NCBI Conserved Domain Search

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Conserved domains on [gi\|117928992\|ref\|YP_873543.1\|]
response regulator receiver protein [Acidothermus cellulolyticus 11B]

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List of domain hits		?

References:

Marchler-Bauer A et al. (2009), "CDD: specific functional annotation with the Conserved Domain Database.", Nucleic Acids Res.37(D)205-10.

Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.

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of the residues that compose this conserved feature have been mapped to the query sequence.

Click on the triangle to view details about the feature, including a multiple sequence alignment of your query sequence and the protein sequences used to curate the domain model, where hash marks (#) above the aligned sequences show the location of the conserved feature residues.

The thumbnail image, if present, provides an approximate view of the feature's location in 3 dimensions. Click on the triangle for interactive 3D structure viewing options.

This image shows a graphical summary of conserved domains identified on the query sequence. The Show Concise/Full Display button at the top of the page can be used to select the desired level of detail: only top scoring hits (labeled illustration) or all hits (labeled illustration).
Domains are color coded according to superfamilies to which they have been assigned. Hits with scores that pass a domain-specific threshold (specific hits) are drawn in bright colors. Others (non-specific hits) and superfamily placeholders are drawn in pastel colors.
if a domain or superfamily has been annotated with functional sites (conserved features), they are mapped to the query sequence and indicated through sets of triangles with the same color and shade of the domain or superfamily that provides the annotation.
Mouse over the colored bars or triangles to see descriptions of the domains and features. click on the bars or triangles to view your query sequence embedded in a multiple sequence alignment of the proteins used to develop the corresponding domain model.

The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores. Click on the PssmId to view the multiple sequence alignment of the proteins used to develop the corresponding domain model.

To view your query sequence embedded in that multiple sequence alignment, click on the colored bars in the Graphical Summary portion of the search results page, or click on the triangles, if present, that represent functional sites (conserved features) mapped to the query sequence.

Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence. (labeled illustration)
Full Display shows all domain models, in each hit category below, that meet or exceed the RPS-BLAST threshold for statistical significance. (labeled illustration)
Four types of hits can be shown, as available, for each region on the query sequence:

specific hits meet or exceed a domain-specific e-value threshold (illustrated example) and represent a very high confidence that the query sequence belongs to the same protein family as the sequences use to create the domain model
non-specific hits meet or exceed the RPS-BLAST threshold for statistical significance (default E-value cutoff of 0.01, or an E-value selected by user via the advanced search options)
the domain superfamily to which the specific and non-specific hits belong
multi-domain models that were computationally detected and are likely to contain multiple single domains

The CD-Search help document provides more detail about the tool and its features.

Retrieve proteins that contain one or more of the domains present in the query sequence, using the Conserved Domain Architecture Retrieval Tool (CDART).

Modify your query to search against a different database and/or use advanced search options

29071

cd00156

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

true

false

true

113

8e-22

96.85

100.00

2,3,0,23,29,23,90

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   4 LVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFITS 83
cd00156        1 LIVDDDPLIRELLRRLLEKEGYE---VVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTA 77

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 117928992  84 EASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
cd00156       78 HGDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

109140

pfam00072

Response_reg

Response regulator receiver domain

false

111

1e-22

99.58

100.00

2,2,0,24,29,24,87

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFIT 82
pfam00072      1 VLIVDDDPLIRELLRQLLEKEGYV---VAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLT 77

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117928992  83 SEASPAMREQALAAGALFLIAKPFTPEEFHAALD 116
pfam00072     78 AHGDEEDAVEALKAGANDFLSKPFDPEELVAALR 111

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

31127

COG0784

CheY

FOG: CheY-like receiver [Signal transduction mechanisms]

false

130

3e-16

78.74

83.85

3,0,5,26,29,31,10,39,43,71

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEA--TRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPF 78
COG0784        6 LRVLVVDDEPVNRRLLKRLLEDLGYE---VVEAADGEEEalELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIPV 82

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928992  79 GFITSEASPAMREQALAAGALFLIAKPFTPEE 110
COG0784       83 ILLTAYADEADRERALAAGADDYLTKPIFLEE 114

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

138024

PRK10610

chemotaxis regulatory protein CheY; Provisional

false

129

2e-13

69.66

92.25

3,0,5,25,27,30,47,74,79,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYdhHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGW--TTPF 78
PRK10610       6 LKFLVVDDFSTMRRIVRNLLKELGF--NNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAmsALPV 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 117928992  79 GFITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK10610      84 LMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIF 124

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

128724

smart00448

REC

cheY-homologous receiver domain

false

2e-11

62.21

100.00

2,0,0,26,29,26,29

                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMP 58
smart00448     1 MRILVVDDDPLLRELLKALLEREGYE---VDEATDGEEALELLKEEKPDLILLDIMMP 55

cl09944

142340

REC

Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC,...

-1

32386

COG2204

AtoC

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding...

false

true

false

464

7e-19

87.27

25.22

2,0,4,26,29,30,91

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
COG2204        5 ARILVVDDDPDIRELLEQALELAGYE---VVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVLA 120
COG2204       82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALE 121

-1

31088

COG0745

OmpR

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-...

false

true

false

229

1e-16

79.99

50.66

4,0,0,26,29,26,12,42,38,28,70,67,49

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRlMAEQPPDLILCDWNMPGTNGLEFLTAIR-RAGWTTPFG 79
COG0745        1 MRILLVEDDPELAELLKEYLEEEGYE---VDVAADGEEALE-AAREQPDLVLLDLMLPDLDGLELCRRLRaKKGSGPPII 76

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  80 FITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
COG0745       77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALL 116

-1

32379

COG2197

CitB

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain...

false

true

false

211

5e-16

77.69

56.40

2,0,0,24,25,24,95

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGyDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
COG2197        1 IKVLIVDDHPLVREGLRQLLELEP-DLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVV 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVLA 120
COG2197       80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAA 119

-1

131209

TIGR02154

PhoB

phosphate regulon transcriptional regulatory protein PhoB

false

true

false

226

2e-15

76.21

51.77

3,1,3,25,29,28,52,81,82,38

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFI 81
TIGR02154      4 RILVVEDEPAIRELIAYNLEKAGYD---VVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPII 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  82 --TSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
TIGR02154     81 mlTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVL 120

-1

33501

COG3706

PleD

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal...

false

true

false

435

1e-13

69.95

26.90

3,1,133,25,29,158,46,75,206,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWT--TPFG 79
COG3706      134 KILVVDDDATQRERLRRILQVEGFR---VVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTrdIPII 210

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  80 FITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
COG3706      211 LLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQL 250

-1

33728

COG3947

Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Response regulator containing CheY-like receiver and SARP domains [Signal transduction...

false

true

false

361

2e-13

69.61

30.75

4,0,0,23,26,23,59,90,82,11,101,96,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAgydHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
COG3947        1 PRIIIVDDDAAIVKLLSVILSRA---GHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIF 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 117928992  81 ITSEAspamrEQALAAGALFL---IAKPFTPEEFHAALD 116
COG3947       78 ISSHA-----EYADDSFGMNLddyLPKPVTPEKLNRAID 111

-1

133606

CHL00148

orf27

Ycf27; Reviewed

false

true

false

240

3e-13

68.53

47.92

3,0,6,25,28,31,45,74,76,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYdhhDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGwTTPFGF 80
CHL00148       7 EKILVVDDEASIRRILETRLSIIGY---EVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKES-DVPIIM 82

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
CHL00148      83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVL 121

-1

34367

COG4753

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Response regulator containing CheY-like receiver domain and AraC-type DNA-binding...

false

true

false

475

6e-13

67.65

25.05

1,1,2,119

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFI 81
COG4753        3 KVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFIIL 82

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 117928992  82 TSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVLA 120
COG4753       83 SGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121

-1

138540

PRK11361

acetoacetate metabolism regulatory protein AtoC; Provisional

false

true

false

457

7e-13

67.18

23.19

2,1,5,23,27,28,83

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGydhHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFI 81
PRK11361       6 RILIVDDEDNVRRMLSTAFALQG---FETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILM 82

                         90       100
                 ....*....|....*....|....*....
gi 117928992  82 TSEASPAMREQALAAGALFLIAKPFTPEE 110
PRK11361      83 TAYAEVETAVEALRCGAFDYVIKPFDLDE 111

-1

33243

COG3437

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Response regulator containing a CheY-like receiver domain and an HD-GYP domain [...

false

true

false

360

4e-12

64.93

30.83

3,0,14,26,29,40,42,71,85,40

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRR---AGWTTP 77
COG3437       15 LTVLLVDDEPDNLEALRQLLRMIGYR---VIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAmspSTRRIP 91

                         90       100       110
                 ....*....|....*....|....*....|....
gi 117928992  78 FGFITSEASPAMREQALAAGALFLIAKPFTPEEF 111
COG3437       92 VILLTAYADSEDRQRALEAGADDYLSKPISPKEL 125

-1

104359

PRK10161

transcriptional regulator PhoB; Provisional

false

true

false

229

7e-12

63.97

51.09

3,1,3,26,30,29,45,75,76,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDHhdiVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWT--TPFG 79
PRK10161       4 RILVVEDEAPIREMVCFVLEQNGFQP---VEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTrdIPVV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  80 FITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK10161      81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120

-1

137310

PRK09468

ompR

osmolarity response regulator; Provisional

false

true

false

239

8e-12

63.86

48.12

2,1,6,25,29,31,90

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFI 81
PRK09468       7 KILVVDDDMRLRALLERYLTEQGFQ---VRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIML 83

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 117928992  82 TSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK09468      84 TAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVL 121

-1

138091

PRK10693

response regulator of RpoS; Provisional

false

true

false

337

1e-11

63.18

30.56

3,1,8,13,20,21,8,28,32,79

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRiiermlVLAGYDHH---DIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPF 78
PRK10693       9 QILIVEDEPVFRS------LLDSWFSSlgaTTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPV 82

                         90       100
                 ....*....|....*....|....*....
gi 117928992  79 GFITSEASPAMREQALAAGALFLIAKPFT 107
PRK10693      83 LVISATENMADIAKALRLGVEDVLLKPVK 111

-1

134369

PRK00742

chemotaxis-specific methylesterase; Provisional

false

true

false

345

2e-11

62.88

31.01

6,0,2,24,25,26,46,74,72,3,77,80,7,84,88,6,92,94,15

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGyDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRagwTTP--- 77
PRK00742       3 IRVLVVDDSAFMRRLLSEILNSDP-DIEVVGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMA---LRPtpv 78

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117928992  78 --FGFITSE-ASPAMReqALAAGALFLIAKPFT 107
PRK00742      79 vmVSSLTERgAEITLE--ALELGAVDFVPKPFL 109

-1

34203

COG4565

CitB

Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Response regulator of citrate/malate metabolism [Transcription / Signal transduction...

false

true

false

224

3e-11

61.77

51.34

3,0,0,20,20,21,5,27,26,89

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERML-VLAGYdhHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFG 79
COG4565        1 INVLIIEDDPMVAEIHRRYVkQIPGF--SVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 117928992  80 FITSEASPAMREQALAAGALFLIAKPFTPEEFHAALD 116
COG4565       79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALT 115

-1

137612

PRK09959

hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

false

true

false

1197

5e-11

61.28

8.69

2,0,958,26,29,984,78

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992    1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK09959      959 LSILIADDHPTNRLLLKRQLNLLGYD---VDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWG 1035

                          90       100
                  ....*....|....*....|....*..
gi 117928992   81 ITSEASPAMREQALAAGALFLIAKPFT 107
PRK09959     1036 LTANAQANEREKGLNCGMNLCLFKPLT 1062

-1

32383

COG2201

CheB

Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]

Chemotaxis response regulator containing a CheY-like receiver domain and a...

false

true

false

350

6e-11

61.07

30.29

4,0,1,24,25,25,47,73,72,10,83,84,23

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGyDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAgWTTPFGF 80
COG2201        2 IRVLVVDDSALMRKVISDILNSDP-DIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRL-RPLPVIM 79

                         90       100
                 ....*....|....*....|....*...
gi 117928992  81 ITS--EASPAMREQALAAGALFLIAKPF 106
COG2201       80 VSSltEEGAEATLEALELGAVDFIAKPS 107

-1

139064

PRK12555

chemotaxis-specific methylesterase; Provisional

false

true

false

340

1e-10

59.63

30.88

4,0,1,24,25,25,48,74,73,9,83,84,22

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGyDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGwTTPFGF 80
PRK12555       2 MNVGIVDDSALAREALRRIIARRP-DHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRR-PCPVLI 79

                         90       100
                 ....*....|....*....|....*..
gi 117928992  81 ITS--EASPAMREQALAAGALFLIAKP 105
PRK12555      80 VSSltEAGASITYEALGAGALDAVDKP 106

-1

137869

PRK10403

transcriptional regulator NarP; Provisional

false

true

false

215

1e-09

56.79

52.56

3,1,7,21,22,29,5,29,34,86

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVL-AGYDHhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK10403       8 QVLIVDDHPLMRRGVRQLLELdPGFEV--VAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIII 85

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAAL 115
PRK10403      86 LTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAI 120

-1

138058

PRK10651

transcriptional regulator NarL; Provisional

false

true

false

216

3e-09

55.45

52.31

3,1,7,22,25,29,6,31,36,84

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAgyDHHDIV-HAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK10651       8 TILLIDDHPMLRTGVKQLISMA--PDITVVgEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVV 85

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAAL 115
PRK10651      86 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKAL 120

-1

138212

PRK10841

hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional

false

true

false

947

3e-09

55.43

10.98

2,0,824,26,29,850,78

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK10841     825 MMILVVDDHPINRRLLADQLGSLGYQ---CKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIG 901

                         90       100
                 ....*....|....*....|....*..
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFT 107
PRK10841     902 VTANALAEEKQRCLEAGMDSCLSKPVT 928

-1

138104

PRK10710

DNA-binding transcriptional regulator BaeR; Provisional

false

true

false

240

4e-09

55.13

47.50

3,1,11,40,44,51,29,74,80,45

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEATRlmaEQPPDLILCDWNMPGTNGLEFLTAIRRAGwTTPFGFI 81
PRK10710      12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVR---QTPPDLILLDLMLPGTDGLTLCREIRRFS-DIPIVMV 87

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 117928992  82 TSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK10710      88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTIL 125

-1

138195

PRK10816

DNA-binding transcriptional regulator PhoP; Provisional

false

true

false

223

4e-09

54.83

52.02

2,0,0,24,27,24,92

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGydhHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK10816       1 MRVLVVEDNALLRHHLKVQLQDAG---HQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILV 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK10816      78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALM 116

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

1e-08

53.38

22.54

4,1,3,19,21,22,4,27,26,49,76,77,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLvLAGYdhHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTT--PFG 79
PRK09581       4 RILVVDDIPANVKLLEAKL-LAEY--YTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAhiPVV 80

                         90       100
                 ....*....|....*....|....*.
gi 117928992  80 FITSEASPAMREQALAAGALFLIAKP 105
PRK09581      81 MVTALDDPSDRVRGLEAGADDFLTKP 106

-1

130877

TIGR01818

ntrC

nitrogen regulation protein NR(I)

false

true

false

463

2e-08

52.82

22.68

2,2,0,24,29,24,81

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFIT 82
TIGR01818      1 VWVVDDDRSIRWVLEKALSRAGYE---VRTFGNAASVLRALARGQPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMT 77

                         90       100
                 ....*....|....*....|....*...
gi 117928992  83 SEASPAMREQALAAGALFLIAKPFTPEE 110
TIGR01818     78 AHSDLDTAVAAYQRGAFEYLPKPFDLDE 105

-1

138282

PRK10923

glnG

nitrogen regulation protein NR(I); Provisional

false

true

false

469

2e-08

52.62

22.39

2,2,5,37,42,42,68

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEAtrlMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFIT 82
PRK10923       6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEA---LASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMT 82

                         90       100
                 ....*....|....*....|....*...
gi 117928992  83 SEASPAMREQALAAGALFLIAKPFTPEE 110
PRK10923      83 AHSDLDAAVSAYQQGAFDYLPKPFDIDE 110

-1

34204

COG4566

TtrR

Response regulator [Signal transduction mechanisms]

false

true

false

202

2e-08

52.17

56.93

3,2,6,40,44,46,8,53,54,67

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEATRLmaEQPPDLILcDWNMPGTNGLEFLTAIRRAGWTTPFGFIT 82
COG4566        7 VHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLL-DVRMPGMSGLELQDRLAERGIRLPVIFLT 83

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 117928992  83 SEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVLA 120
COG4566       84 GHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121

-1

33502

COG3707

AmiR

Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Response regulator with putative antiterminator output domain [Signal transduction...

false

true

false

194

3e-08

51.79

58.25

3,0,5,26,28,31,43,72,74,44

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRaGWTTPFGF 80
COG3707        6 LRVLVADDEALTRMDIREGLLEAGYQ--RVGEAADGLEAVEVCERLQPDVVILDIEMPRRDIIEALLLASE-NVARPIVA 82

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALD 116
COG3707       83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118

-1

138305

PRK10955

DNA-binding transcriptional regulator CpxR; Provisional

false

true

false

232

7e-08

50.60

48.71

4,1,2,25,29,27,14,44,41,28,73,69,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMaEQPPDLILCDWNMPGTNGLEFLTAIRRAgWTTPFGFI 81
PRK10955       3 KILLVDDDRELTSLLKELLEMEGFN---VIVAHDGEQALDLL-DDSIDLLLLDVMMPKKNGIDTLKALRQT-HQTPVIML 77

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 117928992  82 TSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK10955      78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAIL 115

-1

137244

PRK09390

fixJ

response regulator FixJ; Provisional

false

true

false

202

9e-08

50.41

55.94

2,4,7,35,42,42,78

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   5 VVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEAtrlMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFITSE 84
PRK09390       8 VVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDA---LPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVMTGH 84

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 117928992  85 ASPAMREQALAAGALFLIAKPFTPEEFHAALDPVLA 120
PRK09390      85 GDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALA 120

-1

138051

PRK10643

DNA-binding transcriptional regulator BasR; Provisional

false

true

false

222

1e-07

50.09

49.55

2,0,0,26,29,26,84

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK10643       1 MKILIVEDDTLLLQGLILAAQTEGYA---CDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLI 77

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHA 113
PRK10643      78 LTARDTLEDRIAGLDVGADDYLVKPFALEELHA 110

-1

130454

TIGR01387

cztR_silR_copR

heavy metal response regulator

false

true

false

218

1e-07

50.18

49.54

2,2,0,24,29,24,84

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFIT 82
TIGR01387      1 ILVVEDEQKTAEYLQQGLSESGYV---VDAASNGRDGLHLALKDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLT 77

                         90       100       110
                 ....*....|....*....|....*....|.
gi 117928992  83 SEASPAMREQALAAGALFLIAKPFTPEEFHA 113
TIGR01387     78 ARDSVADKVKGLDLGADDYLVKPFSFSELLA 108

-1

33090

COG3279

LytT

Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]

Response regulator of the LytR/AlgR family [Transcription / Signal transduction...

false

true

false

244

6e-07

47.66

45.90

4,0,1,20,21,21,61,82,84,11,97,95,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLvLAGYDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
COG3279        2 LKVLIVDDEPLAREELRRIL-NEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVF 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 117928992  81 IT--SEASPAMREQAlaagALFLIAKPFTPEEFHAAL 115
COG3279       81 VTahDEYAVAAFEVE----ALDYLLKPISEERLAKTL 113

-1

137892

PRK10430

DNA-binding transcriptional activator DcuR; Provisional

false

true

false

239

1e-06

47.05

48.54

3,0,1,9,10,10,11,21,23,94

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSrAMRRIIERMLV--LAGYDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPF 78
PRK10430       2 INVLIVDDD-AMVAELNRRYVaqIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 117928992  79 GFITSEASPAMREQALAAGALFLIAKPFTPEEFHAAL 115
PRK10430      81 IVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEAL 117

-1

137850

PRK10365

transcriptional regulatory protein ZraR; Provisional

false

true

false

441

2e-06

46.17

26.53

2,0,5,41,44,46,76

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEATRlmaEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK10365       6 IDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVR---EQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLI 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVLA 120
PRK10365      83 MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALA 122

-1

132001

TIGR02956

TMAO_torS

TMAO reductase sytem sensor TorS

false

true

false

968

2e-06

45.92

12.29

4,1,703,23,27,726,44,71,771,20,91,793,29

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGydhHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRR-AGWTTPFGF 80
TIGR02956    704 RVLLVEDNEVNQMVAQGFLTRLG---HKVTLAESGQSALECFHQHAFDLALLDINLPDGDGVTLLQQLRAiYGAKNEVKF 780

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 117928992  81 ITSEASPAMRE--QALAAGALFLIAKPFTPEEFHAALDPVLA 120
TIGR02956    781 IAFSAHVFNEDvaQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822

-1

34205

COG4567

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [..

false

true

false

182

3e-06

45.73

60.44

2,2,11,24,29,35,86

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFIT 82
COG4567       12 LLLVDDDTPFLRTLARAMERRGFA---VVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117928992  83 SEASPAMREQALAAGALFLIAKPFTPEEFHAAL 115
COG4567       89 GYASIATAVEAVKLGACDYLAKPADADDILAAL 121

-1

138611

PRK11517

transcriptional regulatory protein YedW; Provisional

false

true

false

223

3e-06

45.31

48.88

3,0,0,26,29,26,44,74,70,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGwTTPFGF 80
PRK11517       1 MKILLIEDNQRTQEWVTQGLSEAGYV---IDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAK-QTPVIC 76

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHA 113
PRK11517      77 LTARDSVDDRVRGLDSGANDYLVKPFSFSELLA 109

-1

139916

PRK13856

two-component response regulator VirG; Provisional

false

true

false

241

3e-06

45.19

44.81

4,2,3,24,29,27,44,74,71,11,85,83,28

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGwTTPFGFIT 82
PRK13856       4 VLVIDDDVAMRHLIVEYLTIHAFK---VTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATKS-DVPIIIIS 79

                         90       100       110
                 ....*....|....*....|....*....|..
gi 117928992  83 SEA-SPAMREQALAAGALFLIAKPFTPEEFHA 113
PRK13856      80 GDRlEEADKVVALELGATDFIAKPFGTREFLA 111

-1

138454

PRK11173

two-component response regulator; Provisional

false

true

false

237

1e-05

43.51

43.88

3,2,5,24,29,29,34,64,63,46

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLeFLTAIRRAGWTTPFGFIT 82
PRK11173       6 ILIVEDELVTRNTLKSIFEAEGYD---VFEATDGAEMHQILSENDINLVIMDINLPGKNGL-LLARELREQANVALMFLT 81

                         90       100
                 ....*....|....*....|....*...
gi 117928992  83 SEASPAMREQALAAGALFLIAKPFTPEE 110
PRK11173      82 GRDNEVDKILGLEIGADDYITKPFNPRE 109

-1

131922

TIGR02875

spore_0_A

sporulation transcription factor Spo0A

false

true

false

262

3e-05

42.09

43.51

4,0,2,20,22,22,12,34,35,47,81,84,32

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLvlAGYDHHDIVHAA-DAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFG 79
TIGR02875      3 IRIVIADDNKEFCNLLKEYL--AAQPDMEVVGVAhNGVDALELIKEQQPDVVVLDIIMPHLDGIGVLEKLNEIELSARPR 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 117928992  80 FI--TSEASPAMREQALAAGALFLIAKPFTPEEFHA 113
TIGR02875     81 VImlSAFGQEKITQRAVALGADYYVLKPFDLEILAA 116

-1

137546

PRK09836

DNA-binding transcriptional activator CusR; Provisional

false

true

false

226

3e-05

42.31

51.33

2,0,0,26,29,26,90

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK09836       1 MKLLIVEDEKKTGEYLTKGLTEAGFV---VDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILL 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK09836      78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLL 116

-1

137960

PRK10529

DNA-binding transcriptional activator KdpE; Provisional

false

true

false

225

3e-05

42.14

48.44

5,2,3,24,30,27,14,44,42,27,73,69,3,76,73,39

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIERMLVLAGYDhhdiVHAADAVEATRLMA-EQPPDLILCDWNMPGTNGLEFLTAIRRagWTT-PFGF 80
PRK10529       4 VLIVEDEQAIRRFLRTALEGDGMR----VFEAETLQRGLLEAaTRKPDLIILDLGLPDGDGIEFIRDLRQ--WSAiPVIV 77

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAAL 115
PRK10529      78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARL 112

-1

138391

PRK11083

DNA-binding response regulator CreB; Provisional

false

true

false

229

3e-05

41.90

48.03

2,0,3,41,44,44,69

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEATRlmaEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK11083       4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLR---QQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIF 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHA 113
PRK11083      81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAA 113

-1

137846

PRK10360

DNA-binding transcriptional activator UhpA; Provisional

false

true

false

196

4e-05

41.93

59.18

3,0,1,24,25,25,51,79,76,41

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGyDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTpfgF 80
PRK10360       2 ITVALIDDHLIVRSGFAQLLGLEP-DLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATI---M 77

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVLA 120
PRK10360      78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117

-1

137827

PRK10336

DNA-binding transcriptional regulator QseB; Provisional

false

true

false

219

6e-05

41.08

52.97

2,0,0,26,29,26,90

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGF 80
PRK10336       1 MRILLIEDDMLIGDGIKTGLSKMGFS---VDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLI 77

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 117928992  81 ITSEASPAMREQALAAGALFLIAKPFTPEEFHAALDPVL 119
PRK10336      78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALM 116

-1

137598

PRK09935

transcriptional regulator FimZ; Provisional

false

true

false

210

1e-04

39.88

48.10

2,2,5,15,18,20,86

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDSRAMRRIIErMLVLAGYDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRRAGWTTPFGFIT 82
PRK09935       6 VIIMDEHPIVRMSIE-VLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKVLFLS 84

                         90       100
                 ....*....|....*....|..
gi 117928992  83 SEASPAMREQALAAGALFLIAK 104
PRK09935      85 SKSECFYAGRAIRAGANGFVSK 106

-1

138153

PRK10766

DNA-binding transcriptional regulator TorR; Provisional

false

true

false

224

2e-04

39.64

29.46

2,1,3,25,29,28,41

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 117928992   2 RILVVDDSRAMRRIIERMLVLAGYDhhdIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIR 70
PRK10766       4 HILVVEDEPVTRARLQGYFEQEGYR---VSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELR 69

-1

138717

PRK11697

putative two-component response-regulatory protein YehT; Provisional

false

true

false

239

2e-04

39.09

27.20

3,0,1,14,16,15,15,31,31,35

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 117928992   1 MRILVVDDSRAMRRiiERMLVLAGYDHHDIV-HAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFL 66
PRK11697       2 IKVLIVDDEPLARE--ELRELLQEEGDIEIVgECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELV 66

-1

138409

PRK11107

hybrid sensory histidine kinase BarA; Provisional

false

true

false

920

5e-04

37.95

11.30

4,0,668,20,24,688,11,35,700,36,71,738,34

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSRAMRRIIERMLvlagYDHHDIVHAAD-AVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIRR--AGWTTP 77
PRK11107     669 LTVMAVDDNPANLKLIGALL----EEQVEHVVLCDsGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQlpHNQNTP 744

                         90       100
                 ....*....|....*....|....*...
gi 117928992  78 FGFITSEASPAMREQALAAGALFLIAKP 105
PRK11107     745 IIAVTAHAMAGERERLLGAGMDDYLAKP 772

-1

137400

PRK09581

pleD

response regulator PleD; Reviewed

false

true

false

457

7e-04

37.59

14.22

4,1,156,7,8,165,5,15,170,6,25,176,45

                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 117928992   2 RILVVDD--SRAMRriIERMLVlagyDHHDIVHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEFLTAIR 70
PRK09581     157 RILLVDDdvSQAER--IANILK----EEFRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLR 221

-1

137611

PRK09958

DNA-binding transcriptional activator EvgA; Provisional

false

true

false

204

7e-04

37.18

55.88

5,0,0,10,10,14,7,17,23,9,28,32,13,47,45,69

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   1 MRILVVDDSR----AMRRIIE--RMLVLAGYDhhDIVHAADAVEATRlmaeqpPDLILCDWNMPGTNGLEFLTAIRRAGW 74
PRK09958       1 MNAIIIDDHPlaiaAIRNLLIknDIEILAELT--EGGSAVQRVETLK------PDIVIIDVDIPGVNGIQVLETLRKRQY 72

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 117928992  75 TTPFGFITSEASPAMREQALAAGALFLIAKPFTPEEFHAALD 116
PRK09958      73 SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIE 114

-1

137324

PRK09483

response regulator; Provisional

false

true

false

216

0.001

36.62

54.17

8,2,3,7,9,13,2,11,16,6,17,24,7,31,31,33,67,64,14,81,84,18,102,102,18

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 117928992   3 ILVVDDS---RA-MRRIIE--RMLVLAGydhhdivHAADAVEATRLMAEQPPDLILCDWNMPGTNGLEfltAIRRAGWTT 76
PRK09483       4 VLLVDDHelvRAgIRRILEdiKGIKVVG-------EASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLE---ATRKILRST 73

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 117928992  77 PFGFI------TSEASPAMREQALAAGALfliAKPFTPEEFHAALDPVLA 120
PRK09483      74 PDVKIimltvhTENPLPAKVMQAGAAGYL---SKGAAPQEVVSAIRSVHS 120

-1

138589

PRK11466

hybrid sensory histidine kinase TorS; Provisional

false

true

false

912

0.008

33.84

6.69

2,0,681,39,41,720,22

                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 117928992   1 MRILVVDDSRAMRRIIERMLVLAGYDHHDIVHAADAVEAtrLMAEQPPDLILCDWNMPGTNGL 63
PRK11466     682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALET--LQNSEPFAAALVDFDLPDYDGI 742

-1

active site	0	8	8	true	29071	cd00156	REC
phosphorylation site	1	1	1	true	29071	cd00156	REC
intermolecular recognition site	2	5	5	true	29071	cd00156	REC
dimerization interface	3	3	3	true	29071	cd00156	REC