NCBI Conserved Domain Search

NewSearch

CDD Home

Conserved domains on [gi\|117928994\|ref\|YP_873545.1\|]
response regulator receiver protein [Acidothermus cellulolyticus 11B]

Graphical summary show options »	Show site features Horizontal zoom: ×	?



List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH

of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

5e-18

85.29

99.12

3,22,0,41,64,41,25,91,66,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKReeWRNITLMMVTT 102
cd00156        1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK-PDLILLDIMMPGMDGLELLRRIRKR--GPDIPIIFLTA 77

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKLALL 137
cd00156       78 HGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

4e-19

88.54

89.92

3,18,4,26,44,31,20,65,51,69

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  19 SLLAMVIDDSSAMRLILGRIMRGLGF-DVVEAPNGAEAIARLESGTLpDIALIDWNMPVMDGLAFVNAVRKREEWRNITL 97
PRK10610       5 ELKFLVVDDFSTMRRIVRNLLKELGFnNVEEAEDGVDALNKLQAGGF-GFVISDWNMPNMDGLELLKTIRADGAMSALPV 83

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 117928994  98 MMVTTESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
PRK10610      84 LMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKL 120

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

1e-17

83.78

98.20

3,22,1,41,64,42,31,97,73,37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEWRNItlMMVTT 102
pfam00072      2 LIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKR-PDLILLDIRMPGMDGLELLRRIRRRPPTTPV--IVLTA 78

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
pfam00072     79 HGDEEDAVEALKAGANDFLSKPFDPEELVAAL 110

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

4e-15

75.27

81.54

3,22,8,30,52,39,37,91,76,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNG-AEAIARLESGTLPDIALIDWNMPVMDGLAFVNAVRKReeWRNITLMMVT 101
COG0784        9 LVVDDEPVNRRLLKRLLEDLGYEVVEAADGeEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR--GPNIPVILLT 86

                         90       100
                 ....*....|....*....|....*...
gi 117928994 102 TESEQSQIVRALAAGAHEYVIKPFTPDA 129
COG0784       87 AYADEADRERALAAGADDYLTKPIFLEE 114

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

2e-07

49.50

94.55

2,22,3,40,63,43,12

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGtLPDIALIDWNMP 75
smart00448     4 LVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE-KPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

139572

PRK13435

response regulator; Provisional

false

141

0.004

35.46

77.30

3,21,3,53,76,56,29,108,85,27

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  22 AMVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLPDIALIDWNMpvMDGLAFVNAVRKREEWRNITLMMVT 101
PRK13435       4 VLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRL--ADGPTGVEVARRLSIDGGVEVIFMT 81

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117928994 102 TESEqsqIVRALAAGAHEYVIKPFTPDAIADKLA 135
PRK13435      82 ANPE---RVGHDFAGALGVIAKPYSLRQVARALS 112

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

5e-18

85.07

46.02

2,22,5,39,62,44,65

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMMVTT 102
TIGR02154      6 LVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINE-RGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLTA 84

                         90       100
                 ....*....|....*....|....*
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTP 127
TIGR02154     85 RGEEEDRVRGLETGADDYITKPFSP 109

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

3e-15

75.73

25.52

2,22,135,39,62,174,72

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMMVTT 102
COG3706      136 LVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAE-LPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILLSS 214

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
COG3706      215 KDDDELVVRAFELGVNDYITKPIEEGELRARL 246

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

1e-14

74.18

30.56

3,17,12,44,62,56,24,86,81,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  18 ISLLAMVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAV-RKREEWRNIT 96
COG3437       13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQE-EPPDLVLLDVRMPEMDGAEVLNKLkAMSPSTRRIP 91

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117928994  97 LMMVTTESEQSQIVRALAAGAHEYVIKPFTP 127
COG3437       92 VILLTAYADSEDRQRALEAGADDYLSKPISP 122

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

2e-14

73.45

48.91

3,22,3,40,64,43,26,91,69,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGtlPDIALIDWNMPVMDGLAFVNAVRKREeWRNITLMMVTT 102
COG0745        4 LLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ--PDLVLLDLMLPDLDGLELCRRLRAKK-GSGPPIIVLTA 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKLALL 137
COG0745       81 RDDEEDRVLGLEAGADDYLTKPFSPRELLARLRAL 115

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

6e-14

71.48

23.49

3,23,8,40,64,48,27,93,75,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  24 VIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEwrNITLMMVTTE 103
COG2204        9 VVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP-FDLVLLDIRMPGMDGLELLKEIKSRDP--DLPVIVMTGH 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928994 104 SEQSQIVRALAAGAHEYVIKPFTPDAIADKLA 135
COG2204       86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVE 117

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

1e-13

70.90

48.47

2,22,5,39,62,44,72

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMMVTT 102
PRK10161       6 LVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE-PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTA 84

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
PRK10161      85 RGEEEDRVRGLETGADDYITKPFSPKELVARI 116

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

8e-13

67.84

22.03

3,23,2,40,64,42,25,91,67,37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  24 VIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKReeWRNITLMMVTTE 103
TIGR01818      3 VVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ-PDLLITDVRMPGEDGLDLLPQIKKR--HPQLPVIVMTAH 79

                         90       100
                 ....*....|....*....|....*
gi 117928994 104 SEQSQIVRALAAGAHEYVIKPFTPD 128
TIGR01818     80 SDLDTAVAAYQRGAFEYLPKPFDLD 104

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

2e-12

66.22

46.25

3,22,9,34,57,43,33,93,76,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIaRLESGTLPDIALIDWNMPVMDGLAFVNAVRKREewrNITLMMVTT 102
CHL00148      10 LVVDDEASIRRILETRLSIIGYEVITASDGEEAL-KLFHQEQPDLVILDVMMPKLDGYGVCQEIRKES---DVPIIMLTA 85

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKLALL 137
CHL00148      86 LGDVSDRITGLELGADDYVVKPFSPKELEARIRSV 120

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

3e-12

65.72

23.58

5,22,4,17,39,23,8,47,32,14,62,46,29,93,75,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIM--RGLGFDVV-EAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKREEwrNITLMM 99
COG4753        5 LIVDDEPLIREGLKSLIdwEALGIEVVgTAANGKEALELIQE-TQPDIVITDINMPGMDGLDLIKAIKEQSP--DTEFII 81

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928994 100 VTTESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
COG4753       82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEAL 116

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

8e-12

64.48

22.98

3,22,7,34,57,41,50,109,91,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIaRLESGTLPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMMVTT 102
PRK11361       8 LIVDDEDNVRRMLSTAFALQGFETHCANNGRTAL-HLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYA 86

                         90       100
                 ....*....|....*....|....*...
gi 117928994 103 ESEQSqiVRALAAGAHEYVIKPFTPDAI 130
PRK11361      87 EVETA--VEALRCGAFDYVIKPFDLDEL 112

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

1e-11

63.65

31.01

6,22,5,16,41,21,4,45,30,16,62,46,19,84,65,22,106,89,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRImrgLGFD-----VVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAfvnAVRKREEWRNITL 97
PRK00742       6 LVVDDSAFMRRLLSEI---LNSDpdievVGTARDGLEAVEKIKK-LNPDVITLDVEMPVMDGIE---ALRKIMALRPTPV 78

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117928994  98 MMVTTESEQ--SQIVRALAAGAHEYVIKPFTPDA 129
PRK00742      79 VMVSSLTERgaEITLEALELGAVDFVPKPFLGIS 112

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

2e-11

63.43

54.03

5,22,3,21,43,25,4,47,30,16,64,46,25,91,71,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLG-FDVV-EAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKReeWRNITLMMV 100
COG2197        4 LIVDDHPLVREGLRQLLELEPdLEVVgEASNGEEALDLARELK-PDVVLLDLSMPGMDGLEALKQLRAR--GPDIKVVVL 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 117928994 101 TTESEQSQIVRALAAGAHEYVIKPFTPDAIADKLALL 137
COG2197       81 TAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAV 117

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

4e-11

61.86

23.03

4,23,7,40,64,47,34,100,81,28,131,109,6

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  24 VIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMmvTTE 103
PRK10923       8 VVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT-PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM--TAH 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117928994 104 SEQSQIVRALAAGAHEYVIKPFTPDaiaDKLALL 137
PRK10923      85 SDLDAAVSAYQQGAFDYLPKPFDID---EAVALV 115

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

9e-10

57.60

29.43

5,22,4,21,43,27,17,61,44,19,83,63,17,100,82,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLG--FDVVEAPNGAEAIARLEsGTLPDIALIDWNMPVMDGLafvNAVRKREEWRNITLMMV 100
COG2201        5 LVVDDSALMRKVISDILNSDPdiEVVGTARNGREAIDKVK-KLKPDVITLDVEMPVMDGL---EALRKIMRLRPLPVIMV 80

                         90       100
                 ....*....|....*....|....*..
gi 117928994 101 --TTESEQSQIVRALAAGAHEYVIKPF 125
COG2201       81 ssLTEEGAEATLEALELGAVDFIAKPS 107

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

4e-09

55.51

9.94

3,19,958,40,60,998,26,88,1024,53

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994   20 LLAMVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLeSGTLPDIALIDWNMPVMDGLAFVNAVrkREEWRNITLMM 99
PRK09959      959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-SMQHYDLLITDVNMPNMDGFELTRKL--REQNSSLPIWG 1035

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 117928994  100 VTTESEQSQIVRALAAGAHEYVIKPFTPDAIADKLALLGVLA 141
PRK09959     1036 LTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQLHQVA 1077

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

6e-09

55.09

29.97

3,22,10,41,64,51,27,93,78,33

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEwrNITLMMVTT 102
PRK10693      11 LIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRMNGLKFVEHLRNRGD--QTPVLVISA 87

                         90       100
                 ....*....|....*....|....
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFT 126
PRK10693      88 TENMADIAKALRLGVEDVLLKPVK 111

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

8e-09

54.66

11.93

5,19,824,45,65,869,17,84,886,19,103,907,5,110,912,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  20 LLAMVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLpDIALIDWNMPVMDGLAFvnAVRKREEWRNITLMM 99
PRK10841     825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHI-DIVLSDVNMPNMDGYRL--TQRIRQLGLTLPVIG 901

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 117928994 100 VTTE--SEQSQivRALAAGAHEYVIKPFTPDAIADKLA 135
PRK10841     902 VTANalAEEKQ--RCLEAGMDSCLSKPVTLDVLKQTLT 937

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

1e-08

53.67

44.84

3,22,3,41,64,44,27,93,71,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEwrNITLMMVTT 102
PRK10816       4 LVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL-PDIAIVDLGLPDEDGLSLIRRWRSNDV--SLPILVLTA 80

                         90       100
                 ....*....|....*....|...
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPF 125
PRK10816      81 RESWQDKVEVLSAGADDYVTKPF 103

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

1e-08

53.77

17.51

2,43,26,19,63,45,61

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  44 FDVVEAPNGAEAIARLESGtLPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMMVTTESEQSQIVRALAAGAHEYVIK 123
PRK09581      27 YTVLTASSGAEAIEICERE-QPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVVMVTALDDPSDRVRGLEAGADDFLTK 105


                 .
gi 117928994 124 P 124
PRK09581     106 P 106

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

2e-08

53.43

28.25

4,21,2,42,64,44,33,99,77,14,115,91,13

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  22 AMVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLmmVT 101
COG3947        3 IIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK-PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIF--IS 79

                         90       100
                 ....*....|....*....|....*..
gi 117928994 102 TESEQSQIVRALaaGAHEYVIKPFTPD 128
COG3947       80 SHAEYADDSFGM--NLDDYLPKPVTPE 104

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

false

true

false

225

2e-08

53.31

48.89

6,22,4,27,53,31,5,58,38,6,64,45,23,90,68,35,128,103,11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEApngaEAIAR--LESGTL-PDIALIDWNMPVMDGLAFVNAVRkreEWRNITLMM 99
PRK10529       5 LIVEDEQAIRRFLRTALEGDGMRVFEA----ETLQRglLEAATRkPDLIILDLGLPDGDGIEFIRDLR---QWSAIPVIV 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928994 100 VTTESEQSQIVRALAAGAHEYVIKPFtpdAIADKLALLGV 139
PRK10529      78 LSARSEESDKIAALDAGADDYLSKPF---GIGELQARLRV 114

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

3e-08

52.72

24.72

3,22,8,42,65,50,26,93,76,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLpDIALIDWNMPVMDGLAFVNAVRKREEwrNITLMMVTT 102
PRK10365       9 LVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVF-DLVLCDVRMAEMDGIATLKEIKALNP--AIPVLIMTA 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
PRK10365      86 YSSVETAVEALKTGALDYLIKPLDFDNLQATL 117

-1

137869

PRK10403

transcriptional regulator NarP; Provisional

false

true

false

215

3e-07

49.47

51.63

6,22,9,10,36,19,6,42,30,5,47,36,10,58,46,30,90,76,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRlilgRIMRGL-----GFDVV-EAPNGAEAIArLESGTLPDIALIDWNMPVMDGLAFVNAVRKreEWRNIT 96
PRK10403      10 LIVDDHPLMR----RGVRQLleldpGFEVVaEAGDGASAID-LANRLDIDVILLDLNMKGMSGLDTLNALRR--DGVTAQ 82

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 117928994  97 LMMVTTESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
PRK10403      83 IIILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAI 120

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

3e-07

49.22

43.10

3,22,8,29,52,37,32,86,69,42

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNgAEAIARLESGTLPDIALIDWNMPVMDGLAFVNavRKREEWRNITLMMVTT 102
PRK09468       9 LVVDDDMRLRALLERYLTEQGFQVRSAAN-AEQMDRLLTRESFHLMVLDLMLPGEDGLSICR--RLRSQNNPTPIIMLTA 85

                         90       100
                 ....*....|....*....|....*.
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPD 128
PRK09468      86 KGEEVDRIVGLEMGADDYLPKPFNPR 111

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

3e-07

49.05

45.98

5,22,3,20,42,24,5,47,30,16,64,46,26,92,72,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGL-GFDVV-EAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREewRNITLMMV 100
COG4565        4 LIIEDDPMVAEIHRRYVKQIpGFSVVgTAGTLEEAKMIIEEFK-PDLILLDIYMPDGNGIELLPELRSQH--YPVDVIVI 80

                         90       100
                 ....*....|....*....|....*.
gi 117928994 101 TTESEQSQIVRALAAGAHEYVIKPFT 126
COG4565       81 TAASDMETIKEALRYGVVDYLIKPFT 106

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

4e-07

48.91

51.85

5,22,9,18,40,28,7,47,36,16,64,52,31,97,83,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMR-GLGFDVV-EAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEWRNItlMMV 100
PRK10651      10 LLIDDHPMLRTGVKQLISmAPDITVVgEASNGEQGIELAESLD-PDLILLDLNMPGMNGLETLDKLREKSLSGRI--VVF 86

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928994 101 TTESEQSQIVRALAAGAHEYVIKPFTPDAIADKLA 135
PRK10651      87 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALH 121

-1

34205

COG4567

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [..

false

true

false

182

4e-07

48.81

59.89

3,22,12,39,62,51,29,93,80,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKREEwrNITLMMVTT 102
COG4567       13 LLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAART-APPAYAVVDLKLGDGSGLAVIEALRERRA--DMRIVVLTG 89

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTPDAIADKL 134
COG4567       90 YASIATAVEAVKLGACDYLAKPADADDILAAL 121

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

9e-07

47.35

44.20

3,22,5,42,65,47,25,93,72,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLpDIALIDWNMPVMDGLAFVNAVRKREewrNITLMMVTT 102
PRK10766       6 LVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHV-DLILLDINLPGEDGLMLTRELRSRS---TVGIILVTG 81

                         90       100
                 ....*....|....*....|...
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPF 125
PRK10766      82 RTDSIDRIVGLEMGADDYVTKPF 104

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

1e-06

47.48

29.01

2,48,33,15,64,48,61

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 117928994  49 APNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMMVTTESEQSQIVRALAAGAHEYVIKPF 125
TIGR02875     34 AHNGVDALELIKEQQ-PDVVVLDIIMPHLDGIGVLEKLNEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPF 109

-1

138104

PRK10710

DNA-binding transcriptional regulator BaeR; Provisional

false

true

false

240

1e-06

47.05

42.08

3,22,13,39,62,52,26,91,78,36

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKreeWRNITLMMVTT 102
PRK10710      14 LIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQ-TPPDLILLDLMLPGTDGLTLCREIRR---FSDIPIVMVTA 89

                         90       100
                 ....*....|....*....|....*
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTP 127
PRK10710      90 KIEEIDRLLGLEIGADDYICKPYSP 114

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

2e-06

46.39

51.49

3,18,3,44,63,47,21,86,68,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  19 SLLAMVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGtLPDIALIDWNMPVMDGLAFVNavRKREEWRNITLM 98
COG4566        4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD-RPGCLLLDVRMPGMSGLELQD--RLAERGIRLPVI 80

                         90       100
                 ....*....|....*....|....*..
gi 117928994  99 MVTTESEQSQIVRALAAGAHEYVIKPF 125
COG4566       81 FLTGHGDIPMAVQAMKAGAVDFLEKPF 107

-1

138454

PRK11173

two-component response regulator; Provisional

false

true

false

237

3e-06

45.83

42.62

3,22,6,42,65,48,22,90,70,37

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLpDIALIDWNMPVMDGLAFVNAVRkreEWRNITLMMVTT 102
PRK11173       7 LIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDI-NLVIMDINLPGKNGLLLARELR---EQANVALMFLTG 82

                         90       100
                 ....*....|....*....|....*
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPFTP 127
PRK11173      83 RDNEVDKILGLEIGADDYITKPFNP 107

-1

33502

COG3707

AmiR

Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Response regulator with putative antiterminator output domain [Signal transduction...

false

true

false

194

4e-06

45.62

52.58

4,22,8,25,47,34,14,62,48,19,84,67,43

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVV-EAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAfvnAVRKREEWRNITLMMVT 101
COG3707        9 LVADDEALTRMDIREGLLEAGYQRVgEAADGLEAVEVCER-LQPDVVILDIEMPRRDIIE---ALLLASENVARPIVALT 84

                         90       100
                 ....*....|....*....|....*.
gi 117928994 102 TESEQSQIVRALAAGAHEYVIKPFTP 127
COG3707       85 AYSDPALIEAAIEAGVMAYIVKPLDE 110

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

6e-06

44.82

42.24

3,22,4,41,65,45,26,94,71,31

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTlpDIALIDWNMPVMDGLAFVNAVRKREEwrnITLMMVTT 102
PRK10955       5 LLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSI--DLLLLDVMMPKKNGIDTLKALRQTHQ---TPVIMLTA 79

                         90       100
                 ....*....|....*....|...
gi 117928994 103 ESEQSQIVRALAAGAHEYVIKPF 125
PRK10955      80 RGSELDRVLGLELGADDYLPKPF 102

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

3e-05

42.68

29.71

6,23,5,16,39,22,8,47,31,14,62,45,27,92,72,9,101,83,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  24 VIDDSSAMRLILGRIM-RGLGFDVV-EAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKReewRNITLMMVT 101
PRK12555       6 IVDDSALAREALRRIIaRRPDHRVLgVATDGLQARDLCKA-QPPDVVLLDLEMPRMDGLTFLRRIMRR---RPCPVLIVS 81

                         90       100
                 ....*....|....*....|....*
gi 117928994 102 --TESEQSQIVRALAAGAHEYVIKP 124
PRK12555      82 slTEAGASITYEALGAGALDAVDKP 106

-1

137324

PRK09483

response regulator; Provisional

false

true

false

216

3e-05

42.78

48.61

6,22,4,20,42,25,5,47,31,16,64,47,16,83,63,10,93,74,35

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGL-GFDVV-EAPNGAEAIARLESGTlPDIALIDWNMPVMDGLafvNAVRKREEWR-NITLMM 99
PRK09483       5 LLVDDHELVRAGIRRILEDIkGIKVVgEASCGEDAVKWCRTNA-VDVVLMDMNMPGIGGL---EATRKILRSTpDVKIIM 80

                         90       100
                 ....*....|....*....|....*....
gi 117928994 100 VTTESEQSQIVRALAAGAHEYVIKPFTPD 128
PRK09483      81 LTVHTENPLPAKVMQAGAAGYLSKGAAPQ 109

-1

137611

PRK09958

DNA-binding transcriptional activator EvgA; Provisional

false

true

false

204

6e-05

41.42

49.02

4,21,2,26,47,29,14,62,43,28,92,71,31

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  22 AMVIDDSSAMRLILGRIMRGLGFDVV-EAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKREewRNITLMMV 100
PRK09958       3 AIIIDDHPLAIAAIRNLLIKNDIEILaELTEGGSAVQRVET-LKPDIVIIDVDIPGVNGIQVLETLRKRQ--YSGIIIIV 79

                         90       100
                 ....*....|....*....|...
gi 117928994 101 TTESEQSQIVRALAAGAHEYVIK 123
PRK09958      80 SAKNDHFYGKHCADAGANGFVSK 102

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

7e-05

41.44

21.88

5,22,158,5,27,165,6,33,173,5,43,178,20,64,198,60

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDD--SSAMRL--ILGRImrglgFDVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLM 98
PRK09581     159 LLVDDdvSQAERIanILKEE-----FRVDVLSDPEEALIRAAEGN-YDLIIVSASFENYDPLRLCSQLRSKERTRYVPIL 232

                         90       100
                 ....*....|....*....|....*.
gi 117928994  99 MVTTESEQSQIVRALAAGAHEYVIKP 124
PRK09581     233 LLVDEDEDPRLVKALELGVNDYLMRP 258

-1

139663

PRK13557

histidine kinase; Provisional

false

true

false

538

1e-04

40.86

20.45

4,22,416,53,75,470,22,100,492,18,118,511,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLPDIALIDWNMP-VMDGLAFVNAVRKREEWRNITLmmvT 101
PRK13557     417 LIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPgGMNGVMLAREARRRQPKIKVLL---T 493

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117928994 102 TESEQSQIVRALAAGAH-EYVIKPFTPDAIADK 133
PRK13557     494 TGYAEASIERTDVGGSEfDIVNKPYRRAELARR 526

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

2e-04

40.07

45.05

4,22,3,47,70,50,19,93,69,4,97,75,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLPDIALiDWNMPVMDGLAFVNAVRKReewrNITL--MMV 100
PRK10643       4 LIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVL-DLGLPDEDGLHFLARIRQK----KYTLpvLIL 78

                         90       100
                 ....*....|....*....|....*
gi 117928994 101 TTESEQSQIVRALAAGAHEYVIKPF 125
PRK10643      79 TARDTLEDRIAGLDVGADDYLVKPF 103

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

5e-04

38.72

12.17

7,22,671,8,30,680,4,35,684,29,65,713,37,102,753,7,112,760,13,131,773,10

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSA-MRLIlGRIMRGLGFDVVEAPNGAEAIARLESGTLpDIALIDWNMPVMDGLAFVNAVRKREEWRNITLMMVT 101
PRK11107     672 MAVDDNPAnLKLI-GALLEEQVEHVVLCDSGHQAVELAKQRPF-DLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAVT 749

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 117928994 102 T---ESEQSQIvraLAAGAHEYVIKPFtpdaiaDKLALLGVLA 141
PRK11107     750 AhamAGERERL---LGAGMDDYLAKPI------DEAALKQVLL 783

-1

138099

PRK10701

DNA-binding transcriptional regulator RstA; Provisional

false

true

false

240

6e-04

38.16

33.75

5,44,26,17,62,43,27,91,70,19,111,89,13,125,102,5

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  45 DVVEAPNGAEAIARLESgTLPDIALIDWNMPVMDGLAFVNAVRKReeWRNITLMMVTTESEQSQIVrALAAGAHEYVIKP 124
PRK10701      27 DVTVEPRGDRAEETILR-EQPDLVLLDIMLPGKDGMTICRDLRPK--WSGPIVLLTSLDSDMNHIL-ALEMGACDYILKT 102


                 ....*.
gi 117928994 125 fTPDAI 130
PRK10701     103 -TPPAV 107

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

7e-04

37.98

17.47

3,43,12,19,63,31,28,95,59,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  44 FDVVEAPNGAEAIARLESGtLPDIALIDWNMPVMDGLAFVNAVRKREEwrniTLMMVTTESEQSQIVRALAAGAHEYVIK 123
COG3706       13 KEVATAKKGLIALAILLDH-KPDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGLKAGADDFLTK 87


                 .
gi 117928994 124 P 124
COG3706       88 P 88

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

0.001

37.47

36.70

3,42,21,14,57,35,38,97,73,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  43 GFDVVEAPNGAEAIaRLESGTLPDIALIDWNMPVMDGLAFVNAVRKREEWRNItlMMVTTESEQSQIVRALAAGAHEYVI 122
TIGR01387     22 GYVVDAASNGRDGL-HLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPV--LFLTARDSVADKVKGLDLGADDYLV 98


                 ...
gi 117928994 123 KPF 125
TIGR01387     99 KPF 101

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

0.001

37.26

45.08

5,21,3,23,44,28,19,64,47,33,99,80,8,109,88,25

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  22 AMVIDDSSAMRLILGRIMRGLGF--DVVEAPNGAEAIARLESGTlPDIALIDWNMPVMDGLAFVNAVRKREEWRNITLmm 99
COG3279        4 VLIVDDEPLAREELRRILNEIPDieIVGEAENGEEALQLLQGLR-PDLVFLDIAMPDINGIELAARIRKGDPRPAIVF-- 80

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928994 100 VTTESEQSqiVRALAAGAHEYVIKPFTPDAIADKL 134
COG3279       81 VTAHDEYA--VAAFEVEALDYLLKPISEERLAKTL 113

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

0.002

36.89

44.10

3,23,7,39,63,46,16,81,62,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  24 VIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGtLPDIALIDWNMPVMDGlaFVNAVRKREEWRNITLMMVTTE 103
PRK11083       8 LVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ-PPDLVILDVGLPDISG--FELCRQLRAFHPALPVIFLTAR 84

                         90       100
                 ....*....|....*....|....
gi 117928994 104 SEQSQIVRALAAGAHEYVIKPFTP 127
PRK11083      85 SDEVDRLVGLEIGADDYVAKPFSP 108

-1

138589

PRK11466

hybrid sensory histidine kinase TorS; Provisional

false

true

false

912

0.005

35.00

6.69

1,19,681,61

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928994  20 LLAMVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLPDIALIDWNMPVMDGL 80
PRK11466     682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGI 742

-1

139916

PRK13856

two-component response regulator VirG; Provisional

false

true

false

241

0.006

34.79

41.49

4,22,4,42,65,46,26,94,72,10,104,83,21

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  23 MVIDDSSAMRLILGRIMRGLGFDVVEAPNGAEAIARLESGTLpDIALIDWNMPVMDGLAFVNAVRKREEwrnITLMMVTT 102
PRK13856       5 LVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETV-DVVVVDLNLGREDGLEIVRSLATKSD---VPIIIISG 80

                         90       100
                 ....*....|....*....|....
gi 117928994 103 ES-EQSQIVRALAAGAHEYVIKPF 125
PRK13856      81 DRlEEADKVVALELGATDFIAKPF 104

-1

137244

PRK09390

fixJ

response regulator FixJ; Provisional

false

true

false

202

0.008

34.62

52.48

4,23,7,24,47,34,17,68,51,16,86,67,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928994  24 VIDDSSAMRLILGRIMRGLGFDVV---EAPNGAEAIARLESGTLpdiaLIDWNMPVMDGLAFVNavRKREEWRNITLMMV 100
PRK09390       8 VVDDDEAMRDSLAFLLDSAGFEVRlfeSAQAFLDALPGLRFGCV----VTDVRMPGIDGIELLR--RLKARGSPLPVIVM 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928994 101 TTESEQSQIVRALAAGAHEYVIKPFTPDAIAD 132
PRK09390      82 TGHGDVPLAVEAMKLGAIDFIEKPFEDERLIG 113

-1

active site	0	8	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC