15807290 556 NMAVAFA 562
TIGR00254   159 NRVVVAD 165

cl00291

140583

GGDEF

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue...

-1

138661

PRK11596

EAL domain-containing protein; Provisional

false

255

0.009

37.77

85.10

13,579,21,21,601,42,14,615,60,2,619,62,5,624,68,11,641,79,13,654,94,12,666,108,9,677,117,8,687,125,3,692,128,10,707,138,73,784,211,27

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 580 RHAVRHGQLQLHYQGIFLLPGqRLSGFEALVRWPHP----KRgmIPPDR-FIALAEESRLIlelgrwVLDEACRQARAWQ 654
PRK11596     22 RRFWLQCERAYTFQPIYRTCG-RLMAVELLTVVTHPsnpsQR--LSPDRyFAEITVSHRLD------VVKEQLDLLAQKA 92

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 655 --LPERGLTMAVNV--SALQFEQSDfvAGVRACLEqhGLPghSLVLELTESMvhrdpRLAKQTLRELQALGVKVAMDDFG 730
PRK11596     93 dfFVRHGLLASVNIdgPTLIALRQQ--PKILRLIE--RLP--WLRFELVEHI-----RLPKDSTFASMCEFGPLWLDDFG 161

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 731 TGYSSLSMLKSLPFGLLKIDREFLQDLSAASEQFAASQQFIEVMVRLAHNlqmrVVAEGVETAEQYDLLCGMGCDEAQGY 810
PRK11596    162 TGMANFSALSEVRYDYIKVARELFVMLRQSPEGRTLFSQLLHLMNRYCRG----VIVEGVETPEEWRDVQRSPAFAAQGY 237


                .
gi 15807290 811 W 811
PRK11596    238 F 238

cl00290

140582

EAL

EAL domain. This domain is found in diverse bacterial signaling proteins. It is called...

-1

34606

COG5001

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms]

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF...

false

true

false

663

5e-75

277.68

65.46

5,370,197,45,417,242,11,428,256,225,656,481,101,761,582,49

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 371 REAELQRKRRNERAQAASALRETRVELSRQASHDQLTGLANRSFFytRARQALDLLAP---GRSLGLIVADIDHLKAIND 447
COG5001     198 REFSDMVQSQVTLTQRAEETRRLSDENDRLANLDSLTGLPNRRRF--FAELDARLAAArqsGRRLVLGVIDLDGFKPVND 275

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 448 RFGYAVGDLLITELARRLCEAVRPGDLVGRLSGDEFVMLLSDLASPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGYV 527
COG5001     276 AFGHATGDRLLIEVGRRLKAFDGAPILAARLGGDEFALIIPALEDDALRVAGARALCESLQAPYDLRGVRVQVGASIGIA 355

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 528 VAPQDGGDVELLQKRADLALFQAKAQGRNMAVAFAGDMSAEEEERRMLSQDLRHAVRHGQLQLHYQGIFLLPGQRLSGFE 607
COG5001     356 PFPSGADTSEQLFERADYALYHAKQNGKGAAVLFDARHEAAIRDMAVVEQALRSADLEQELSVHFQPIVDIVSGKTIALE 435

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 608 ALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQARAWqlpERGLTMAVNVSALQFEQSDFVAGVRACLEQH 687
COG5001     436 ALARWHSPEIGPVPPDVFIGIAERSGQIVELTRLLLAKALREARAW---PMDVRVSINLSARDLASMENVRRLLAIVSES 512

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 688 GLPGHSLVLELTESMVHRDPRLAKQTLRELQALGVKVAMDDFGTGYSSLSMLKSLPFGLLKIDREFLQDLsaasEQFAAS 767
COG5001     513 CIAPHRLDFEITETAIVCDFDQARDALAALHELGVRTALDDFGTGYSSLSHLRALPLDKIKIDRSFVSDL----EENPTS 588

                       410       420       430       440
                ....*....|....*....|....*....|....*....|...
gi 15807290 768 QQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGY 810
COG5001     589 EDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAALGATVMQGY 631

-1

137662

PRK10060

RNase II stability modulator; Provisional

false

true

false

663

3e-73

271.60

62.29

5,390,226,39,430,265,59,490,324,110,601,434,156,761,590,49

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 391 RETRVELSRQASHDQLTGLANRSFFYTRARQALDLLAPGrSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVR 470
PRK10060    227 RRAQERLRILANTDSITGLPNRNAIQELIDHAIAQADNN-QVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCLE 305

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 471 PGDLVGRLSGDEFVMLLSDlASPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGYVVAPQDGGDVELLQKRADLALFQA 550
PRK10060    306 EDQTLARLGGDEFLVLASH-TSQAALEAMASRILTRLRLPFRIGLIEVYTGCSIGIALSPEHGDDSESLIRSADTAMYTA 384

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 551 KAQGRNMAVAFAGDMSAEEEERRMLSQDLRHAVRHGQLQLHYQGIFLLPGqRLSGFEALVRWPHPKRGMIPPDRFIALAE 630
PRK10060    385 KEGGRGQFCVFSPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRG-EVRSLEALVRWQSPERGLIPPLEFISYAE 463

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 631 ESRLILELGRWVLDEACRQARAWQLPERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTESMVHRDPRLA 710
PRK10060    464 ESGLIVPLGRWVILDVVRQAAKWRDKGINLRVAVNVSARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENEELA 543

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 711 KQTLRELQALGVKVAMDDFGTGYSSLSMLKSLPFGLLKIDREFLQDLsaasEQFAASQQFIEVMVRLAHNLQMRVVAEGV 790
PRK10060    544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDI----HKQPVSQSLVRAIVAVAQALNLQVIAEGV 619

                       410       420
                ....*....|....*....|
gi 15807290 791 ETAEQYDLLCGMGCDEAQGY 810
PRK10060    620 ETAKEDAFLTKNGVNERQGF 639

-1

138538

PRK11359

cAMP phosphodiesterase; Provisional

false

true

false

799

2e-67

252.84

51.31

12,391,366,25,420,391,4,424,396,65,490,461,35,527,496,66,593,563,8,602,571,52,656,623,4,660,630,41,701,673,10,713,683,42,759,725,51

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 392 ETRVELSRQASHDQLTGLANRSFFYtrarQALD-LLAPGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVR 470
PRK11359    367 KSRQHIEQLIQFDPMTGLPNRNNLH----NYLDdLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLK 442

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 471 PGDLVGRLSGDEFVMLLSDlASPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGyvVAPQDGGDVELLQKRADLALFQA 550
PRK11359    443 PDQYLCRIEGTQFVLVSLE-NDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIG--ISYDVGKNRDYLLSTAHNAMDYI 519

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 551 KAQGRNMAVAFAGDMSAEEEERRMLSQDLRHAVRHGQLQLHYQ-GIFLLPGQrLSGFEALVRWPHPKRGMIPPDRFIALA 629
PRK11359    520 RKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQpQIFAETGE-LYGIEALARWHDPLHGHVPPSRFIPLA 598

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 630 EESRLILELGRWVLDEACRQARAWQlpERGL---TMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTES--MVH 704
PRK11359    599 EEIGEIENIGRWVIAEACRQLAEWR--SQNIhipALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESmmMEH 676

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 705 RDPRLAKqtLRELQALGVKVAMDDFGTGYSSLSMLKSLPFGLLKIDREFLQdlsaASEQFAASQQFIEVMVRLAHNLQMR 784
PRK11359    677 DTEIFKR--IQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVD----RCLTEKRILALLEAITSIGQSLNLT 750

                       410       420
                ....*....|....*....|....*.
gi 15807290 785 VVAEGVETAEQYDLLCGMGCDEAQGY 810
PRK11359    751 VVAEGVETKEQFEMLRKIHCRVIQGY 776

-1

139666

PRK13561

putative phosphodiesterase; Provisional

false

true

false

651

2e-52

202.69

63.59

8,388,218,35,426,253,99,527,352,7,534,360,120,656,480,6,662,488,77,739,568,18,764,586,46

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 389 ALRETRVELSRQASHDQLTGLANRSFFYTRARQALdllAPGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEA 468
PRK13561    219 LLQRHYEEQNENAMRFPVSDLPNKALLMALLEQVV---ARKQTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSV 295

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 469 VRPGDLVGRLSGDEFVMLLSDLASPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGyvVAPQDGG-DVELLQKRADLAL 547
PRK13561    296 LSPRMVLAQISGYDFAIIANGVKEPWHAITLGQQVLTIINERLPIQRIQLRPSCSIG--IAMFYGDlTAEQLYSRAVSAA 373

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 548 FQAKAQGRNMAVAFAGDMSAEEEERRMLSQDLRHAVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRFIA 627
PRK13561    374 FTARRKGKNQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMRSGKLVSAEALLRMQQPDGSWDLPDGLID 453

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 628 LAEESRLILELGRWVLDEACRQARAWQlpERGLTM--AVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTESMVHR 705
PRK13561    454 RIESCGLMVTVGHWVLEESCRLLAAWQ--ERGIMLplSVNLSALQLMHPNMVADMLELLTRYRIQPGTLILEVTESRRID 531

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 706 DPRLAKQTLRELQALGVKVAMDDFGTGYSSLSML---KSLPFGLLKIDREFLQDLsaaseqfAASQQFIEVMVRLAHNLQ 782
PRK13561    532 DPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLqhmKSLPIDVLKIDKMFVDGL-------PEDSSMVAAIIMLAQSLN 604

                       410       420
                ....*....|....*....|....*...
gi 15807290 783 MRVVAEGVETAEQYDLLCGMGCDEAQGY 810
PRK13561    605 LQMIAEGVETEAQRDWLAKAGVGVAQGF 632

-1

137515

PRK09776

putative sensor protein; Provisional

false

true

false

1116

1e-48

189.92

37.10

8,395,682,29,424,712,69,494,781,15,509,797,69,578,868,31,609,900,41,651,941,106,761,1047,49

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290  396 ELSRQASHDQLTGLANRSFFYTRARQALD-LLAPGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVRPGDL 474
PRK09776     683 QLSYSASHDALTGLANRASFEKQLREALQtVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDV 762

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290  475 VGRLSGDEFVMLLSDLASPgDLRLVAERLLQQLRE-PCVCGTELVVPTVSLGYVVAPQDGGDVELLQKRADLALFQAKAQ 553
PRK09776     763 LARLGGDEFGLLLPDCNVE-SARFIATRIISAINDyRFPWEGRVYRVGASAGITAIDDNNHQASEVMSQADIACYAAKNA 841

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290  554 GRNMAVAFAGDMSAEEEERRMLSQD--LRHAVRHGQLQLHYQGIFLLPGQRLSGFEAL-VRWPHPKRGMIPPDRFIALAE 630
PRK09776     842 GRGRVTVYEPQQAAAHSERRELSLAeqWRSMLEENQLMLQAQEIASPRIPEARNLWLIsLRLWDCEGEIIDEGAFRPAAE 921

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290  631 ESRLILELGRWVLDEACRQArAWQLPERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTESMVHRDPRLA 710
PRK09776     922 DPALMHALDRWVIHELFQQG-ARAVASKGLSIAIPLSVASLSSATLLPFLLEQLENSPLPPRLLHLEITETALLNHAEAA 1000

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290  711 KQTLRELQALGVKVAMDDFGTGYSSLSMLKSLPFGLLKIDREFLQDLsaasEQFAASQQFIEVMVRLAHNLQMRVVAEGV 790
PRK09776    1001 SRLVQKLRLAGCRVVLDDFGRGLSSFNYLKAFMADYLKIDGELCANL----QGNLMDEMLVSIINGIAQRLGMKTIAGPV 1076

                        410       420
                 ....*....|....*....|
gi 15807290  791 ETAEQYDLLCGMGCDEAQGY 810
PRK09776    1077 ELPLTLDTLSGIGVDLAQGY 1096

-1

138768

PRK11829

biofilm formation regulator HmsP; Provisional

false

true

false

728

7e-46

181.05

61.54

5,357,257,24,381,282,4,387,286,348,735,637,38,780,675,30

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 358 GLLAEQIRYEVLRREAELQRKRRN-ERAQaaSALRETRVELSRQASHDQLTGLANRSFFYTRARQALDLLAPGRSLGLIV 436
PRK11829    258 GVLHHQLTLPAHHQDDELGVLVRNyNRNQ--QLLADAYADMGRISHRFPVTELPNRSLFISLLEKEIASSTRTDHFHLLV 335

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 437 ADIDHLKAINDRFGYAVGDLLITELARRLCEAVRPGDLVGRLSGDEFVMLLSDLASPGDLRLVAERLLQQLREPCVCGTE 516
PRK11829    336 IGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDSDLLAQLSKTEFAVLARGTRRSFPAMQLARRIMSQVTQPLFFDEI 415

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 517 LVVPTVSLGYVVAPQDGGDVELLQKRADLALFQAKAQGRNMAVAFAGDMSAEEEERRMLSQDLRHAVRHGQLQLHYQGIF 596
PRK11829    416 TLRPSASIGITRYQAQQDTAESMMRNASTAMMAAHHEGRNQIMVFEPHLIEKTHKRLTQENDLLQAIENHDFTLFLQPQW 495

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 597 LLPGQRLSGFEALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQARAWQLPERGLTMAVNVSALQFEQSDF 676
PRK11829    496 DMKRQQVIGAEALLRWCQPDGSYVLPSGFVHFAEEEGMMVPLGNWVLEEACRILADWKARGVSLPLSVNISGLQVQNKQF 575

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 677 VAGVRACLEQHGLPGHSLVLELTESMVHRDPRLAKQTLRELQALGVKVAMDDFGTGYSS---LSMLKSLPFGLLKIDREF 753
PRK11829    576 LPHLKTLISHYHIDPQQLLLEITETAQIQDLDEALRLLRELQGLGLLIALDDFGIGYSSlryLNHLKSLPIHMIKLDKSF 655

                       410       420       430       440       450
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15807290 754 LQDLSAASEQFAASQQFIEVmvrlahnLQMRVVAEGVETAEQYDLLCGMGCDEAQGY 810
PRK11829    656 VKNLPEDDAIARIISCVSDV-------LKVRVMAEGVETEEQRQWLLEHGIQCGQGF 705

-1

34551

COG4943

Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]

Predicted signal transduction protein containing sensor and EAL domains [Signal...

false

true

false

524

7e-41

164.36

44.66

3,571,265,132,704,397,68,776,465,34

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 572 RRMLSQDLRHAVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQAR 651
COG4943     266 YLSPRRRLQRAIERRELCVHYQPIVDLATGKCVGAEALARWPQEDGTVVSPDVFIPLAEESGMIEQITDYVIRNVFRDLG 345

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 652 AWQLPERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHSLVLELTESMVhRDPRLAKQTLRELQALGVKVAMDDFGT 731
COG4943     346 DLLRQHRDLHVSINLSASDLASPRLIDRLNRKLAQYQVRPQQIALELTERTF-ADPKKMTPIILRLREAGHEIYIDDFGT 424

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15807290 732 GYSSLSMLKSLPFGLLKIDREFLQDLSAASEQFAASQQFIEvmvrLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGY 810
COG4943     425 GYSNLHYLQSLPVDALKIDKSFVDTLGTDSASHLIAPHIIE----MAKSLGLKIVAEGVETEEQVDWLRKRGVHYGQGW 499

-1

137979

PRK10551

hypothetical protein; Provisional

false

true

false

518

1e-34

143.27

43.63

8,581,270,73,654,345,2,657,347,29,688,376,4,692,382,8,700,391,6,708,397,49,761,446,50

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 582 AVRHGQLQLHYQGIFLLPGQRLSGFEALVRWPHPKRGMIPPDRFIALAEESRLILELGRWVLDEACRQARAWQ--LPeRG 659
PRK10551    271 AIKREQFYVVYQPVVDTQTLRVTGLEVLLRWRHPTAGEIPPDAFINYAEAQKLIVPLTQHLFELIARDAAELQkvLP-VG 349

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 660 LTMAVNVSALQFEQSDFVAGVRACLEQhgLPGH--SLVLELTE-SMVHRDprLAKQTLRELQALGVKVAMDDFGTGYSSL 736
PRK10551    350 AKLGINIAPAHLHSDSFKADVQRLLAS--LPADhfQIVLEITErDMLQEE--EALKLFAWLHSQGIEIAIDDFGTGHSAL 425

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15807290 737 SMLKSLPFGLLKIDREFLQDLsaasEQFAASQQFIEVMVRLAHNLQMRVVAEGVETAEQYDLLCGMGCDEAQGYW 811
PRK10551    426 IYLERFTLDYLKIDRGFINAI----GTETVTSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLREHGVNFLQGYW 496

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

6e-28

121.56

44.14

5,367,242,16,389,258,35,424,294,66,491,360,18,509,381,53

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 368 VLRREAELQRKRRNERaqaasaLRETRVELSRQASHDQLTGLANRSFFYTRARQALD-LLAPGRSLGLIVADIDHLKAIN 446
COG3706     243 RARLRRQLRRKRYERQ------LRESLERLQELALVDGLTGLFNRRYFDEHLADLWKrALREGRPLSLLMLDIDDFKEIN 316

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 447 DRFGYAVGDLLITELARRLCEAVRPGDLVGRLSGDEFVMLLSDLaSPGDLRLVAERLLQQLRE---PCVCGTELVVPTVS 523
COG3706     317 DTYGHDVGDEVLRQVARRLRQTVRGLDLVARYGGEEFAVVLPDT-DLEAAIAIAERIRQKINElpfVHELSREPLEVTIS 395

                       170       180       190
                ....*....|....*....|....*....|....*....
gi 15807290 524 LGYVVAPQDGGDVELLQKRADLALFQAKAQGRNMAVAFA 562
COG3706     396 IGVAEGKPGEDSIEELLKRADKALYKAKASGRNRVVVKR 434

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

6e-28

121.56

40.70

7,373,270,9,388,279,3,391,285,6,400,291,24,424,316,65,490,381,19,509,403,53

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 374 ELQRKRRNEraqaasALR---ETRVELsrqASHDQLTGLANRSFFYTRARQALD-LLAPGRSLGLIVADIDHLKAINDRF 449
PRK09581    271 QIRRKRYQD------ALRqnlEQSIEM---AVTDGLTGLHNRRYFDMHLKQLIErANERGKPLSLMMLDIDHFKQVNDTY 341

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 450 GYAVGDLLITELARRLCEAVRPGDLVGRLSGDEFVMLLSDlASPGDLRLVAERLLQQLRE---PCVCGTELVVPTVSLGY 526
PRK09581    342 GHDAGDEVLREFAKRLRKNIRGTDLIARYGGEEFVVVMPD-TDIEVAIAVAERIRRKIAEepfAISDGKERLNVTVSIGV 420

                       170       180       190
                ....*....|....*....|....*....|....*.
gi 15807290 527 VVAPQDGGDVELLQKRADLALFQAKAQGRNMAVAFA 562
PRK09581    421 AELRPSGESIEALIKRADKALYEAKNTGRNRVVALA 456

-1

137770

PRK10245

adrA

diguanylate cyclase AdrA; Provisional

false

true

false

371

3e-19

92.27

46.36

8,384,193,45,429,239,59,490,298,5,495,308,7,503,315,8,514,323,13,527,337,12,540,349,16

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 385 QAASALRETRVELSRQASHDQLTGLANRSFFYTRARQALDLLAPG-RSLGLIVADIDHLKAINDRFGYAVGDLLITELAR 463
PRK10245    194 QTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHnRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTR 273

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 464 RLCEAVRPGDLVGRLSGDEFVMLLSdlASPGD-----LRLVAERlLQQLREPCvcgTELVVPTVSLGYV-VAPQDGGDVE 537
PRK10245    274 QLQITLRGSDVIGRFGGDEFAVIMS--GTPAEsaitaMLRVHEG-LNTLRLPN---APQVTLRISVGVApLNPQMSHYRE 347

                       170
                ....*....|....*....
gi 15807290 538 LLqKRADLALFQAKAQGRN 556
PRK10245    348 WL-KSADLALYKAKKAGRN 365

-1

137576

PRK09894

hypothetical protein; Provisional

false

true

false

293

2e-16

83.22

59.73

7,387,115,12,399,128,24,424,152,65,490,217,19,509,237,22,532,259,24,557,283,7

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 388 SALRETRVELSR-QASHDQLTGLANRSFFYTRARQALdLLAPGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLC 466
PRK09894    116 AALTDYKIYLLTiRSNMDVLTGLPGRRVLDESFDHQL-RNREPLNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLA 194

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 467 EAVRPGDLVGRLSGDEFVMLLSDlASPGDLRLVAERLLQQLRE-PCVCGTELVVPTVSLGYVVAPQdGGDVELLQKRADL 545
PRK09894    195 SWTRPYETVYRYGGEEFIIILKA-ATDEEACRAGERIRQLIANqAITHSEGRINITATFGVTRAFP-EEPLDEVIGRADR 272

                       170
                ....*....|....*....
gi 15807290 546 ALFQAKAQGRNmAVAFAGD 564
PRK09894    273 AMYEGKQAGRN-RVMFIDE 290

-1

137615

PRK09966

hypothetical protein; Provisional

false

true

false

407

4e-16

81.99

40.29

3,389,236,122,511,359,21,533,380,20

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 390 LRETRVELSRQASHDQLTGLANRSFFYTRARQALDLLAPGRSLGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAV 469
PRK09966    237 LQAKNAQLLRTALHDPLTGLANRAAFRSGINTLMNNSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFG 316

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 470 RPGDLVGRLSGDEFVMLLSDLASPGDLRLVAERLLQQLREPC-VCGTELVVPTVSLGYVVAPQDgGDVELLQKRADLALF 548
PRK09966    317 GLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFdLHNGHQTTMTLSIGYAMTIEH-ASAEKLQELADHNMY 395


                ....*
gi 15807290 549 QAKAQ 553
PRK09966    396 QAKHQ 400

-1

138376

PRK11059

regulatory protein CsrD; Provisional

false

true

false

642

1e-12

70.30

73.99

22,333,157,8,341,169,5,348,174,4,358,178,4,364,182,20,384,204,15,399,226,24,423,254,6,432,260,38,470,300,20,491,320,34,526,354,31,559,385,12,571,404,6,581,410,23,605,433,48,655,481,38,693,520,10,703,532,3,707,535,2,710,537,66,780,603,29

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 334 ALRCLREQ----RELEQqhRARLaeqragLLAEqiRYEVLRREAELQRKRRNERA--QAASALRETRVELSR-------Q 400
PRK11059    158 GVRWLRRQlagqELLEE--RARR------ILNG--EREQAVAGSGYEWPRLASRAldHLLEELQDARKERSRfdtfirsN 227

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 401 ASHDQLTGLANRSFFYTRARQAL----DLLAPGrslGLIVADIDHLKAINDRFGYAVGDLLITELARRLCEAVR--PGDL 474
PRK11059    228 AFLDAKTGLGNRLFFDNQLDTLLedqeKVGAHG---VVMLIRLPDFDLLQEELGESQVDELLFELINLLSTFVQryPGAL 304

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 475 VGRLSGDEFVMLLSDLaSPGDLRLVAERLLQQLREPCVCGTELVVPTVSLGyVVAPQDGGDVELLQKRADLALFQAKAQG 554
PRK11059    305 LARYSRSDFAVLLPHR-SLKEADSLASQLLKAVDSLPPPKMLDRDDFLHIG-IAAYRSGQSTEQVMEEAEMALRSAQLQG 382

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 555 RNMavAFAGDMSAEEEE-------RRMLSQdlrhAVRHGQLQLHYQGIFLLPGQRLSgFEALVRWPHPKRGMIPPDRFIA 627
PRK11059    383 GNS--WFMYDKAQDPEKgrgsvrwRTLLEQ----ALVRGGPRLYQQPVVTRDGQVHH-RELMCRIRDGQGNEVRAAEFMP 455

                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 628 LAEESRLILELGRWVLDEACRQARAWqlPERGLTMAVNVSALQFEQSDFVAGVRACLEQHGLPGHS-LVLELTESMV--H 704
PRK11059    456 MVLQCGLSEQYDRQVIERVLPLLSYW--PEESQNLSINLSVDSLLSRAFQRWLRDTLLQCERSQRKrLIFELAEADVvqH 533

                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 705 RDpRLaKQTLRELQALGVKVAMDDFGTGYSSLSMLKSLPFGLLKIDREFLQDLSAASEQFAASQQFIEVMVRlahnLQMR 784
PRK11059    534 ID-RL-RPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIKLHPSLVRNIHQRTENQLFVRSLVGACAG----TETQ 607

                       490       500
                ....*....|....*....|....*
gi 15807290 785 VVAEGVETAEQYDLLCGMGCDEAQG 809
PRK11059    608 VFAEGVESREEWQTLQILGVSGGQG 632

-1

138753

PRK11788

hypothetical protein; Provisional

true

false

389

0.003

39.43

21.59

5,283,185,25,311,210,27,341,237,14,356,251,7,365,258,11

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 284 LGEAALVRGDLAQAREGLGRAEELAntpPLLARVRGSQSRLYEQLGDPAQALRCLreqRELEQQHRARLAEQrAGLLAEQ 363
PRK11788    186 LAQQALARGDLDAARALLKKALAAD---PQCVRASILLGDLALAQGDYAAAIEAL---ERVEEQDPEYLPEV-LPKLMEC 258

                        90
                ....*....|...
gi 15807290 364 irYEVLRREAELQ 376
PRK11788    259 --YQALGDEAEGL 269

-1

32733

COG2909

MalT

ATP-dependent transcriptional regulator [Transcription]

false

true

false

894

0.009

37.98

11.41

2,282,501,26,308,530,73

                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15807290 283 VLGEAALVRGDLAQAREGLGRAEELA---NTPPLLARVRGSQSRLYEQLGDPAQALRCLREQRELEQQHRARLAEQRAGL 359
COG2909     502 VLGEAAHIRGELTQALALMQQAEQMArqhDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581

                        90       100
                ....*....|....*....|..
gi 15807290 360 LAEQIRYEVLRREAELQRKRRN 381
COG2909     582 IRAQLLRAWLRLDLAEAEARLG 603

-1

active site	0	10	10	true	133472	cd01949	GGDEF
I-site	1	3	3	true	133472	cd01949	GGDEF